Cmc04g0097251 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0097251
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 12216216 .. 12217399 (+)
RNA-Seq Expression	Cmc04g0097251
Synteny	Cmc04g0097251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCTAAATGGGACCCTATCTGAAGAAGTCTATATGAAACCACCTCCTGGCACTACTCCACCACCACAGAAAGTATGCCTCTTTCGCCGTGCTCTCTATGGTCTCAAACAAGCTCTTCGAGCTTGGTTTGCAACATTTAGTTCCACTATTACCCAACTTGGGTTCACCTCCAGTTCTCATGATTCCGCCTTATTTACTCTTCAGACATCTAATGGTATTGTTCTCTTTCTTTTATATGTTGACGACATGATCATTACAGGTGATGATCCTCAAGTCATATCTGATTTGCAATGTTATTTGGGTCAGCATTTTGAGATGAAAGACTTAAGAAATCTCAGCTATTTTCTTAGTCTTGAGATCTCATCATCACCCAGTGGTTACTATTTATCTCAAGCAAAATATGCTTCTGACCTCCTTAACCGATCTAGTATTACTGATTCTGCCACAATCTCAACGCCTCTGGATCCTAATGTGCACCTCACTCTTTTTGATGGTGTTCCTCTTGACGATCCCACTTTATATCGACAACTTGTTGGCAGTCTAATTTAATTAACTGTGACCCGTCCAGATATTGCATATGCAATTCACATTGTTAGTCAGTTCATGACTACTCCACGTACAATTCACTTCACTGTCGTCTTCTTCGCTACATTAAAGGTACTTTGGGTCATGGTCTACAATTCTCCTCACAATCCTCCCTGGTTCTCTCTGGATTCTCTGATGCTGATTGGGTAGGCGACCCTACTGATAGATGGTCTACAACTGGTTATTGTTTCTATCTAGGTGATGCTCTTATCTCCTGGAGAAGCAAGAAACAATATATTGTTTCTCGTTCCAGCACAGAGTCTGAATATCGTGCTCTAGCTAATGCCACTTCAGAATTACTATGGCTTCGTTGGCTTCTTACTGATATGGGGGCCCCACAGACATCACCCACTATTCTTCATTGTGAGAATCGTAGTGCTATTCAAATTGCACACAATGATGTATTCCATGAACAAACAAAGCACATTGAGAATGATTGTCACTTTGTTCGCCATCACCTTCAGAGCAACACTCTTCATCTCAAATCCATCTCTACCACCGATCAACCTGCAAATATCTTCACCAAAGCTCTTCATTCTCCTCGTTTCACCCAACTAATTCACAAACTCAAGGTGGTCTCAACTCTCCCAACTTAA

mRNA sequence

ATGTTCCTAAATGGGACCCTATCTGAAGAAGTCTATATGAAACCACCTCCTGGCACTACTCCACCACCACAGAAAGTATGCCTCTTTCGCCGTGCTCTCTATGGTCTCAAACAAGCTCTTCGAGCTTGGTTTGCAACATTTAGTTCCACTATTACCCAACTTGGGTTCACCTCCAGTTCTCATGATTCCGCCTTATTTACTCTTCAGACATCTAATGGTATTGTTCTCTTTCTTTTATATGTTGACGACATGATCATTACAGGTGATGATCCTCAAGTCATATCTGATTTGCAATGTTATTTGGGTCAGCATTTTGAGATGAAAGACTTAAGAAATCTCAGCTATTTTCTTAGTCTTGAGATCTCATCATCACCCAGTGGTTACTATTTATCTCAAGCAAAATATGCTTCTGACCTCCTTAACCGATCTAGTATTACTGATTCTGCCACAATCTCAACGCCTCTGGATCCTAATGTGCACCTCACTCTTTTTGATGGTGTTCCTCTTGACGATCCCACTTTATATCGACAACTTTCAGTTCATGACTACTCCACGTACAATTCACTTCACTGTCGTCTTCTTCGCTACATTAAAGGTACTTTGGGTCATGGTCTACAATTCTCCTCACAATCCTCCCTGGTTCTCTCTGGATTCTCTGATGCTGATTGGGTAGGCGACCCTACTGATAGATGGTCTACAACTGGTTATTGTTTCTATCTAGGTGATGCTCTTATCTCCTGGAGAAGCAAGAAACAATATATTGTTTCTCGTTCCAGCACAGAGTCTGAATATCGTGCTCTAGCTAATGCCACTTCAGAATTACTATGGCTTCGTTGGCTTCTTACTGATATGGGGGCCCCACAGACATCACCCACTATTCTTCATTGTGAGAATCGTAGTGCTATTCAAATTGCACACAATGATGTATTCCATGAACAAACAAAGCACATTGAGAATGATTGTCACTTTGTTCGCCATCACCTTCAGAGCAACACTCTTCATCTCAAATCCATCTCTACCACCGATCAACCTGCAAATATCTTCACCAAAGCTCTTCATTCTCCTCGTTTCACCCAACTAATTCACAAACTCAAGGTGGTCTCAACTCTCCCAACTTAA

Coding sequence (CDS)

ATGTTCCTAAATGGGACCCTATCTGAAGAAGTCTATATGAAACCACCTCCTGGCACTACTCCACCACCACAGAAAGTATGCCTCTTTCGCCGTGCTCTCTATGGTCTCAAACAAGCTCTTCGAGCTTGGTTTGCAACATTTAGTTCCACTATTACCCAACTTGGGTTCACCTCCAGTTCTCATGATTCCGCCTTATTTACTCTTCAGACATCTAATGGTATTGTTCTCTTTCTTTTATATGTTGACGACATGATCATTACAGGTGATGATCCTCAAGTCATATCTGATTTGCAATGTTATTTGGGTCAGCATTTTGAGATGAAAGACTTAAGAAATCTCAGCTATTTTCTTAGTCTTGAGATCTCATCATCACCCAGTGGTTACTATTTATCTCAAGCAAAATATGCTTCTGACCTCCTTAACCGATCTAGTATTACTGATTCTGCCACAATCTCAACGCCTCTGGATCCTAATGTGCACCTCACTCTTTTTGATGGTGTTCCTCTTGACGATCCCACTTTATATCGACAACTTTCAGTTCATGACTACTCCACGTACAATTCACTTCACTGTCGTCTTCTTCGCTACATTAAAGGTACTTTGGGTCATGGTCTACAATTCTCCTCACAATCCTCCCTGGTTCTCTCTGGATTCTCTGATGCTGATTGGGTAGGCGACCCTACTGATAGATGGTCTACAACTGGTTATTGTTTCTATCTAGGTGATGCTCTTATCTCCTGGAGAAGCAAGAAACAATATATTGTTTCTCGTTCCAGCACAGAGTCTGAATATCGTGCTCTAGCTAATGCCACTTCAGAATTACTATGGCTTCGTTGGCTTCTTACTGATATGGGGGCCCCACAGACATCACCCACTATTCTTCATTGTGAGAATCGTAGTGCTATTCAAATTGCACACAATGATGTATTCCATGAACAAACAAAGCACATTGAGAATGATTGTCACTTTGTTCGCCATCACCTTCAGAGCAACACTCTTCATCTCAAATCCATCTCTACCACCGATCAACCTGCAAATATCTTCACCAAAGCTCTTCATTCTCCTCGTTTCACCCAACTAATTCACAAACTCAAGGTGGTCTCAACTCTCCCAACTTAA

Protein sequence

MFLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSHDSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEISSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQLSVHDYSTYNSLHCRLLRYIKGTLGHGLQFSSQSSLVLSGFSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLWLRWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHLKSISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT

Homology

[Close]

BLAST of Cmc04g0097251 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 650.2 bits (1676), Expect = 1.1e-182
Identity = 332/395 (84.05%), Postives = 348/395 (88.10%), Query Frame = 0


Query: 2    FLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSH 61
            FLNGTLSEEVYMKPPPGTTPPPQKVCL RRALYGLKQA RAWFATFSSTITQLGFTSSSH
Sbjct: 952  FLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYGLKQAPRAWFATFSSTITQLGFTSSSH 1011

Query: 62   DSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEI 121
            DSALFT QT NGIVL LLYVDDMIITGDDPQ ISDLQCYLG+HFEMKDL NL+YFL LEI
Sbjct: 1012 DSALFTRQTPNGIVLLLLYVDDMIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEI 1071

Query: 122  SSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL--- 181
            SSS SGYYLSQAKYASDLLNRS ITDSAT STPLDPNV LT FDGVPL+DPTLYRQL   
Sbjct: 1072 SSSSSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGS 1131

Query: 182  -------------SVHDYSTY----NSLH----CRLLRYIKGTLGHGLQFSSQSSLVLSG 241
                         +VH  S +     ++H     R+LRYIKGTLGHGLQFSSQSSLVLSG
Sbjct: 1132 LIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSG 1191

Query: 242  FSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLWL 301
            FSDADW GDPTDR STTGYCFYLGDALISWRSKKQ +VSRSSTESEYRALA+ATSEL+WL
Sbjct: 1192 FSDADWAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWL 1251

Query: 302  RWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHLKS 361
            RWLLTDMGAPQTSPTILHC+N SAIQIAHNDVFHE+TKHIENDCHFVRHHLQSNTLHL+ 
Sbjct: 1252 RWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQP 1311

Query: 362  ISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
            ISTTDQPA+IFTKALHSPRFTQLIHKLKVVSTLP+
Sbjct: 1312 ISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLPS 1346

[Close]

BLAST of Cmc04g0097251 vs. NCBI nr
Match: KAA0065380.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 650.2 bits (1676), Expect = 1.1e-182
Identity = 332/395 (84.05%), Postives = 348/395 (88.10%), Query Frame = 0


Query: 2    FLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSH 61
            FLNGTLSEEVYMKPPPGTTPPPQKVCL RRALYGLKQA RAWFATFSSTITQLGFTSSSH
Sbjct: 920  FLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYGLKQAPRAWFATFSSTITQLGFTSSSH 979

Query: 62   DSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEI 121
            DSALFT QT NGIVL LLYVDDMIITGDDPQ ISDLQCYLG+HFEMKDL NL+YFL LEI
Sbjct: 980  DSALFTRQTPNGIVLLLLYVDDMIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEI 1039

Query: 122  SSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL--- 181
            SSS SGYYLSQAKYASDLLNRS ITDSAT STPLDPNV LT FDGVPL+DPTLYRQL   
Sbjct: 1040 SSSSSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGS 1099

Query: 182  -------------SVHDYSTY----NSLH----CRLLRYIKGTLGHGLQFSSQSSLVLSG 241
                         +VH  S +     ++H     R+LRYIKGTLGHGLQFSSQSSLVLSG
Sbjct: 1100 LIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSG 1159

Query: 242  FSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLWL 301
            FSDADW GDPTDR STTGYCFYLGDALISWRSKKQ +VSRSSTESEYRALA+ATSEL+WL
Sbjct: 1160 FSDADWAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWL 1219

Query: 302  RWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHLKS 361
            RWLLTDMGAPQTSPTILHC+N SAIQIAHNDVFHE+TKHIENDCHFVRHHLQSNTLHL+ 
Sbjct: 1220 RWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQP 1279

Query: 362  ISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
            ISTTDQPA+IFTKALHSPRFTQLIHKLKVVSTLP+
Sbjct: 1280 ISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLPS 1314

[Close]

BLAST of Cmc04g0097251 vs. NCBI nr
Match: KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 650.2 bits (1676), Expect = 1.1e-182
Identity = 332/395 (84.05%), Postives = 348/395 (88.10%), Query Frame = 0


Query: 2    FLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSH 61
            FLNGTLSEEVYMKPPPGTTPPPQKVCL RRALYGLKQA RAWFATFSSTITQLGFTSSSH
Sbjct: 952  FLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYGLKQAPRAWFATFSSTITQLGFTSSSH 1011

Query: 62   DSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEI 121
            DSALFT QT NGIVL LLYVDDMIITGDDPQ ISDLQCYLG+HFEMKDL NL+YFL LEI
Sbjct: 1012 DSALFTRQTPNGIVLLLLYVDDMIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEI 1071

Query: 122  SSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL--- 181
            SSS SGYYLSQAKYASDLLNRS ITDSAT STPLDPNV LT FDGVPL+DPTLYRQL   
Sbjct: 1072 SSSSSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGS 1131

Query: 182  -------------SVHDYSTY----NSLH----CRLLRYIKGTLGHGLQFSSQSSLVLSG 241
                         +VH  S +     ++H     R+LRYIKGTLGHGLQFSSQSSLVLSG
Sbjct: 1132 LIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSG 1191

Query: 242  FSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLWL 301
            FSDADW GDPTDR STTGYCFYLGDALISWRSKKQ +VSRSSTESEYRALA+ATSEL+WL
Sbjct: 1192 FSDADWAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWL 1251

Query: 302  RWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHLKS 361
            RWLLTDMGAPQTSPTILHC+N SAIQIAHNDVFHE+TKHIENDCHFVRHHLQSNTLHL+ 
Sbjct: 1252 RWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQP 1311

Query: 362  ISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
            ISTTDQPA+IFTKALHSPRFTQLIHKLKVVSTLP+
Sbjct: 1312 ISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLPS 1346

[Close]

BLAST of Cmc04g0097251 vs. NCBI nr
Match: TYK12316.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK28111.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 650.2 bits (1676), Expect = 1.1e-182
Identity = 332/395 (84.05%), Postives = 348/395 (88.10%), Query Frame = 0


Query: 2   FLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSH 61
           FLNGTLSEEVYMKPPPGTTPPPQKVCL RRALYGLKQA RAWFATFSSTITQLGFTSSSH
Sbjct: 368 FLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYGLKQAPRAWFATFSSTITQLGFTSSSH 427

Query: 62  DSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEI 121
           DSALFT QT NGIVL LLYVDDMIITGDDPQ ISDLQCYLG+HFEMKDL NL+YFL LEI
Sbjct: 428 DSALFTRQTPNGIVLLLLYVDDMIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEI 487

Query: 122 SSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL--- 181
           SSS SGYYLSQAKYASDLLNRS ITDSAT STPLDPNV LT FDGVPL+DPTLYRQL   
Sbjct: 488 SSSSSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGS 547

Query: 182 -------------SVHDYSTY----NSLH----CRLLRYIKGTLGHGLQFSSQSSLVLSG 241
                        +VH  S +     ++H     R+LRYIKGTLGHGLQFSSQSSLVLSG
Sbjct: 548 LIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSG 607

Query: 242 FSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLWL 301
           FSDADW GDPTDR STTGYCFYLGDALISWRSKKQ +VSRSSTESEYRALA+ATSEL+WL
Sbjct: 608 FSDADWAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWL 667

Query: 302 RWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHLKS 361
           RWLLTDMGAPQTSPTILHC+N SAIQIAHNDVFHE+TKHIENDCHFVRHHLQSNTLHL+ 
Sbjct: 668 RWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQP 727

Query: 362 ISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
           ISTTDQPA+IFTKALHSPRFTQLIHKLKVVSTLP+
Sbjct: 728 ISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLPS 762

[Close]

BLAST of Cmc04g0097251 vs. NCBI nr
Match: KAA0041166.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 642.9 bits (1657), Expect = 1.7e-180
Identity = 327/395 (82.78%), Postives = 346/395 (87.59%), Query Frame = 0


Query: 2   FLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSH 61
           FLNGTLSEEVYMKPPPGTTPPPQKVCL RRALYGLKQA RAWFATFSSTITQLGFTSSSH
Sbjct: 532 FLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYGLKQAPRAWFATFSSTITQLGFTSSSH 591

Query: 62  DSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEI 121
           DSALFT QT NGIVL LLYVDDMIITGDDPQ ISDLQCYLG+HFEMKDL NL+YFL LEI
Sbjct: 592 DSALFTRQTPNGIVLLLLYVDDMIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEI 651

Query: 122 SSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL--- 181
           SSS SGYYLSQAKYASDL+NRS ITDSAT STPLDPNV LT FDGVPL+DPTLYRQL   
Sbjct: 652 SSSSSGYYLSQAKYASDLVNRSGITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGS 711

Query: 182 -------------SVHDYSTY----NSLH----CRLLRYIKGTLGHGLQFSSQSSLVLSG 241
                        ++H  S +     ++H     R+LRYIKGTLGHGLQFSSQSSLVLSG
Sbjct: 712 LIYLTVTRPDIAYAIHIVSQFMAAPRTIHFTVVLRILRYIKGTLGHGLQFSSQSSLVLSG 771

Query: 242 FSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLWL 301
           FSDADW GDPTDR STTGYCFYLGDALISWRSKKQ +VSRSSTESEYRAL +AT+EL+WL
Sbjct: 772 FSDADWAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALVDATTELIWL 831

Query: 302 RWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHLKS 361
           RWLLTDMGAPQTSPTILHC+N SAIQIAHNDVFHE+TKHIENDCHFV HHLQSNTLHL+ 
Sbjct: 832 RWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFHERTKHIENDCHFVCHHLQSNTLHLQP 891

Query: 362 ISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
           ISTTDQPA+IFTKALHSPRFTQLIHKLKVVSTLP+
Sbjct: 892 ISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLPS 926

[Close]

BLAST of Cmc04g0097251 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 6.3e-77
Identity = 161/397 (40.55%), Postives = 227/397 (57.18%), Query Frame = 0


Query: 2    FLNGTLSEEVYMKPPPG--TTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSS 61
            FL GTL+++VYM  PPG      P  VC  R+ALYGLKQA RAW+    + +  +GF +S
Sbjct: 1070 FLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNS 1129

Query: 62   SHDSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSL 121
              D++LF LQ    IV  L+YVDD++ITG+DP ++ +    L Q F +KD   L YFL +
Sbjct: 1130 VSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGI 1189

Query: 122  EISSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL- 181
            E    P+G +LSQ +Y  DLL R+++  +  ++TP+ P+  L+L+ G  L DPT YR + 
Sbjct: 1190 EAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIV 1249

Query: 182  ---------------SVHDYSTYNSLHC--------RLLRYIKGTLGHGLQFSSQSSLVL 241
                           +V+  S +  +          R+LRY+ GT  HG+     ++L L
Sbjct: 1250 GSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSL 1309

Query: 242  SGFSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELL 301
              +SDADW GD  D  ST GY  YLG   ISW SKKQ  V RSSTE+EYR++AN +SE+ 
Sbjct: 1310 HAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQ 1369

Query: 302  WLRWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHL 361
            W+  LLT++G   T P +++C+N  A  +  N VFH + KHI  D HF+R+ +QS  L +
Sbjct: 1370 WICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRV 1429

Query: 362  KSISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
              +ST DQ A+  TK L    F     K+ V    P+
Sbjct: 1430 VHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRVPPS 1466

[Close]

BLAST of Cmc04g0097251 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 4.5e-75
Identity = 161/398 (40.45%), Postives = 226/398 (56.78%), Query Frame = 0


Query: 2    FLNGTLSEEVYMKPPPGTTPP--PQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSS 61
            FL GTL++EVYM  PPG      P  VC  R+A+YGLKQA RAW+    + +  +GF +S
Sbjct: 1053 FLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNS 1112

Query: 62   SHDSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSL 121
              D++LF LQ    I+  L+YVDD++ITG+D  ++      L Q F +K+  +L YFL +
Sbjct: 1113 ISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGI 1172

Query: 122  EISSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL- 181
            E    P G +LSQ +Y  DLL R+++  +  ++TP+  +  LTL  G  L DPT YR + 
Sbjct: 1173 EAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIV 1232

Query: 182  ---------------SVHDYSTY---------NSLHCRLLRYIKGTLGHGLQFSSQSSLV 241
                           +V+  S Y         N+L  R+LRY+ GT  HG+     ++L 
Sbjct: 1233 GSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALK-RVLRYLAGTPDHGIFLKKGNTLS 1292

Query: 242  LSGFSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSEL 301
            L  +SDADW GD  D  ST GY  YLG   ISW SKKQ  V RSSTE+EYR++AN +SEL
Sbjct: 1293 LHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEL 1352

Query: 302  LWLRWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLH 361
             W+  LLT++G   + P +++C+N  A  +  N VFH + KHI  D HF+R+ +QS  L 
Sbjct: 1353 QWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALR 1412

Query: 362  LKSISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
            +  +ST DQ A+  TK L    F     K+ V+   P+
Sbjct: 1413 VVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKVPPS 1449

[Close]

BLAST of Cmc04g0097251 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 225.3 bits (573), Expect = 1.1e-57
Identity = 141/393 (35.88%), Postives = 210/393 (53.44%), Query Frame = 0


Query: 2    FLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSH 61
            FLNGTL EE+YM+ P G +     VC   +A+YGLKQA R WF  F   + +  F +SS 
Sbjct: 1007 FLNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSV 1066

Query: 62   DSALFTLQTS--NGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSL 121
            D  ++ L     N  +  LLYVDD++I   D   +++ + YL + F M DL  + +F+ +
Sbjct: 1067 DRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGI 1126

Query: 122  EISSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL- 181
             I       YLSQ+ Y   +L++ ++ +   +STPL   ++  L +    D  T  R L 
Sbjct: 1127 RIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNS-DEDCNTPCRSLI 1186

Query: 182  ----------------SVHDYSTYNSLH--------CRLLRYIKGTLGHGLQFSSQSSL- 241
                            +V+  S Y+S +         R+LRY+KGT+   L F    +  
Sbjct: 1187 GCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFE 1246

Query: 242  -VLSGFSDADWVGDPTDRWSTTGYCFYLGD-ALISWRSKKQYIVSRSSTESEYRALANAT 301
              + G+ D+DW G   DR STTGY F + D  LI W +K+Q  V+ SSTE+EY AL  A 
Sbjct: 1247 NKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAV 1306

Query: 302  SELLWLRWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSN 361
             E LWL++LLT +     +P  ++ +N+  I IA+N   H++ KHI+   HF R  +Q+N
Sbjct: 1307 REALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNN 1366

Query: 362  TLHLKSISTTDQPANIFTKALHSPRFTQLIHKL 365
             + L+ I T +Q A+IFTK L + RF +L  KL
Sbjct: 1367 VICLEYIPTENQLADIFTKPLPAARFVELRDKL 1398

[Close]

BLAST of Cmc04g0097251 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 8.9e-47
Identity = 126/392 (32.14%), Postives = 202/392 (51.53%), Query Frame = 0


Query: 2    FLNGTLSEEVYMKPPPGTTPPPQK--VCLFRRALYGLKQALRAWFATFSSTITQLGFTSS 61
            FL+G L EE+YM+ P G     +K  VC   ++LYGLKQA R W+  F S +    +  +
Sbjct: 927  FLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKT 986

Query: 62   SHDSALFTLQTS-NGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLS 121
              D  ++  + S N  ++ LLYVDDM+I G D  +I+ L+  L + F+MKDL      L 
Sbjct: 987  YSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILG 1046

Query: 122  LEI--SSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHL--------------- 181
            ++I    +    +LSQ KY   +L R ++ ++  +STPL  ++ L               
Sbjct: 1047 MKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNM 1106

Query: 182  ----------TLFDGVPLDDPTLYRQLSVHDYSTYN--SLHCR----LLRYIKGTLGHGL 241
                      +L   +    P +   + V      N    H      +LRY++GT G  L
Sbjct: 1107 AKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL 1166

Query: 242  QFSSQSSLVLSGFSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYR 301
             F   S  +L G++DAD  GD  +R S+TGY F      ISW+SK Q  V+ S+TE+EY 
Sbjct: 1167 CFGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1226

Query: 302  ALANATSELLWLRWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVR 358
            A      E++WL+  L ++G  Q    +++C+++SAI ++ N ++H +TKHI+   H++R
Sbjct: 1227 AATETGKEMIWLKRFLQELGLHQ-KEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIR 1286

[Close]

BLAST of Cmc04g0097251 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-34
Identity = 88/223 (39.46%), Postives = 125/223 (56.05%), Query Frame = 0


Query: 78  LLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEISSSPSGYYLSQAKYAS 137
           LLYVDD+++TG    +++ L   L   F MKDL  + YFL ++I + PSG +LSQ KYA 
Sbjct: 4   LLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAE 63

Query: 138 DLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQ---------LSVHDYSTYNS 197
            +LN + + D   +STPL   ++ ++       DP+ +R          L+  D S   +
Sbjct: 64  QILNNAGMLDCKPMSTPLPLKLNSSV-STAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 123

Query: 198 LHC---------------RLLRYIKGTLGHGLQFSSQSSLVLSGFSDADWVGDPTDRWST 257
           + C               R+LRY+KGT+ HGL     S L +  F D+DW G  + R ST
Sbjct: 124 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRST 183

Query: 258 TGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLW 277
           TG+C +LG  +ISW +K+Q  VSRSSTE+EYRALA   +EL W
Sbjct: 184 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc04g0097251 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 650.2 bits (1676), Expect = 5.2e-183
Identity = 332/395 (84.05%), Postives = 348/395 (88.10%), Query Frame = 0


Query: 2    FLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSH 61
            FLNGTLSEEVYMKPPPGTTPPPQKVCL RRALYGLKQA RAWFATFSSTITQLGFTSSSH
Sbjct: 952  FLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYGLKQAPRAWFATFSSTITQLGFTSSSH 1011

Query: 62   DSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEI 121
            DSALFT QT NGIVL LLYVDDMIITGDDPQ ISDLQCYLG+HFEMKDL NL+YFL LEI
Sbjct: 1012 DSALFTRQTPNGIVLLLLYVDDMIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEI 1071

Query: 122  SSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL--- 181
            SSS SGYYLSQAKYASDLLNRS ITDSAT STPLDPNV LT FDGVPL+DPTLYRQL   
Sbjct: 1072 SSSSSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGS 1131

Query: 182  -------------SVHDYSTY----NSLH----CRLLRYIKGTLGHGLQFSSQSSLVLSG 241
                         +VH  S +     ++H     R+LRYIKGTLGHGLQFSSQSSLVLSG
Sbjct: 1132 LIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSG 1191

Query: 242  FSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLWL 301
            FSDADW GDPTDR STTGYCFYLGDALISWRSKKQ +VSRSSTESEYRALA+ATSEL+WL
Sbjct: 1192 FSDADWAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWL 1251

Query: 302  RWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHLKS 361
            RWLLTDMGAPQTSPTILHC+N SAIQIAHNDVFHE+TKHIENDCHFVRHHLQSNTLHL+ 
Sbjct: 1252 RWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQP 1311

Query: 362  ISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
            ISTTDQPA+IFTKALHSPRFTQLIHKLKVVSTLP+
Sbjct: 1312 ISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLPS 1346

[Close]

BLAST of Cmc04g0097251 vs. ExPASy TrEMBL
Match: A0A5D3DWU7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00160 PE=4 SV=1)

HSP 1 Score: 650.2 bits (1676), Expect = 5.2e-183
Identity = 332/395 (84.05%), Postives = 348/395 (88.10%), Query Frame = 0


Query: 2   FLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSH 61
           FLNGTLSEEVYMKPPPGTTPPPQKVCL RRALYGLKQA RAWFATFSSTITQLGFTSSSH
Sbjct: 368 FLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYGLKQAPRAWFATFSSTITQLGFTSSSH 427

Query: 62  DSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEI 121
           DSALFT QT NGIVL LLYVDDMIITGDDPQ ISDLQCYLG+HFEMKDL NL+YFL LEI
Sbjct: 428 DSALFTRQTPNGIVLLLLYVDDMIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEI 487

Query: 122 SSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL--- 181
           SSS SGYYLSQAKYASDLLNRS ITDSAT STPLDPNV LT FDGVPL+DPTLYRQL   
Sbjct: 488 SSSSSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGS 547

Query: 182 -------------SVHDYSTY----NSLH----CRLLRYIKGTLGHGLQFSSQSSLVLSG 241
                        +VH  S +     ++H     R+LRYIKGTLGHGLQFSSQSSLVLSG
Sbjct: 548 LIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSG 607

Query: 242 FSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLWL 301
           FSDADW GDPTDR STTGYCFYLGDALISWRSKKQ +VSRSSTESEYRALA+ATSEL+WL
Sbjct: 608 FSDADWAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWL 667

Query: 302 RWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHLKS 361
           RWLLTDMGAPQTSPTILHC+N SAIQIAHNDVFHE+TKHIENDCHFVRHHLQSNTLHL+ 
Sbjct: 668 RWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQP 727

Query: 362 ISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
           ISTTDQPA+IFTKALHSPRFTQLIHKLKVVSTLP+
Sbjct: 728 ISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLPS 762

[Close]

BLAST of Cmc04g0097251 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 650.2 bits (1676), Expect = 5.2e-183
Identity = 332/395 (84.05%), Postives = 348/395 (88.10%), Query Frame = 0


Query: 2    FLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSH 61
            FLNGTLSEEVYMKPPPGTTPPPQKVCL RRALYGLKQA RAWFATFSSTITQLGFTSSSH
Sbjct: 952  FLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYGLKQAPRAWFATFSSTITQLGFTSSSH 1011

Query: 62   DSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEI 121
            DSALFT QT NGIVL LLYVDDMIITGDDPQ ISDLQCYLG+HFEMKDL NL+YFL LEI
Sbjct: 1012 DSALFTRQTPNGIVLLLLYVDDMIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEI 1071

Query: 122  SSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL--- 181
            SSS SGYYLSQAKYASDLLNRS ITDSAT STPLDPNV LT FDGVPL+DPTLYRQL   
Sbjct: 1072 SSSSSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGS 1131

Query: 182  -------------SVHDYSTY----NSLH----CRLLRYIKGTLGHGLQFSSQSSLVLSG 241
                         +VH  S +     ++H     R+LRYIKGTLGHGLQFSSQSSLVLSG
Sbjct: 1132 LIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSG 1191

Query: 242  FSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLWL 301
            FSDADW GDPTDR STTGYCFYLGDALISWRSKKQ +VSRSSTESEYRALA+ATSEL+WL
Sbjct: 1192 FSDADWAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWL 1251

Query: 302  RWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHLKS 361
            RWLLTDMGAPQTSPTILHC+N SAIQIAHNDVFHE+TKHIENDCHFVRHHLQSNTLHL+ 
Sbjct: 1252 RWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQP 1311

Query: 362  ISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
            ISTTDQPA+IFTKALHSPRFTQLIHKLKVVSTLP+
Sbjct: 1312 ISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLPS 1346

[Close]

BLAST of Cmc04g0097251 vs. ExPASy TrEMBL
Match: A0A5A7VDW0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00430 PE=4 SV=1)

HSP 1 Score: 650.2 bits (1676), Expect = 5.2e-183
Identity = 332/395 (84.05%), Postives = 348/395 (88.10%), Query Frame = 0


Query: 2    FLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSH 61
            FLNGTLSEEVYMKPPPGTTPPPQKVCL RRALYGLKQA RAWFATFSSTITQLGFTSSSH
Sbjct: 920  FLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYGLKQAPRAWFATFSSTITQLGFTSSSH 979

Query: 62   DSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEI 121
            DSALFT QT NGIVL LLYVDDMIITGDDPQ ISDLQCYLG+HFEMKDL NL+YFL LEI
Sbjct: 980  DSALFTRQTPNGIVLLLLYVDDMIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEI 1039

Query: 122  SSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL--- 181
            SSS SGYYLSQAKYASDLLNRS ITDSAT STPLDPNV LT FDGVPL+DPTLYRQL   
Sbjct: 1040 SSSSSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGS 1099

Query: 182  -------------SVHDYSTY----NSLH----CRLLRYIKGTLGHGLQFSSQSSLVLSG 241
                         +VH  S +     ++H     R+LRYIKGTLGHGLQFSSQSSLVLSG
Sbjct: 1100 LIYLTVTRPDIAYAVHIVSQFMAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSG 1159

Query: 242  FSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLWL 301
            FSDADW GDPTDR STTGYCFYLGDALISWRSKKQ +VSRSSTESEYRALA+ATSEL+WL
Sbjct: 1160 FSDADWAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALADATSELIWL 1219

Query: 302  RWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHLKS 361
            RWLLTDMGAPQTSPTILHC+N SAIQIAHNDVFHE+TKHIENDCHFVRHHLQSNTLHL+ 
Sbjct: 1220 RWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFHERTKHIENDCHFVRHHLQSNTLHLQP 1279

Query: 362  ISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
            ISTTDQPA+IFTKALHSPRFTQLIHKLKVVSTLP+
Sbjct: 1280 ISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLPS 1314

[Close]

BLAST of Cmc04g0097251 vs. ExPASy TrEMBL
Match: A0A5A7TGJ6 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00960 PE=4 SV=1)

HSP 1 Score: 642.9 bits (1657), Expect = 8.3e-181
Identity = 327/395 (82.78%), Postives = 346/395 (87.59%), Query Frame = 0


Query: 2   FLNGTLSEEVYMKPPPGTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLGFTSSSH 61
           FLNGTLSEEVYMKPPPGTTPPPQKVCL RRALYGLKQA RAWFATFSSTITQLGFTSSSH
Sbjct: 532 FLNGTLSEEVYMKPPPGTTPPPQKVCLLRRALYGLKQAPRAWFATFSSTITQLGFTSSSH 591

Query: 62  DSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEI 121
           DSALFT QT NGIVL LLYVDDMIITGDDPQ ISDLQCYLG+HFEMKDL NL+YFL LEI
Sbjct: 592 DSALFTRQTPNGIVLLLLYVDDMIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEI 651

Query: 122 SSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQL--- 181
           SSS SGYYLSQAKYASDL+NRS ITDSAT STPLDPNV LT FDGVPL+DPTLYRQL   
Sbjct: 652 SSSSSGYYLSQAKYASDLVNRSGITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGS 711

Query: 182 -------------SVHDYSTY----NSLH----CRLLRYIKGTLGHGLQFSSQSSLVLSG 241
                        ++H  S +     ++H     R+LRYIKGTLGHGLQFSSQSSLVLSG
Sbjct: 712 LIYLTVTRPDIAYAIHIVSQFMAAPRTIHFTVVLRILRYIKGTLGHGLQFSSQSSLVLSG 771

Query: 242 FSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLWL 301
           FSDADW GDPTDR STTGYCFYLGDALISWRSKKQ +VSRSSTESEYRAL +AT+EL+WL
Sbjct: 772 FSDADWAGDPTDRRSTTGYCFYLGDALISWRSKKQSVVSRSSTESEYRALVDATTELIWL 831

Query: 302 RWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVRHHLQSNTLHLKS 361
           RWLLTDMGAPQTSPTILHC+N SAIQIAHNDVFHE+TKHIENDCHFV HHLQSNTLHL+ 
Sbjct: 832 RWLLTDMGAPQTSPTILHCDNHSAIQIAHNDVFHERTKHIENDCHFVCHHLQSNTLHLQP 891

Query: 362 ISTTDQPANIFTKALHSPRFTQLIHKLKVVSTLPT 373
           ISTTDQPA+IFTKALHSPRFTQLIHKLKVVSTLP+
Sbjct: 892 ISTTDQPADIFTKALHSPRFTQLIHKLKVVSTLPS 926

[Close]

BLAST of Cmc04g0097251 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 266.5 bits (680), Expect = 3.1e-71
Identity = 148/354 (41.81%), Postives = 205/354 (57.91%), Query Frame = 0


Query: 2   FLNGTLSEEVYMKPPP------GTTPPPQKVCLFRRALYGLKQALRAWFATFSSTITQLG 61
           FLNG L EE+YMK PP      G + PP  VC  ++++YGLKQA R WF  FS T+   G
Sbjct: 199 FLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFG 258

Query: 62  FTSSSHDSALFTLQTSNGIVLFLLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSY 121
           F  S  D   F   T+   +  L+YVDD+II  ++   + +L+  L   F+++DL  L Y
Sbjct: 259 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318

Query: 122 FLSLEISSSPSGYYLSQAKYASDLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLY 181
           FL LEI+ S +G  + Q KYA DLL+ + +      S P+DP+V  +   G    D   Y
Sbjct: 319 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAY 378

Query: 182 RQL----------------SVHDYSTYNSLH--------CRLLRYIKGTLGHGLQFSSQS 241
           R+L                +V+  S ++            ++L YIKGT+G GL +SSQ+
Sbjct: 379 RRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQA 438

Query: 242 SLVLSGFSDADWVGDPTDRWSTTGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANAT 301
            + L  FSDA +      R ST GYC +LG +LISW+SKKQ +VS+SS E+EYRAL+ AT
Sbjct: 439 EMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFAT 498

Query: 302 SELLWLRWLLTDMGAPQTSPTILHCENRSAIQIAHNDVFHEQTKHIENDCHFVR 326
            E++WL     ++  P + PT+L C+N +AI IA N VFHE+TKHIE+DCH VR
Sbjct: 499 DEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVR 552

[Close]

BLAST of Cmc04g0097251 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 149.1 bits (375), Expect = 7.3e-36
Identity = 88/223 (39.46%), Postives = 125/223 (56.05%), Query Frame = 0


Query: 78  LLYVDDMIITGDDPQVISDLQCYLGQHFEMKDLRNLSYFLSLEISSSPSGYYLSQAKYAS 137
           LLYVDD+++TG    +++ L   L   F MKDL  + YFL ++I + PSG +LSQ KYA 
Sbjct: 4   LLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAE 63

Query: 138 DLLNRSSITDSATISTPLDPNVHLTLFDGVPLDDPTLYRQ---------LSVHDYSTYNS 197
            +LN + + D   +STPL   ++ ++       DP+ +R          L+  D S   +
Sbjct: 64  QILNNAGMLDCKPMSTPLPLKLNSSV-STAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 123

Query: 198 LHC---------------RLLRYIKGTLGHGLQFSSQSSLVLSGFSDADWVGDPTDRWST 257
           + C               R+LRY+KGT+ HGL     S L +  F D+DW G  + R ST
Sbjct: 124 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRST 183

Query: 258 TGYCFYLGDALISWRSKKQYIVSRSSTESEYRALANATSELLW 277
           TG+C +LG  +ISW +K+Q  VSRSSTE+EYRALA   +EL W
Sbjct: 184 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc04g0097251 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 53.1 bits (126), Expect = 5.4e-07
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 192 RLLRYIKGTLGHGLQFSSQSSLVLSGFSDADWVGDPTDRWSTTGYC 238
           ++L Y+KGT+G GL +S+ S L L  F+D+DW   P  R S TG+C
Sbjct: 34  KVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Cmc04g0097251 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043149.1	1.1e-182	84.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0065380.1	1.1e-182	84.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0036574.1	1.1e-182	84.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK12316.1	1.1e-182	84.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0041166.1	1.7e-180	82.78	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0097251 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	6.3e-77	40.55	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.5e-75	40.45	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.1e-57	35.88	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	8.9e-47	32.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92519	1.0e-34	39.46	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc04g0097251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DG18	5.2e-183	84.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DWU7	5.2e-183	84.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SZ66	5.2e-183	84.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VDW0	5.2e-183	84.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TGJ6	8.3e-181	82.78	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Cmc04g0097251 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.1e-71	41.81	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	7.3e-36	39.46	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	5.4e-07	47.83	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..155 e-value: 4.9E-36 score: 124.6
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 231..367
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 231..367
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 217..355 e-value: 1.00372E-75 score: 228.507
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..322

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0097251.1	Cmc04g0097251.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding