Cmc04g0096421 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0096421
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Ty1-H Gag-Pol polyprotein
Location	CMiso1.1chr04: 10658570 .. 10659298 (-)
RNA-Seq Expression	Cmc04g0096421
Synteny	Cmc04g0096421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAAGAGGCCATTAAAAGTGAACTTGATTCATTGGTCATGAATCATACATGGGACTTAGTGGACCTTCCTATGGGAAACAAGCCAATTAGGTGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCAATGATTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTGGGGCCTTGATTGCATTAGCTGCAATACATAGCCTTCTTATTCACAAAATGGACGTAAAAACTGCTTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATTTCTGGCCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTATACGGTCTCAAGCATGCTCCCAAGCAGTGGTATGAAAAGTTTAATAATACGTTGATAAAGAATGGATTTAAAATAAATTCCTCAGACACGTGTGTTTATTCAAAAGTGTTTAGAGCTGATTGCATATTAATATGTCTATATGTTGATGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTATTTCTCTCATCACACTTTGAAATGAAAGACCTAGGAGAAGCAGACATAATCCTAGGTGTTAGAATCAGAAAAAGAAAACTAGTTTGTCCCTATGAAAATCTCACTACATGGATAAAATACTAA

mRNA sequence

ATGTGGAAAGAGGCCATTAAAAGTGAACTTGATTCATTGGTCATGAATCATACATGGGACTTAGTGGACCTTCCTATGGGAAACAAGCCAATTAGGTGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCAATGATTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTGGGGCCTTGATTGCATTAGCTGCAATACATAGCCTTCTTATTCACAAAATGGACGTAAAAACTGCTTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATTTCTGGCCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTATACGGTCTCAAGCATGCTCCCAAGCAGTGGTATGAAAAGTTTAATAATACGTTGATAAAGAATGGATTTAAAATAAATTCCTCAGACACGTGTGTTTATTCAAAAGTGTTTAGAGCTGATTGCATATTAATATGTCTATATGTTGATGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTATTTCTCTCATCACACTTTGAAATGAAAGACCTAGGAGAAGCAGACATAATCCTAGGTGTTAGAATCAGAAAAAGAAAACTAGTTTGTCCCTATGAAAATCTCACTACATGGATAAAATACTAA

Coding sequence (CDS)

ATGTGGAAAGAGGCCATTAAAAGTGAACTTGATTCATTGGTCATGAATCATACATGGGACTTAGTGGACCTTCCTATGGGAAACAAGCCAATTAGGTGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCAATGATTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTGGGGCCTTGATTGCATTAGCTGCAATACATAGCCTTCTTATTCACAAAATGGACGTAAAAACTGCTTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATTTCTGGCCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTATACGGTCTCAAGCATGCTCCCAAGCAGTGGTATGAAAAGTTTAATAATACGTTGATAAAGAATGGATTTAAAATAAATTCCTCAGACACGTGTGTTTATTCAAAAGTGTTTAGAGCTGATTGCATATTAATATGTCTATATGTTGATGACATGTTAATCTTTGGAACAAACATGGAGTTAATAACTGATACTAAGTTATTTCTCTCATCACACTTTGAAATGAAAGACCTAGGAGAAGCAGACATAATCCTAGGTGTTAGAATCAGAAAAAGAAAACTAGTTTGTCCCTATGAAAATCTCACTACATGGATAAAATACTAA

Protein sequence

MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILICLYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRKRKLVCPYENLTTWIKY

Homology

[Close]

BLAST of Cmc04g0096421 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 434.5 bits (1116), Expect = 6.0e-118
Identity = 211/228 (92.54%), Postives = 218/228 (95.61%), Query Frame = 0


Query: 1    MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYT 60
            MWKEAIKSELDSL MNHTW+LVDLPMGNKPIRCKWIFKRKTKPNG IERYKARLVVVGYT
Sbjct: 848  MWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYT 907

Query: 61   QKQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGF 120
            QKQG DYFDTYSPVTKITTI ALIALAAIH+LLIH+MDVKTAFLNG+LEEEIYMTQPEGF
Sbjct: 908  QKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGNLEEEIYMTQPEGF 967

Query: 121  KISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILI 180
            KISGQENKVCKLRKSLYGLK APKQWYEKFNNTLI NGFKINSSDTCVYSK+  ADCILI
Sbjct: 968  KISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGADCILI 1027

Query: 181  CLYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRKRK 229
            CLYVDDMLIFGTNMELITDTK FLSSHFEMKDLGEAD+ILGV+IRK K
Sbjct: 1028 CLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEADVILGVKIRKNK 1075

[Close]

BLAST of Cmc04g0096421 vs. NCBI nr
Match: KAD6453934.1 (hypothetical protein E3N88_08640 [Mikania micrantha])

HSP 1 Score: 341.7 bits (875), Expect = 5.3e-90
Identity = 159/226 (70.35%), Postives = 196/226 (86.73%), Query Frame = 0


Query: 1   MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYT 60
           +WKEAIKSE+DS++ NHTW+L DLP GNKPI  KWIFK+K +P+G++++YKARLV+ G+T
Sbjct: 199 LWKEAIKSEVDSILSNHTWELTDLPKGNKPIGSKWIFKKKLRPDGTVDKYKARLVIRGFT 258

Query: 61  QKQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGF 120
           QK G DYFDTYSPVTKITTI +LI++AAI+ LLIH+MDVKTAFLNGDL+EEIYM QPEGF
Sbjct: 259 QKHGLDYFDTYSPVTKITTIRSLISIAAINGLLIHQMDVKTAFLNGDLDEEIYMLQPEGF 318

Query: 121 KISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILI 180
            +SG E+KVCKLRKSLYGLK APK+WYEKF+ TL ++G+ +N+SD+CVYSK  +   +LI
Sbjct: 319 VVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQDGYIVNNSDSCVYSKRSKTGYVLI 378

Query: 181 CLYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRK 227
           CLYVDDMLIFG +M  I  TK FLSS FEMKDLGEAD+ILGV+I++
Sbjct: 379 CLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEADVILGVKIKR 424

[Close]

BLAST of Cmc04g0096421 vs. NCBI nr
Match: KAG7551885.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 331.6 bits (849), Expect = 5.5e-87
Identity = 151/225 (67.11%), Postives = 188/225 (83.56%), Query Frame = 0


Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQ 61
            WKEA+ +E DS++ NHTW++VDLP G K IRCKWI K+K K +GSI+++KARLV  G+ Q
Sbjct: 821  WKEAVNNEFDSIMTNHTWEIVDLPRGCKAIRCKWILKKKFKADGSIDKFKARLVAQGFAQ 880

Query: 62   KQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGFK 121
            KQG DYFDTY+PVTKI +I  L+A+A+ H L++H+MDVKTAFLNGDL EEIYM QPEGF 
Sbjct: 881  KQGVDYFDTYAPVTKIASIRMLLAVASAHKLVVHQMDVKTAFLNGDLHEEIYMMQPEGFI 940

Query: 122  ISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILIC 181
            I GQENKVCKL KSLYGLK APKQW+EKF+NTL++NGF  N  DTCV+SKV     ++IC
Sbjct: 941  IEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLENGFVSNEGDTCVFSKVHEHGYVIIC 1000

Query: 182  LYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRK 227
            LYVDDMLI GT++E++ DTK+FLSS F+MKDLGEAD+ILG+++ K
Sbjct: 1001 LYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEADVILGIKVVK 1045

[Close]

BLAST of Cmc04g0096421 vs. NCBI nr
Match: KAG7592238.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 331.6 bits (849), Expect = 5.5e-87
Identity = 151/225 (67.11%), Postives = 188/225 (83.56%), Query Frame = 0


Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQ 61
            WKEA+ +E DS++ NHTW++VDLP G K IRCKWI K+K K +GSI+++KARLV  G+ Q
Sbjct: 821  WKEAVNNEFDSIMTNHTWEIVDLPRGCKAIRCKWILKKKFKADGSIDKFKARLVAQGFAQ 880

Query: 62   KQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGFK 121
            KQG DYFDTY+PVTKI +I  L+A+A+ H L++H+MDVKTAFLNGDL EEIYM QPEGF 
Sbjct: 881  KQGVDYFDTYAPVTKIASIRMLLAVASAHKLVVHQMDVKTAFLNGDLHEEIYMMQPEGFI 940

Query: 122  ISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILIC 181
            I GQENKVCKL KSLYGLK APKQW+EKF+NTL++NGF  N  DTCV+SKV     ++IC
Sbjct: 941  IEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLENGFVSNEGDTCVFSKVHEHGYVIIC 1000

Query: 182  LYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRK 227
            LYVDDMLI GT++E++ DTK+FLSS F+MKDLGEAD+ILG+++ K
Sbjct: 1001 LYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEADVILGIKVVK 1045

[Close]

BLAST of Cmc04g0096421 vs. NCBI nr
Match: KAG7571733.1 (Integrase catalytic core [Arabidopsis suecica])

HSP 1 Score: 331.6 bits (849), Expect = 5.5e-87
Identity = 151/225 (67.11%), Postives = 188/225 (83.56%), Query Frame = 0


Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQ 61
            WKEA+ +E DS++ NHTW++VDLP G K IRCKWI K+K K +GSI+++KARLV  G+ Q
Sbjct: 790  WKEAVNNEFDSIMTNHTWEIVDLPRGCKAIRCKWILKKKFKADGSIDKFKARLVAQGFAQ 849

Query: 62   KQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGFK 121
            KQG DYFDTY+PVTKI +I  L+A+A+ H L++H+MDVKTAFLNGDL EEIYM QPEGF 
Sbjct: 850  KQGVDYFDTYAPVTKIASIRMLLAVASAHKLVVHQMDVKTAFLNGDLHEEIYMMQPEGFI 909

Query: 122  ISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILIC 181
            I GQENKVCKL KSLYGLK APKQW+EKF+NTL++NGF  N  DTCV+SKV     ++IC
Sbjct: 910  IEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLENGFVSNEGDTCVFSKVHEHGYVIIC 969

Query: 182  LYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRK 227
            LYVDDMLI GT++E++ DTK+FLSS F+MKDLGEAD+ILG+++ K
Sbjct: 970  LYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEADVILGIKVVK 1014

[Close]

BLAST of Cmc04g0096421 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-58
Identity = 114/226 (50.44%), Postives = 161/226 (71.24%), Query Frame = 0


Query: 4    EAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQ 63
            +A++ E++SL  N T+ LV+LP G +P++CKW+FK K   +  + RYKARLVV G+ QK+
Sbjct: 828  KAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKK 887

Query: 64   GNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGFKIS 123
            G D+ + +SPV K+T+I  +++LAA   L + ++DVKTAFL+GDLEEEIYM QPEGF+++
Sbjct: 888  GIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVA 947

Query: 124  GQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVF-RADCILICL 183
            G+++ VCKL KSLYGLK AP+QWY KF++ +    +    SD CVY K F   + I++ L
Sbjct: 948  GKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLL 1007

Query: 184  YVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRKRK 229
            YVDDMLI G +  LI   K  LS  F+MKDLG A  ILG++I + +
Sbjct: 1008 YVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRER 1053

[Close]

BLAST of Cmc04g0096421 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.3e-46
Identity = 96/226 (42.48%), Postives = 139/226 (61.50%), Query Frame = 0


Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTKPNGSIERYKARLVVVGYT 61
            W+ A+ SE+++ + NHTWDLV  P  +  I  C+WIF +K   +GS+ RYKARLV  GY 
Sbjct: 968  WRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYN 1027

Query: 62   QKQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGF 121
            Q+ G DY +T+SPV K T+I  ++ +A   S  I ++DV  AFL G L +++YM+QP GF
Sbjct: 1028 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGF 1087

Query: 122  KISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILI 181
                + N VCKLRK+LYGLK AP+ WY +  N L+  GF  + SDT ++        + +
Sbjct: 1088 IDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYM 1147

Query: 182  CLYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRK 227
             +YVDD+LI G +  L+ +T   LS  F +KD  E    LG+  ++
Sbjct: 1148 LVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKR 1193

[Close]

BLAST of Cmc04g0096421 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.6e-44
Identity = 92/226 (40.71%), Postives = 138/226 (61.06%), Query Frame = 0


Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTKPNGSIERYKARLVVVGYT 61
            W++A+ SE+++ + NHTWDLV  P  +  I  C+WIF +K   +GS+ RYKARLV  GY 
Sbjct: 951  WRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYN 1010

Query: 62   QKQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGF 121
            Q+ G DY +T+SPV K T+I  ++ +A   S  I ++DV  AFL G L +E+YM+QP GF
Sbjct: 1011 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGF 1070

Query: 122  KISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILI 181
                + + VC+LRK++YGLK AP+ WY +    L+  GF  + SDT ++        I +
Sbjct: 1071 VDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYM 1130

Query: 182  CLYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRK 227
             +YVDD+LI G +  L+  T   LS  F +K+  +    LG+  ++
Sbjct: 1131 LVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKR 1176

[Close]

BLAST of Cmc04g0096421 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 173.3 bits (438), Expect = 3.3e-42
Identity = 92/229 (40.17%), Postives = 139/229 (60.70%), Query Frame = 0


Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQ 61
            W+EAI +EL++  +N+TW +   P     +  +W+F  K    G+  RYKARLV  G+TQ
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 62   KQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGFK 121
            K   DY +T++PV +I++   +++L   ++L +H+MDVKTAFLNG L+EEIYM  P+G  
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG-- 1025

Query: 122  ISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVY--SKVFRADCIL 181
            IS   + VCKL K++YGLK A + W+E F   L +  F  +S D C+Y   K    + I 
Sbjct: 1026 ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIY 1085

Query: 182  ICLYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRKRK 229
            + LYVDD++I   +M  + + K +L   F M DL E    +G+RI  ++
Sbjct: 1086 VLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQE 1132

[Close]

BLAST of Cmc04g0096421 vs. ExPASy Swiss-Prot
Match: O13535 (Transposon Ty1-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-H PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.6e-18
Identity = 75/243 (30.86%), Postives = 123/243 (50.62%), Query Frame = 0


Query: 4    EAIKSELDSLVMNHTWDLVDLPMGNKPIRCK------WIFKRKTKPNGSIERYKARLVVV 63
            +A   E++ L+M  TWD  D     K I  K      +IF RK   +G+   +KAR V  
Sbjct: 1290 QAYHKEVNQLLMMKTWD-TDRYYDRKEIDPKRVINSMFIFNRKR--DGT---HKARFVAR 1349

Query: 64   GYTQKQGNDYFDTYSPVTKITTIG-----ALIALAAIHSLLIHKMDVKTAFLNGDLEEEI 123
            G  Q     + DTY P  +  T+        ++LA  ++  I ++D+ +A+L  D++EE+
Sbjct: 1350 GDIQ-----HPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1409

Query: 124  YMTQPEGFKISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKV 183
            Y+  P      G  +K+ +L+KSLYGLK +   WYE   + LIK   +    +   +S V
Sbjct: 1410 YIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIK---QCGMEEVRGWSCV 1469

Query: 184  FRADCILICLYVDDMLIFGTNMELITDTKLFLSSHFEMK--DLGEAD-----IILGVRIR 229
            F+   + ICL+VDDM++F  ++         L   ++ K  +LGE+D      ILG+ I+
Sbjct: 1470 FKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK 1515

[Close]

BLAST of Cmc04g0096421 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 2.9e-118
Identity = 211/228 (92.54%), Postives = 218/228 (95.61%), Query Frame = 0


Query: 1    MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYT 60
            MWKEAIKSELDSL MNHTW+LVDLPMGNKPIRCKWIFKRKTKPNG IERYKARLVVVGYT
Sbjct: 848  MWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYT 907

Query: 61   QKQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGF 120
            QKQG DYFDTYSPVTKITTI ALIALAAIH+LLIH+MDVKTAFLNG+LEEEIYMTQPEGF
Sbjct: 908  QKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNGNLEEEIYMTQPEGF 967

Query: 121  KISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILI 180
            KISGQENKVCKLRKSLYGLK APKQWYEKFNNTLI NGFKINSSDTCVYSK+  ADCILI
Sbjct: 968  KISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLITNGFKINSSDTCVYSKMVGADCILI 1027

Query: 181  CLYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRKRK 229
            CLYVDDMLIFGTNMELITDTK FLSSHFEMKDLGEAD+ILGV+IRK K
Sbjct: 1028 CLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEADVILGVKIRKNK 1075

[Close]

BLAST of Cmc04g0096421 vs. ExPASy TrEMBL
Match: A0A5N6PGV2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_08640 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.6e-90
Identity = 159/226 (70.35%), Postives = 196/226 (86.73%), Query Frame = 0


Query: 1   MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYT 60
           +WKEAIKSE+DS++ NHTW+L DLP GNKPI  KWIFK+K +P+G++++YKARLV+ G+T
Sbjct: 199 LWKEAIKSEVDSILSNHTWELTDLPKGNKPIGSKWIFKKKLRPDGTVDKYKARLVIRGFT 258

Query: 61  QKQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGF 120
           QK G DYFDTYSPVTKITTI +LI++AAI+ LLIH+MDVKTAFLNGDL+EEIYM QPEGF
Sbjct: 259 QKHGLDYFDTYSPVTKITTIRSLISIAAINGLLIHQMDVKTAFLNGDLDEEIYMLQPEGF 318

Query: 121 KISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILI 180
            +SG E+KVCKLRKSLYGLK APK+WYEKF+ TL ++G+ +N+SD+CVYSK  +   +LI
Sbjct: 319 VVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQDGYIVNNSDSCVYSKRSKTGYVLI 378

Query: 181 CLYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRK 227
           CLYVDDMLIFG +M  I  TK FLSS FEMKDLGEAD+ILGV+I++
Sbjct: 379 CLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEADVILGVKIKR 424

[Close]

BLAST of Cmc04g0096421 vs. ExPASy TrEMBL
Match: A0A2N9EQT1 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4851 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 4.1e-88
Identity = 155/223 (69.51%), Postives = 190/223 (85.20%), Query Frame = 0


Query: 2   WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQ 61
           WK+AI SEL+S++ NHTW+LV+LP G K I  KW+FK+K K +GSIE++KARLV  GYTQ
Sbjct: 288 WKDAIHSELESIMGNHTWELVELPRGCKTIGSKWVFKKKLKADGSIEKFKARLVAKGYTQ 347

Query: 62  KQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGFK 121
           K+G DYFDTYSPVT++TTI  L+A+A+I+ L+IH+MDVKTAFLNGDL+EEIYM QPEGF 
Sbjct: 348 KEGIDYFDTYSPVTRLTTIRILVAIASIYKLIIHQMDVKTAFLNGDLDEEIYMDQPEGFV 407

Query: 122 ISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILIC 181
           + GQENKVCKLRKSLYGLK APKQW+EKF+ TL+ NGF +N SD CVYSK   A  ++IC
Sbjct: 408 VQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVSNGFAVNESDRCVYSKFSGASGVIIC 467

Query: 182 LYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRI 225
           LYVDDMLIFGT+M  + +TK FLSS+F+MKDLGEAD+ILG+RI
Sbjct: 468 LYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEADLILGIRI 510

[Close]

BLAST of Cmc04g0096421 vs. ExPASy TrEMBL
Match: A0A2N9H4B0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 4.1e-88
Identity = 155/223 (69.51%), Postives = 190/223 (85.20%), Query Frame = 0


Query: 2    WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQ 61
            WK+AI SEL+S++ NHTW+LV+LP G K I  KW+FK+K K +GSIE++KARLV  GYTQ
Sbjct: 798  WKDAIHSELESIMGNHTWELVELPRGCKTIGSKWVFKKKLKADGSIEKFKARLVAKGYTQ 857

Query: 62   KQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGFK 121
            K+G DYFDTYSPVT++TTI  L+A+A+I+ L+IH+MDVKTAFLNGDL+EEIYM QPEGF 
Sbjct: 858  KEGIDYFDTYSPVTRLTTIRILVAIASIYKLIIHQMDVKTAFLNGDLDEEIYMDQPEGFV 917

Query: 122  ISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILIC 181
            + GQENKVCKLRKSLYGLK APKQW+EKF+ TL+ NGF +N SD CVYSK   A  ++IC
Sbjct: 918  VQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVSNGFAVNESDRCVYSKFSGASGVIIC 977

Query: 182  LYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRI 225
            LYVDDMLIFGT+M  + +TK FLSS+F+MKDLGEAD+ILG+RI
Sbjct: 978  LYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEADLILGIRI 1020

[Close]

BLAST of Cmc04g0096421 vs. ExPASy TrEMBL
Match: A0A151TB60 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_018881 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 8.0e-84
Identity = 147/226 (65.04%), Postives = 188/226 (83.19%), Query Frame = 0


Query: 2   WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQ 61
           WKEAI+ E+DS+  N+TW LVDLP G KPI CKWIFKRK  P+GSIE+YKARLV  G+TQ
Sbjct: 506 WKEAIRIEIDSIKENNTWTLVDLPKGAKPIGCKWIFKRKYNPDGSIEKYKARLVAKGFTQ 565

Query: 62  KQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGFK 121
           KQ  D+FDT++PV +I++I  LIALA+IH L+IH+MDVKTAFLNG+LEEEIYMTQPEG +
Sbjct: 566 KQDIDFFDTFAPVARISSIRVLIALASIHRLVIHQMDVKTAFLNGELEEEIYMTQPEGCE 625

Query: 122 ISGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRADCILIC 181
           + GQENKVC+L KSLYGLK APKQW+EKF+  L+ +GF  +S+D CVY+K    DC++IC
Sbjct: 626 VPGQENKVCRLLKSLYGLKQAPKQWHEKFDQVLLNDGFSSSSADKCVYTKSMNDDCVIIC 685

Query: 182 LYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRKR 228
           LYVDDMLIFGT  +++  TK FL+S+F+MKD+GEA +ILGV++ ++
Sbjct: 686 LYVDDMLIFGTCDDIVFKTKSFLASNFDMKDMGEASVILGVKVVRK 731

[Close]

BLAST of Cmc04g0096421 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 202.6 bits (514), Expect = 3.6e-52
Identity = 97/230 (42.17%), Postives = 148/230 (64.35%), Query Frame = 0


Query: 1   MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYT 60
           +W  A+  E+ ++   HTW++  LP   KPI CKW++K K   +G+IERYKARLV  GYT
Sbjct: 97  VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYT 156

Query: 61  QKQGNDYFDTYSPVTKITTIGALIALAAIHSLLIHKMDVKTAFLNGDLEEEIYMTQPEGF 120
           Q++G D+ +T+SPV K+T++  ++A++AI++  +H++D+  AFLNGDL+EEIYM  P G+
Sbjct: 157 QQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216

Query: 121 KI----SGQENKVCKLRKSLYGLKHAPKQWYEKFNNTLIKNGFKINSSDTCVYSKVFRAD 180
                 S   N VC L+KS+YGLK A +QW+ KF+ TLI  GF  + SD   + K+    
Sbjct: 217 AARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATL 276

Query: 181 CILICLYVDDMLIFGTNMELITDTKLFLSSHFEMKDLGEADIILGVRIRK 227
            + + +YVDD++I   N   + + K  L S F+++DLG     LG+ I +
Sbjct: 277 FLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIAR 326

[Close]

BLAST of Cmc04g0096421 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-16
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 2   WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQ 61
           W +A++ ELD+L  N TW LV  P+    + CKW+FK K   +G+++R KARLV  G+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 62  KQGNDYFDTYSPVTKITTIGALIALA 88
           ++G  + +TYSPV +  TI  ++ +A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc04g0096421 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	6.0e-118	92.54	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAD6453934.1	5.3e-90	70.35	hypothetical protein E3N88_08640 [Mikania micrantha]	[more]
KAG7551885.1	5.5e-87	67.11	Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7592238.1	5.5e-87	67.11	Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7571733.1	5.5e-87	67.11	Integrase catalytic core [Arabidopsis suecica]	[more]

BLAST of Cmc04g0096421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.1e-58	50.44	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.3e-46	42.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.6e-44	40.71	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.3e-42	40.17	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
O13535	5.6e-18	30.86	Transposon Ty1-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0096421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	2.9e-118	92.54	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5N6PGV2	2.6e-90	70.35	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micran...	[more]
A0A2N9EQT1	4.1e-88	69.51	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9H4B0	4.1e-88	69.51	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1	[more]
A0A151TB60	8.0e-84	65.04	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]

BLAST of Cmc04g0096421 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.6e-52	42.17	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	5.4e-16	41.86	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 16..226 e-value: 1.2E-71 score: 241.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..225
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 16..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0096421.1	Cmc04g0096421.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding