Cmc04g0096351 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0096351
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr04: 10573216 .. 10573914 (-)
RNA-Seq Expression	Cmc04g0096351
Synteny	Cmc04g0096351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTACCATAACAGTTCCAGTCTTCCTTGATTTACAGATCATTAAAGAAGAGGAGGAGAAAGATATAAAGCTGATGAAAATTACAGTTGAAGTGAATGGCGATAGGGCTCAACAAGATAGCAAGTTCAAAATGTGTAATGGAATGTTGAAGTACAAAGATCGGTTGGTAATATCACAGTCGTCCAAATTGATACCACAGATATTACATAGCTATCATGACTCGGCAGTGGGAGGGCATCCAGGTTTTCTTCGTACTTATAAACGTATTTCGAGAGAATTATATTGGCAAGGCATGAAGGCTGTTATCAAGAAATATTGTGCCGAATGTTTGATCTGCCAACAAAACAAGACTTTATGCCTATCACCAGCAGGCCTATTACTTCCATTAAACATCCCTACACTAGTCTGGAGTGATATATCTATGGATTTCGTGGAGGGACTGCCTAAAGCAGCTGGTTTCGAAGTCATTTTTGTGGTAGTAGACCGGTTAAGTAAGTATGGTCATTTCTTGCCACTAAAACATCCTTATTCAGCAAAGACAATGGAAGAGTTATTTGTCAAGGAGGTGGTTCGGCTACATGGATTTCCTACTTCCATTGTATTGGATAGAGATCGGGTGTTCCTTAGTAATTTTTGGAAGGAAGTGTTCCGTTTGGCGGGTACGAAACTAAATAGAAGTTCAGCGTATCATCCGTAA

mRNA sequence

ATGTGTACCATAACAGTTCCAGTCTTCCTTGATTTACAGATCATTAAAGAAGAGGAGGAGAAAGATATAAAGCTGATGAAAATTACAGTTGAAGTGAATGGCGATAGGGCTCAACAAGATAGCAAGTTCAAAATGTGTAATGGAATGTTGAAGTACAAAGATCGGTTGGTAATATCACAGTCGTCCAAATTGATACCACAGATATTACATAGCTATCATGACTCGGCAGTGGGAGGGCATCCAGGTTTTCTTCGTACTTATAAACGTATTTCGAGAGAATTATATTGGCAAGGCATGAAGGCTGTTATCAAGAAATATTGTGCCGAATGTTTGATCTGCCAACAAAACAAGACTTTATGCCTATCACCAGCAGGCCTATTACTTCCATTAAACATCCCTACACTAGTCTGGAGTGATATATCTATGGATTTCGTGGAGGGACTGCCTAAAGCAGCTGGTTTCGAAGTCATTTTTGTGGTAGTAGACCGGTTAAGTAAGTATGGTCATTTCTTGCCACTAAAACATCCTTATTCAGCAAAGACAATGGAAGAGTTATTTGTCAAGGAGGTGGTTCGGCTACATGGATTTCCTACTTCCATTGTATTGGATAGAGATCGGGTGTTCCTTAGTAATTTTTGGAAGGAAGTGTTCCGTTTGGCGGGTACGAAACTAAATAGAAGTTCAGCGTATCATCCGTAA

Coding sequence (CDS)

ATGTGTACCATAACAGTTCCAGTCTTCCTTGATTTACAGATCATTAAAGAAGAGGAGGAGAAAGATATAAAGCTGATGAAAATTACAGTTGAAGTGAATGGCGATAGGGCTCAACAAGATAGCAAGTTCAAAATGTGTAATGGAATGTTGAAGTACAAAGATCGGTTGGTAATATCACAGTCGTCCAAATTGATACCACAGATATTACATAGCTATCATGACTCGGCAGTGGGAGGGCATCCAGGTTTTCTTCGTACTTATAAACGTATTTCGAGAGAATTATATTGGCAAGGCATGAAGGCTGTTATCAAGAAATATTGTGCCGAATGTTTGATCTGCCAACAAAACAAGACTTTATGCCTATCACCAGCAGGCCTATTACTTCCATTAAACATCCCTACACTAGTCTGGAGTGATATATCTATGGATTTCGTGGAGGGACTGCCTAAAGCAGCTGGTTTCGAAGTCATTTTTGTGGTAGTAGACCGGTTAAGTAAGTATGGTCATTTCTTGCCACTAAAACATCCTTATTCAGCAAAGACAATGGAAGAGTTATTTGTCAAGGAGGTGGTTCGGCTACATGGATTTCCTACTTCCATTGTATTGGATAGAGATCGGGTGTTCCTTAGTAATTTTTGGAAGGAAGTGTTCCGTTTGGCGGGTACGAAACTAAATAGAAGTTCAGCGTATCATCCGTAA

Protein sequence

MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP

Homology

[Close]

BLAST of Cmc04g0096351 vs. NCBI nr
Match: KAA0057179.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18781.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 429.1 bits (1102), Expect = 2.4e-116
Identity = 210/232 (90.52%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1    MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQ 60
            MCTITVPV LDLQ IKEE EKD KLMKI  E+NG+ A QDSKFKM NGMLKYKDRLVISQ
Sbjct: 928  MCTITVPVSLDLQTIKEEVEKDTKLMKIIAEMNGNMAPQDSKFKMHNGMLKYKDRLVISQ 987

Query: 61   SSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLC 120
            +SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMKAV+KKYCAECLICQQNKTLC
Sbjct: 988  TSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCAECLICQQNKTLC 1047

Query: 121  LSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK 180
            LSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK
Sbjct: 1048 LSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK 1107

Query: 181  TMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            T+ ELFVKEVVRLHGFP SIV DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Sbjct: 1108 TVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSSAYHP 1159

[Close]

BLAST of Cmc04g0096351 vs. NCBI nr
Match: KAA0062868.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 4.1e-116
Identity = 209/232 (90.09%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1    MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQ 60
            MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+ A QDSKFK+ NGMLKYKDRLVISQ
Sbjct: 1049 MCTITVPVSLDLQIIKEEVEKDTKLMKIIAEMNGNMALQDSKFKIHNGMLKYKDRLVISQ 1108

Query: 61   SSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLC 120
            +SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMKAV+KKYCAECLICQQNKTLC
Sbjct: 1109 TSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCAECLICQQNKTLC 1168

Query: 121  LSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK 180
            LSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAK
Sbjct: 1169 LSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFIPLKHPYSAK 1228

Query: 181  TMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            T+ ELFVKEVVRLHGFP SIV DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Sbjct: 1229 TVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSSAYHP 1280

[Close]

BLAST of Cmc04g0096351 vs. NCBI nr
Match: TYJ96875.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 426.8 bits (1096), Expect = 1.2e-115
Identity = 208/232 (89.66%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1    MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQ 60
            MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+   QDSKFK+ NGMLKYKDRLVISQ
Sbjct: 1049 MCTITVPVSLDLQIIKEEVEKDTKLMKIIAEMNGNMTLQDSKFKIHNGMLKYKDRLVISQ 1108

Query: 61   SSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLC 120
            +SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMKAV+KKYCAECLICQQNKTLC
Sbjct: 1109 TSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCAECLICQQNKTLC 1168

Query: 121  LSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK 180
            LSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAK
Sbjct: 1169 LSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFIPLKHPYSAK 1228

Query: 181  TMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            T+ ELFVKEVVRLHGFP SIV DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Sbjct: 1229 TVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSSAYHP 1280

[Close]

BLAST of Cmc04g0096351 vs. NCBI nr
Match: KAA0068193.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 426.8 bits (1096), Expect = 1.2e-115
Identity = 208/232 (89.66%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1    MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQ 60
            MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+   QDSKFK+ NGMLKYKDRLVISQ
Sbjct: 1049 MCTITVPVSLDLQIIKEEVEKDTKLMKIIAEMNGNMTLQDSKFKIHNGMLKYKDRLVISQ 1108

Query: 61   SSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLC 120
            +SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMKAV+KKYCAECLICQQNKTLC
Sbjct: 1109 TSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCAECLICQQNKTLC 1168

Query: 121  LSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK 180
            LSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAK
Sbjct: 1169 LSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFIPLKHPYSAK 1228

Query: 181  TMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            T+ ELFVKEVVRLHGFP SIV DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Sbjct: 1229 TVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSSAYHP 1280

[Close]

BLAST of Cmc04g0096351 vs. NCBI nr
Match: TYK21518.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 417.9 bits (1073), Expect = 5.6e-113
Identity = 202/230 (87.83%), Postives = 215/230 (93.48%), Query Frame = 0


Query: 3    TITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSS 62
            T+T PVFLDLQIIKEE EKDI+LMKI  E+N +  QQDSKF +CNGMLKYKDRLVISQSS
Sbjct: 802  TVTAPVFLDLQIIKEEVEKDIRLMKIIAELNSNDNQQDSKFNICNGMLKYKDRLVISQSS 861

Query: 63   KLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLCLS 122
            KLIPQ+LHSYHDSAVGGH GFLRTYKRI+ ELYW+GMK VIKKYCAECLICQ+NKTLCLS
Sbjct: 862  KLIPQVLHSYHDSAVGGHSGFLRTYKRIAGELYWKGMKTVIKKYCAECLICQRNKTLCLS 921

Query: 123  PAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTM 182
             AGLLLPLNIPTL+WSDISMDFVEGLPKAAGFEVIFVVVDRLSKY HFLPLKHPYSAKT+
Sbjct: 922  QAGLLLPLNIPTLIWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYAHFLPLKHPYSAKTV 981

Query: 183  EELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
             +LFVKEVVRLHGFPTSIV DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Sbjct: 982  ADLFVKEVVRLHGFPTSIVSDRDRVFLSNFWKEMFRLAGTKLNRSSAYHP 1031

[Close]

BLAST of Cmc04g0096351 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-24
Identity = 63/216 (29.17%), Postives = 105/216 (48.61%), Query Frame = 0


Query: 18   EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSA 77
            E   D KL+ +   +N +  + +   ++ +G+L   KD++++   ++L   I+  YH+  
Sbjct: 867  EYTNDTKLLNL---LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEG 926

Query: 78   VGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLV 137
               HPG       I R   W+G++  I++Y   C  CQ NK+    P G L P+      
Sbjct: 927  KLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERP 986

Query: 138  WSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGF 197
            W  +SMDF+  LP+++G+  +FVVVDR SK    +P     +A+    +F + V+   G 
Sbjct: 987  WESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN 1046

Query: 198  PTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            P  I+ D D +F S  WK+        +  S  Y P
Sbjct: 1047 PKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRP 1079

[Close]

BLAST of Cmc04g0096351 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-24
Identity = 63/216 (29.17%), Postives = 105/216 (48.61%), Query Frame = 0


Query: 18   EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSA 77
            E   D KL+ +   +N +  + +   ++ +G+L   KD++++   ++L   I+  YH+  
Sbjct: 867  EYTNDTKLLNL---LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEG 926

Query: 78   VGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLV 137
               HPG       I R   W+G++  I++Y   C  CQ NK+    P G L P+      
Sbjct: 927  KLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERP 986

Query: 138  WSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGF 197
            W  +SMDF+  LP+++G+  +FVVVDR SK    +P     +A+    +F + V+   G 
Sbjct: 987  WESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN 1046

Query: 198  PTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            P  I+ D D +F S  WK+        +  S  Y P
Sbjct: 1047 PKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRP 1079

[Close]

BLAST of Cmc04g0096351 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-24
Identity = 63/216 (29.17%), Postives = 105/216 (48.61%), Query Frame = 0


Query: 18   EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSA 77
            E   D KL+ +   +N +  + +   ++ +G+L   KD++++   ++L   I+  YH+  
Sbjct: 867  EYTNDTKLLNL---LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEG 926

Query: 78   VGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLV 137
               HPG       I R   W+G++  I++Y   C  CQ NK+    P G L P+      
Sbjct: 927  KLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERP 986

Query: 138  WSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGF 197
            W  +SMDF+  LP+++G+  +FVVVDR SK    +P     +A+    +F + V+   G 
Sbjct: 987  WESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN 1046

Query: 198  PTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            P  I+ D D +F S  WK+        +  S  Y P
Sbjct: 1047 PKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRP 1079

[Close]

BLAST of Cmc04g0096351 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-24
Identity = 63/216 (29.17%), Postives = 105/216 (48.61%), Query Frame = 0


Query: 18   EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSA 77
            E   D KL+ +   +N +  + +   ++ +G+L   KD++++   ++L   I+  YH+  
Sbjct: 867  EYTNDTKLLNL---LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEG 926

Query: 78   VGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLV 137
               HPG       I R   W+G++  I++Y   C  CQ NK+    P G L P+      
Sbjct: 927  KLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERP 986

Query: 138  WSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGF 197
            W  +SMDF+  LP+++G+  +FVVVDR SK    +P     +A+    +F + V+   G 
Sbjct: 987  WESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN 1046

Query: 198  PTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            P  I+ D D +F S  WK+        +  S  Y P
Sbjct: 1047 PKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRP 1079

[Close]

BLAST of Cmc04g0096351 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.0e-24
Identity = 63/216 (29.17%), Postives = 105/216 (48.61%), Query Frame = 0


Query: 18   EEEKDIKLMKITVEVNGDRAQQDSKFKMCNGML-KYKDRLVISQSSKLIPQILHSYHDSA 77
            E   D KL+ +   +N +  + +   ++ +G+L   KD++++   ++L   I+  YH+  
Sbjct: 867  EYTNDTKLLNL---LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEG 926

Query: 78   VGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLCLSPAGLLLPLNIPTLV 137
               HPG       I R   W+G++  I++Y   C  CQ NK+    P G L P+      
Sbjct: 927  KLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERP 986

Query: 138  WSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTMEELFVKEVVRLHGF 197
            W  +SMDF+  LP+++G+  +FVVVDR SK    +P     +A+    +F + V+   G 
Sbjct: 987  WESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN 1046

Query: 198  PTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            P  I+ D D +F S  WK+        +  S  Y P
Sbjct: 1047 PKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRP 1079

[Close]

BLAST of Cmc04g0096351 vs. ExPASy TrEMBL
Match: A0A5D3D5G0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00880 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.2e-116
Identity = 210/232 (90.52%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1    MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQ 60
            MCTITVPV LDLQ IKEE EKD KLMKI  E+NG+ A QDSKFKM NGMLKYKDRLVISQ
Sbjct: 928  MCTITVPVSLDLQTIKEEVEKDTKLMKIIAEMNGNMAPQDSKFKMHNGMLKYKDRLVISQ 987

Query: 61   SSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLC 120
            +SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMKAV+KKYCAECLICQQNKTLC
Sbjct: 988  TSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCAECLICQQNKTLC 1047

Query: 121  LSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK 180
            LSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK
Sbjct: 1048 LSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK 1107

Query: 181  TMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            T+ ELFVKEVVRLHGFP SIV DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Sbjct: 1108 TVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSSAYHP 1159

[Close]

BLAST of Cmc04g0096351 vs. ExPASy TrEMBL
Match: A0A5A7V5H5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2406G00250 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 209/232 (90.09%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1    MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQ 60
            MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+ A QDSKFK+ NGMLKYKDRLVISQ
Sbjct: 1049 MCTITVPVSLDLQIIKEEVEKDTKLMKIIAEMNGNMALQDSKFKIHNGMLKYKDRLVISQ 1108

Query: 61   SSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLC 120
            +SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMKAV+KKYCAECLICQQNKTLC
Sbjct: 1109 TSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCAECLICQQNKTLC 1168

Query: 121  LSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK 180
            LSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAK
Sbjct: 1169 LSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFIPLKHPYSAK 1228

Query: 181  TMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            T+ ELFVKEVVRLHGFP SIV DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Sbjct: 1229 TVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSSAYHP 1280

[Close]

BLAST of Cmc04g0096351 vs. ExPASy TrEMBL
Match: A0A5D3BEL2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00340 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 5.8e-116
Identity = 208/232 (89.66%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1    MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQ 60
            MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+   QDSKFK+ NGMLKYKDRLVISQ
Sbjct: 1049 MCTITVPVSLDLQIIKEEVEKDTKLMKIIAEMNGNMTLQDSKFKIHNGMLKYKDRLVISQ 1108

Query: 61   SSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLC 120
            +SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMKAV+KKYCAECLICQQNKTLC
Sbjct: 1109 TSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCAECLICQQNKTLC 1168

Query: 121  LSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK 180
            LSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAK
Sbjct: 1169 LSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFIPLKHPYSAK 1228

Query: 181  TMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            T+ ELFVKEVVRLHGFP SIV DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Sbjct: 1229 TVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSSAYHP 1280

[Close]

BLAST of Cmc04g0096351 vs. ExPASy TrEMBL
Match: A0A5A7VJA0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001740 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 5.8e-116
Identity = 208/232 (89.66%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1    MCTITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQ 60
            MCTITVPV LDLQIIKEE EKD KLMKI  E+NG+   QDSKFK+ NGMLKYKDRLVISQ
Sbjct: 1049 MCTITVPVSLDLQIIKEEVEKDTKLMKIIAEMNGNMTLQDSKFKIHNGMLKYKDRLVISQ 1108

Query: 61   SSKLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLC 120
            +SKLIPQILHSYHDSAVGGH GFLRTYKRIS ELYWQGMKAV+KKYCAECLICQQNKTLC
Sbjct: 1109 TSKLIPQILHSYHDSAVGGHSGFLRTYKRISGELYWQGMKAVVKKYCAECLICQQNKTLC 1168

Query: 121  LSPAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAK 180
            LSPAGLLLPLNIPTL+W+DISMDFVEGLPKAAGFEVIFVVVDRLSKYGHF+PLKHPYSAK
Sbjct: 1169 LSPAGLLLPLNIPTLIWNDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFIPLKHPYSAK 1228

Query: 181  TMEELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
            T+ ELFVKEVVRLHGFP SIV DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Sbjct: 1229 TVAELFVKEVVRLHGFPASIVSDRDRVFLSNFWKEMFRLAGTKLNRSSAYHP 1280

[Close]

BLAST of Cmc04g0096351 vs. ExPASy TrEMBL
Match: A0A5D3DDC2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00130 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.7e-113
Identity = 202/230 (87.83%), Postives = 215/230 (93.48%), Query Frame = 0


Query: 3    TITVPVFLDLQIIKEEEEKDIKLMKITVEVNGDRAQQDSKFKMCNGMLKYKDRLVISQSS 62
            T+T PVFLDLQIIKEE EKDI+LMKI  E+N +  QQDSKF +CNGMLKYKDRLVISQSS
Sbjct: 802  TVTAPVFLDLQIIKEEVEKDIRLMKIIAELNSNDNQQDSKFNICNGMLKYKDRLVISQSS 861

Query: 63   KLIPQILHSYHDSAVGGHPGFLRTYKRISRELYWQGMKAVIKKYCAECLICQQNKTLCLS 122
            KLIPQ+LHSYHDSAVGGH GFLRTYKRI+ ELYW+GMK VIKKYCAECLICQ+NKTLCLS
Sbjct: 862  KLIPQVLHSYHDSAVGGHSGFLRTYKRIAGELYWKGMKTVIKKYCAECLICQRNKTLCLS 921

Query: 123  PAGLLLPLNIPTLVWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYGHFLPLKHPYSAKTM 182
             AGLLLPLNIPTL+WSDISMDFVEGLPKAAGFEVIFVVVDRLSKY HFLPLKHPYSAKT+
Sbjct: 922  QAGLLLPLNIPTLIWSDISMDFVEGLPKAAGFEVIFVVVDRLSKYAHFLPLKHPYSAKTV 981

Query: 183  EELFVKEVVRLHGFPTSIVLDRDRVFLSNFWKEVFRLAGTKLNRSSAYHP 233
             +LFVKEVVRLHGFPTSIV DRDRVFLSNFWKE+FRLAGTKLNRSSAYHP
Sbjct: 982  ADLFVKEVVRLHGFPTSIVSDRDRVFLSNFWKEMFRLAGTKLNRSSAYHP 1031

The following BLAST results are available for this feature:

BLAST of Cmc04g0096351 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057179.1	2.4e-116	90.52	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18781.1 Ty3/gyp...	[more]
KAA0062868.1	4.1e-116	90.09	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ96875.1	1.2e-115	89.66	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19540.1 Ty3/gyp...	[more]
KAA0068193.1	1.2e-115	89.66	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK21518.1	5.6e-113	87.83	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0096351 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	1.0e-24	29.17	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.0e-24	29.17	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.0e-24	29.17	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.0e-24	29.17	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	1.0e-24	29.17	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc04g0096351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5G0	1.2e-116	90.52	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V5H5	2.0e-116	90.09	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BEL2	5.8e-116	89.66	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VJA0	5.8e-116	89.66	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DDC2	2.7e-113	87.83	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc04g0096351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 62..118 e-value: 2.7E-20 score: 72.2
None	No IPR available	GENE3D	1.10.340.70		coord: 27..117 e-value: 3.1E-18 score: 67.8
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 53..232
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 127..232 e-value: 5.2E-22 score: 80.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 129..232 score: 12.70887
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 130..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0096351.1	Cmc04g0096351.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding