Cmc04g0097441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0097441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 12588335 .. 12589186 (+)
RNA-Seq Expression	Cmc04g0097441
Synteny	Cmc04g0097441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGGGACTATCCGGATTTCTTTCTTGAAGAACTTCCAAGGTTACTTCCTCACAGAGAGATTGAGTTTGCCATAGAGTTGGAGCCGAGCACGGTTTCTATATCCAGAGCCCCGTACAGAATGGCCCCAGCAGAGTTGGAAGAACTGAAAGTGCAGTTACAGGAATTGCTTGATAAGGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTCAAGAAGAAGGATGGACCGATGCGCCTATGCATTGACTATAGAGAGTTGAACAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTTTAAGATTGATCTTCGATCGGGATATCATCAGCTAAGGATTAAGGATGGTGATGTACCGAAGACAACCTTTCGCTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTTTGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACGGAGGTCGAGCATGAGGAACATTTACGCATGGTTCTGCAAACCCTTTGGGATAATAAATTGTATGCAAAGTTCTCGAAATTTGAGTTTTGGCTGAAGCAGGTGACCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGTTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGGCGGTTTGTGGAGAACTTTCCCGTATAG

mRNA sequence

ATGGTAAGGGACTATCCGGATTTCTTTCTTGAAGAACTTCCAAGGTTACTTCCTCACAGAGAGATTGAGTTTGCCATAGAGTTGGAGCCGAGCACGGTTTCTATATCCAGAGCCCCGTACAGAATGGCCCCAGCAGAGTTGGAAGAACTGAAAGTGCAGTTACAGGAATTGCTTGATAAGGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTCAAGAAGAAGGATGGACCGATGCGCCTATGCATTGACTATAGAGAGTTGAACAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTTTAAGATTGATCTTCGATCGGGATATCATCAGCTAAGGATTAAGGATGGTGATGTACCGAAGACAACCTTTCGCTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTTTGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACGGAGGTCGAGCATGAGGAACATTTACGCATGGTTCTGCAAACCCTTTGGGATAATAAATTGTATGCAAAGTTCTCGAAATTTGAGTTTTGGCTGAAGCAGGTGACCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGTTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGGCGGTTTGTGGAGAACTTTCCCGTATAG

Coding sequence (CDS)

ATGGTAAGGGACTATCCGGATTTCTTTCTTGAAGAACTTCCAAGGTTACTTCCTCACAGAGAGATTGAGTTTGCCATAGAGTTGGAGCCGAGCACGGTTTCTATATCCAGAGCCCCGTACAGAATGGCCCCAGCAGAGTTGGAAGAACTGAAAGTGCAGTTACAGGAATTGCTTGATAAGGGCTTCATTCGACCGAGTGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTCAAGAAGAAGGATGGACCGATGCGCCTATGCATTGACTATAGAGAGTTGAACAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGACCTGTTTGACCAGTTACAGGGAGCTACAGTGTTCTTTAAGATTGATCTTCGATCGGGATATCATCAGCTAAGGATTAAGGATGGTGATGTACCGAAGACAACCTTTCGCTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGACAGTGTTTTTGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACGGAGGTCGAGCATGAGGAACATTTACGCATGGTTCTGCAAACCCTTTGGGATAATAAATTGTATGCAAAGTTCTCGAAATTTGAGTTTTGGCTGAAGCAGGTGACCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGTTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGGCGGTTTGTGGAGAACTTTCCCGTATAG

Protein sequence

MVRDYPDFFLEELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFFKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKAGVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENFPV

Homology

[Close]

BLAST of Cmc04g0097441 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 523.9 bits (1348), Expect = 8.8e-145
Identity = 259/281 (92.17%), Postives = 265/281 (94.31%), Query Frame = 0


Query: 1    MVRDYPDFFLEELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDK 60
            +VRDYPD F EELP L PHRE+EFAIELEP TV ISRAPYRMAPAEL+ELKVQLQELLDK
Sbjct: 1022 VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 1081

Query: 61   GFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 120
            GFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF
Sbjct: 1082 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 1141

Query: 121  FKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLD 180
             KIDLRSGYHQLRIKDGDVPKT FRSRYGHYEFIVMSFGLTNAP VF+DLMNRVFREFLD
Sbjct: 1142 SKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 1201

Query: 181  TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKA 240
            TFVIVFIDDILIYSKTE EHEEHLR+VLQTL DNKLYAKFSK EFWLKQV+FLGHVVSKA
Sbjct: 1202 TFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKA 1261

Query: 241  GVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 282
            GVSVDP KIEAVT W RPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1262 GVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1302

[Close]

BLAST of Cmc04g0097441 vs. NCBI nr
Match: KAA0040695.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 523.5 bits (1347), Expect = 1.2e-144
Identity = 257/281 (91.46%), Postives = 265/281 (94.31%), Query Frame = 0


Query: 1   MVRDYPDFFLEELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDK 60
           +VRDYPD F +ELP L PHRE+EFAIELEP TV ISRAPYRMAPAEL+ELKVQLQELLDK
Sbjct: 626 VVRDYPDVFPDELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 685

Query: 61  GFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 120
           GFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF
Sbjct: 686 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 745

Query: 121 FKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLD 180
            +IDLRSGYHQLRIKD DVPKT FRSRYGHYEFIVMSFGLTNAP VF+DLMNRVFREFLD
Sbjct: 746 SEIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 805

Query: 181 TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKA 240
           TFVIVFIDDILIYSKTE EHEEHLRMVLQTLWDNKLYAKFSK EFWLKQV+FLGHVVSKA
Sbjct: 806 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKA 865

Query: 241 GVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 282
           GVSVDP KIEAVT W RPSTVSEVRSFLGLAGYYR+FVENF
Sbjct: 866 GVSVDPAKIEAVTGWARPSTVSEVRSFLGLAGYYRQFVENF 906

[Close]

BLAST of Cmc04g0097441 vs. NCBI nr
Match: KAA0060256.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 522.7 bits (1345), Expect = 2.0e-144
Identity = 259/281 (92.17%), Postives = 264/281 (93.95%), Query Frame = 0


Query: 1   MVRDYPDFFLEELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDK 60
           +VRDYPD FLEELP L PHRE+EFAIELEP TV ISRAPYRMAPAEL+ELKVQLQELLDK
Sbjct: 516 VVRDYPDVFLEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 575

Query: 61  GFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 120
           GFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLP IDDLFDQLQGATVF
Sbjct: 576 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPMIDDLFDQLQGATVF 635

Query: 121 FKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLD 180
            KIDLRSGYHQLRIKD DVPKT FRSRYGHYEFIVMSFGLTNAP VF+DLMNRVFREFLD
Sbjct: 636 SKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 695

Query: 181 TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKA 240
           TFVIVFIDDILIYSKTE EHEEHLRMVLQTL DNKLYAKFSK EFWLKQV+FLGHVVSKA
Sbjct: 696 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKA 755

Query: 241 GVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 282
           GVSVDP KIEAVT W RPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 756 GVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 796

[Close]

BLAST of Cmc04g0097441 vs. NCBI nr
Match: KAA0031931.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 522.7 bits (1345), Expect = 2.0e-144
Identity = 258/281 (91.81%), Postives = 265/281 (94.31%), Query Frame = 0


Query: 1    MVRDYPDFFLEELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDK 60
            +VRDYPD F EELP L PHRE+EFAIELEP TV ISRAPYRMAPAEL+ELKVQLQELLDK
Sbjct: 911  VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 970

Query: 61   GFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 120
            GFIRPS+SPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF
Sbjct: 971  GFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 1030

Query: 121  FKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLD 180
             KIDLRSGYHQLRIKDGDVPKT FRSRYGHYEFIVMSFGLTNAP VF+DLMNRVFREFLD
Sbjct: 1031 SKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 1090

Query: 181  TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKA 240
            TFVIVFIDDILIYSKTE EHEEHLR+VLQTL DNKLYAKFSK EFWLKQV+FLGHVVSKA
Sbjct: 1091 TFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKA 1150

Query: 241  GVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 282
            GVSVDP KIEAVT W RPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1151 GVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1191

[Close]

BLAST of Cmc04g0097441 vs. NCBI nr
Match: KAA0040689.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 522.7 bits (1345), Expect = 2.0e-144
Identity = 259/281 (92.17%), Postives = 265/281 (94.31%), Query Frame = 0


Query: 1   MVRDYPDFFLEELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDK 60
           +VRDYPD F EELP L PHRE+EFAIELEP TV ISRAPYRMAPAEL+ELKVQLQELLDK
Sbjct: 697 VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 756

Query: 61  GFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 120
           GFIRPS+SPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF
Sbjct: 757 GFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 816

Query: 121 FKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLD 180
            KIDLRSGYHQLRIKD DVPKT FRSRYGHYEFIVMSFGLTNAP VF+DLMNRVFREFLD
Sbjct: 817 SKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 876

Query: 181 TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKA 240
           TFVIVFIDDILIYSKTE EHEEHLRMVLQTL DNKLYAKFSK EFWLKQV+FLGHVVSKA
Sbjct: 877 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKA 936

Query: 241 GVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 282
           GVSVDPVKIEAVT W RPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 937 GVSVDPVKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 977

[Close]

BLAST of Cmc04g0097441 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.4e-52
Identity = 97/247 (39.27%), Postives = 154/247 (62.35%), Query Frame = 0


Query: 40  YRMAPAELEELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GPMRLCIDYRELN 99
           Y +A     E++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN
Sbjct: 212 YPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLN 271

Query: 100 KVTVKNRYPLPRIDDLFDQLQGATVFFKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFI 159
           ++T+ +RYP+P +D++  +L     F  IDL  G+HQ+ + +  + KT F ++ GHYE++
Sbjct: 272 EITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYL 331

Query: 160 VMSFGLTNAPTVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDN 219
            M FGL NAP  F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D 
Sbjct: 332 RMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADA 391

Query: 220 KLYAKFSKFEFWLKQVTFLGHVVSKAGVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYY 279
            L  +  K EF  K+  FLGH+V+  G+  +P+K++A+ S+P P+   E+R+FLGL GYY
Sbjct: 392 NLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYY 451

Query: 280 RRFVENF 282
           R+F+ N+
Sbjct: 452 RKFIPNY 458

[Close]

BLAST of Cmc04g0097441 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 205.3 bits (521), Expect = 9.1e-52
Identity = 106/259 (40.93%), Postives = 154/259 (59.46%), Query Frame = 0


Query: 22  IEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 81
           ++  IE++P        PY +     +E+   +Q+LLD  FI PS SP  +PV+ V KKD
Sbjct: 584 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 643

Query: 82  GPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFFKIDLRSGYHQLRIKDGDVPK 141
           G  RLC+DYR LNK T+ + +PLPRID+L  ++  A +F  +DL SGYHQ+ ++  D  K
Sbjct: 644 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYK 703

Query: 142 TTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHE 201
           T F +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH 
Sbjct: 704 TAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHW 763

Query: 202 EHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKAGVSVDPVKIEAVTSWPRPSTV 261
           +HL  VL+ L +  L  K  K +F  ++  FLG+ +    ++    K  A+  +P P TV
Sbjct: 764 KHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTV 823

Query: 262 SEVRSFLGLAGYYRRFVEN 281
            + + FLG+  YYRRF+ N
Sbjct: 824 KQAQRFLGMINYYRRFIPN 840

[Close]

BLAST of Cmc04g0097441 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 205.3 bits (521), Expect = 9.1e-52
Identity = 106/259 (40.93%), Postives = 154/259 (59.46%), Query Frame = 0


Query: 22  IEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD 81
           ++  IE++P        PY +     +E+   +Q+LLD  FI PS SP  +PV+ V KKD
Sbjct: 610 VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKD 669

Query: 82  GPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFFKIDLRSGYHQLRIKDGDVPK 141
           G  RLC+DYR LNK T+ + +PLPRID+L  ++  A +F  +DL SGYHQ+ ++  D  K
Sbjct: 670 GTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYK 729

Query: 142 TTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHE 201
           T F +  G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH 
Sbjct: 730 TAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHW 789

Query: 202 EHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKAGVSVDPVKIEAVTSWPRPSTV 261
           +HL  VL+ L +  L  K  K +F  ++  FLG+ +    ++    K  A+  +P P TV
Sbjct: 790 KHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTV 849

Query: 262 SEVRSFLGLAGYYRRFVEN 281
            + + FLG+  YYRRF+ N
Sbjct: 850 KQAQRFLGMINYYRRFIPN 866

[Close]

BLAST of Cmc04g0097441 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.5e-51
Identity = 97/247 (39.27%), Postives = 154/247 (62.35%), Query Frame = 0


Query: 40  YRMAPAELEELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG-----PMRLCIDYRELN 99
           Y    A  +E++ Q+Q++L++G IR S SP+ +P+  V KK         R+ IDYR+LN
Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272

Query: 100 KVTVKNRYPLPRIDDLFDQLQGATVFFKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFI 159
           ++TV +R+P+P +D++  +L     F  IDL  G+HQ+ +    V KT F +++GHYE++
Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332

Query: 160 VMSFGLTNAPTVFLDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDN 219
            M FGL NAP  F   MN + R  L+   +V++DDI+++S +  EH + L +V + L   
Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKA 392

Query: 220 KLYAKFSKFEFWLKQVTFLGHVVSKAGVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYY 279
            L  +  K EF  ++ TFLGHV++  G+  +P KIEA+  +P P+   E+++FLGL GYY
Sbjct: 393 NLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYY 452

Query: 280 RRFVENF 282
           R+F+ NF
Sbjct: 453 RKFIPNF 459

[Close]

BLAST of Cmc04g0097441 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 6.5e-50
Identity = 99/268 (36.94%), Postives = 160/268 (59.70%), Query Frame = 0


Query: 11  EELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDKGFIRPSVSPW 70
           E+LP+  P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +  
Sbjct: 391 EKLPK--PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAIN 450

Query: 71  GAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFFKIDLRSGYH 130
             PV+FV KK+G +R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F K+DL+S YH
Sbjct: 451 ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYH 510

Query: 131 QLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLDTFVIVFIDDI 190
            +R++ GD  K  FR   G +E++VM +G++ AP  F   +N +  E  ++ V+ ++DDI
Sbjct: 511 LIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDI 570

Query: 191 LIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKAGVSVDPVKIE 250
           LI+SK+E EH +H++ VLQ L +  L    +K EF   QV F+G+ +S+ G +     I+
Sbjct: 571 LIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENID 630

Query: 251 AVTSWPRPSTVSEVRSFLGLAGYYRRFV 279
            V  W +P    E+R FLG   Y R+F+
Sbjct: 631 KVLQWKQPKNRKELRQFLGSVNYLRKFI 656

[Close]

BLAST of Cmc04g0097441 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 4.3e-145
Identity = 259/281 (92.17%), Postives = 265/281 (94.31%), Query Frame = 0


Query: 1    MVRDYPDFFLEELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDK 60
            +VRDYPD F EELP L PHRE+EFAIELEP TV ISRAPYRMAPAEL+ELKVQLQELLDK
Sbjct: 1022 VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 1081

Query: 61   GFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 120
            GFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF
Sbjct: 1082 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 1141

Query: 121  FKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLD 180
             KIDLRSGYHQLRIKDGDVPKT FRSRYGHYEFIVMSFGLTNAP VF+DLMNRVFREFLD
Sbjct: 1142 SKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 1201

Query: 181  TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKA 240
            TFVIVFIDDILIYSKTE EHEEHLR+VLQTL DNKLYAKFSK EFWLKQV+FLGHVVSKA
Sbjct: 1202 TFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKA 1261

Query: 241  GVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 282
            GVSVDP KIEAVT W RPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1262 GVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1302

[Close]

BLAST of Cmc04g0097441 vs. ExPASy TrEMBL
Match: A0A5A7TGX4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00100 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 5.6e-145
Identity = 257/281 (91.46%), Postives = 265/281 (94.31%), Query Frame = 0


Query: 1   MVRDYPDFFLEELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDK 60
           +VRDYPD F +ELP L PHRE+EFAIELEP TV ISRAPYRMAPAEL+ELKVQLQELLDK
Sbjct: 626 VVRDYPDVFPDELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 685

Query: 61  GFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 120
           GFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF
Sbjct: 686 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 745

Query: 121 FKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLD 180
            +IDLRSGYHQLRIKD DVPKT FRSRYGHYEFIVMSFGLTNAP VF+DLMNRVFREFLD
Sbjct: 746 SEIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 805

Query: 181 TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKA 240
           TFVIVFIDDILIYSKTE EHEEHLRMVLQTLWDNKLYAKFSK EFWLKQV+FLGHVVSKA
Sbjct: 806 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLWDNKLYAKFSKCEFWLKQVSFLGHVVSKA 865

Query: 241 GVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 282
           GVSVDP KIEAVT W RPSTVSEVRSFLGLAGYYR+FVENF
Sbjct: 866 GVSVDPAKIEAVTGWARPSTVSEVRSFLGLAGYYRQFVENF 906

[Close]

BLAST of Cmc04g0097441 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 9.5e-145
Identity = 258/281 (91.81%), Postives = 265/281 (94.31%), Query Frame = 0


Query: 1    MVRDYPDFFLEELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDK 60
            +VRDYPD F EELP L PHRE+EFAIELEP TV ISRAPYRMAPAEL+ELKVQLQELLDK
Sbjct: 911  VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 970

Query: 61   GFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 120
            GFIRPS+SPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF
Sbjct: 971  GFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 1030

Query: 121  FKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLD 180
             KIDLRSGYHQLRIKDGDVPKT FRSRYGHYEFIVMSFGLTNAP VF+DLMNRVFREFLD
Sbjct: 1031 SKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 1090

Query: 181  TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKA 240
            TFVIVFIDDILIYSKTE EHEEHLR+VLQTL DNKLYAKFSK EFWLKQV+FLGHVVSKA
Sbjct: 1091 TFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKA 1150

Query: 241  GVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 282
            GVSVDP KIEAVT W RPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1151 GVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1191

[Close]

BLAST of Cmc04g0097441 vs. ExPASy TrEMBL
Match: A0A5A7THE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00030 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 9.5e-145
Identity = 259/281 (92.17%), Postives = 265/281 (94.31%), Query Frame = 0


Query: 1   MVRDYPDFFLEELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDK 60
           +VRDYPD F EELP L PHRE+EFAIELEP TV ISRAPYRMAPAEL+ELKVQLQELLDK
Sbjct: 697 VVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 756

Query: 61  GFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 120
           GFIRPS+SPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF
Sbjct: 757 GFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 816

Query: 121 FKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLD 180
            KIDLRSGYHQLRIKD DVPKT FRSRYGHYEFIVMSFGLTNAP VF+DLMNRVFREFLD
Sbjct: 817 SKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 876

Query: 181 TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKA 240
           TFVIVFIDDILIYSKTE EHEEHLRMVLQTL DNKLYAKFSK EFWLKQV+FLGHVVSKA
Sbjct: 877 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKA 936

Query: 241 GVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 282
           GVSVDPVKIEAVT W RPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 937 GVSVDPVKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 977

[Close]

BLAST of Cmc04g0097441 vs. ExPASy TrEMBL
Match: A0A5A7V1A3 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00200 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 9.5e-145
Identity = 259/281 (92.17%), Postives = 264/281 (93.95%), Query Frame = 0


Query: 1   MVRDYPDFFLEELPRLLPHREIEFAIELEPSTVSISRAPYRMAPAELEELKVQLQELLDK 60
           +VRDYPD FLEELP L PHRE+EFAIELEP TV ISRAPYRMAPAEL+ELKVQLQELLDK
Sbjct: 516 VVRDYPDVFLEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDK 575

Query: 61  GFIRPSVSPWGAPVLFVKKKDGPMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVF 120
           GFIRPSVSPWGAPVLFVKKKDG MRLCIDYRELNKVTVKNRYPLP IDDLFDQLQGATVF
Sbjct: 576 GFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPMIDDLFDQLQGATVF 635

Query: 121 FKIDLRSGYHQLRIKDGDVPKTTFRSRYGHYEFIVMSFGLTNAPTVFLDLMNRVFREFLD 180
            KIDLRSGYHQLRIKD DVPKT FRSRYGHYEFIVMSFGLTNAP VF+DLMNRVFREFLD
Sbjct: 636 SKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLD 695

Query: 181 TFVIVFIDDILIYSKTEVEHEEHLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLGHVVSKA 240
           TFVIVFIDDILIYSKTE EHEEHLRMVLQTL DNKLYAKFSK EFWLKQV+FLGHVVSKA
Sbjct: 696 TFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKA 755

Query: 241 GVSVDPVKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVENF 282
           GVSVDP KIEAVT W RPSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 756 GVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 796

[Close]

BLAST of Cmc04g0097441 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 9.8e-17
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 203 HLRMVLQTLWDNKLYAKFSKFEFWLKQVTFLG--HVVSKAGVSVDPVKIEAVTSWPRPST 262
           HL MVLQ    ++ YA   K  F   Q+ +LG  H++S  GVS DP K+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 263 VSEVRSFLGLAGYYRRFVENF 282
            +E+R FLGL GYYRRFV+N+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNY 83

The following BLAST results are available for this feature:

BLAST of Cmc04g0097441 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047433.1	8.8e-145	92.17	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0040695.1	1.2e-144	91.46	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060256.1	2.0e-144	92.17	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0031931.1	2.0e-144	91.81	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040689.1	2.0e-144	92.17	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0097441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.4e-52	39.27	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q99315	9.1e-52	40.93	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	9.1e-52	40.93	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	3.5e-51	39.27	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P0CT41	6.5e-50	36.94	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc04g0097441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TV57	4.3e-145	92.17	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TGX4	5.6e-145	91.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]
A0A5A7SQU8	9.5e-145	91.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7THE6	9.5e-145	92.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]
A0A5A7V1A3	9.5e-145	92.17	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of Cmc04g0097441 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	9.8e-17	49.38	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 22..162 e-value: 1.0E-88 score: 298.2
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 37..280
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 37..280
None	No IPR available	CDD	cd01647	RT_LTR	coord: 61..237 e-value: 7.57017E-89 score: 260.22
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 247..283 e-value: 2.0E-12 score: 48.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 102..237 e-value: 1.0E-88 score: 298.2
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 77..236 e-value: 3.1E-25 score: 89.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 58..237 score: 10.331046
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..281

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0097441.1	Cmc04g0097441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding