Cmc04g0095951 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0095951
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr04: 9809413 .. 9809931 (-)
RNA-Seq Expression	Cmc04g0095951
Synteny	Cmc04g0095951

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCGAATGCTTCTAGTTCCGCCTACAAGATTGAATCTGTTAATTTATGGCATGGTAGACTAGGACATGTGAATTTTGCATCAATTAGGAAGCTTAAAGACTTGAAACTTATTAATACTTCTGAGTCGCATAAAACTGGTAAATGCCCTATTTGTGTAGAAAGTAAGTTTTATAAGAAACCTTTCAAACTAGTTGAATCTAGAAGTACTGATCTGTTAGAATTAATTCACTCAGATCTAGCCAATTTTAAAAACATTACTAGTAGAGGTGGTAAAAACTACTATGTATCTTTTGTTGATGATTACTCTAGATTTACTAAGATATACTTAATAAAAACAAAAGATGAAGCTGGTAGTATGTTTTTAAAATTTAGAGCAGAATTTGAAAATCAATTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGATGTGGTGAGTATTCTGATAAAACTTTTAAGGACTTTTGTGAGTCAAACGGTATTATTCATGAATTTACTGCTCCTTACTCACCATAA

mRNA sequence

ATGAATGCGAATGCTTCTAGTTCCGCCTACAAGATTGAATCTGTTAATTTATGGCATGGTAGACTAGGACATGTGAATTTTGCATCAATTAGGAAGCTTAAAGACTTGAAACTTATTAATACTTCTGAGTCGCATAAAACTGGTAAATGCCCTATTTGTGTAGAAAGTAAGTTTTATAAGAAACCTTTCAAACTAGTTGAATCTAGAAGTACTGATCTGTTAGAATTAATTCACTCAGATCTAGCCAATTTTAAAAACATTACTAGTAGAGGTGGTAAAAACTACTATGTATCTTTTGTTGATGATTACTCTAGATTTACTAAGATATACTTAATAAAAACAAAAGATGAAGCTGGTAGTATGTTTTTAAAATTTAGAGCAGAATTTGAAAATCAATTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGATGTGGTGAGTATTCTGATAAAACTTTTAAGGACTTTTGTGAGTCAAACGGTATTATTCATGAATTTACTGCTCCTTACTCACCATAA

Coding sequence (CDS)

ATGAATGCGAATGCTTCTAGTTCCGCCTACAAGATTGAATCTGTTAATTTATGGCATGGTAGACTAGGACATGTGAATTTTGCATCAATTAGGAAGCTTAAAGACTTGAAACTTATTAATACTTCTGAGTCGCATAAAACTGGTAAATGCCCTATTTGTGTAGAAAGTAAGTTTTATAAGAAACCTTTCAAACTAGTTGAATCTAGAAGTACTGATCTGTTAGAATTAATTCACTCAGATCTAGCCAATTTTAAAAACATTACTAGTAGAGGTGGTAAAAACTACTATGTATCTTTTGTTGATGATTACTCTAGATTTACTAAGATATACTTAATAAAAACAAAAGATGAAGCTGGTAGTATGTTTTTAAAATTTAGAGCAGAATTTGAAAATCAATTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGATGTGGTGAGTATTCTGATAAAACTTTTAAGGACTTTTGTGAGTCAAACGGTATTATTCATGAATTTACTGCTCCTTACTCACCATAA

Protein sequence

MNANASSSAYKIESVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYKKPFKLVESRSTDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGSMFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYSP

Homology

[Close]

BLAST of Cmc04g0095951 vs. NCBI nr
Match: KAA0060696.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 316.2 bits (809), Expect = 1.7e-82
Identity = 154/171 (90.06%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   MNANASSSAYKIESVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYK 60
           MNANASSSAY IESVNLWHGRLGHVNFAS +KLKDL+LINTSESH+T KCPICVESKF+K
Sbjct: 336 MNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTSESHETDKCPICVESKFHK 395

Query: 61  KPFKLVESRSTDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 120
           KPFK VE+R+T+LLELIHSDLA+FKN TSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS
Sbjct: 396 KPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 455

Query: 121 MFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYS 172
           MFLKF+AE ENQLGKKIKRLRSDRCGEYSDKT KDFCESN IIHEFTAPYS
Sbjct: 456 MFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDIIHEFTAPYS 506

[Close]

BLAST of Cmc04g0095951 vs. NCBI nr
Match: TYK03297.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 316.2 bits (809), Expect = 1.7e-82
Identity = 154/171 (90.06%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   MNANASSSAYKIESVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYK 60
           MNANASSSAY IESVNLWHGRLGHVNFAS +KLKDL+LINTSESH+T KCPICVESKF+K
Sbjct: 358 MNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTSESHETDKCPICVESKFHK 417

Query: 61  KPFKLVESRSTDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 120
           KPFK VE+R+T+LLELIHSDLA+FKN TSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS
Sbjct: 418 KPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 477

Query: 121 MFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYS 172
           MFLKF+AE ENQLGKKIKRLRSDRCGEYSDKT KDFCESN IIHEFTAPYS
Sbjct: 478 MFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDIIHEFTAPYS 528

[Close]

BLAST of Cmc04g0095951 vs. NCBI nr
Match: KAA0042230.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 315.1 bits (806), Expect = 3.8e-82
Identity = 153/172 (88.95%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   MNANASSSAYKIESVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYK 60
           MNANASSSAY IESVNLWHGRLGHVNF S RKLKDL+LINT++SH+T KCPICVESKF+K
Sbjct: 323 MNANASSSAYVIESVNLWHGRLGHVNFVSTRKLKDLRLINTTKSHETDKCPICVESKFHK 382

Query: 61  KPFKLVESRSTDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 120
           KPFK VESR+TDLLELIHSDLA+F+  TSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS
Sbjct: 383 KPFKPVESRTTDLLELIHSDLADFRTTTSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 442

Query: 121 MFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYSP 173
           MFLKF+AE ENQLGKKIKRLRSDR GEYSDKT KDFCESNGIIHEFTAPYSP
Sbjct: 443 MFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKDFCESNGIIHEFTAPYSP 494

[Close]

BLAST of Cmc04g0095951 vs. NCBI nr
Match: KAA0045258.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19282.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 153/172 (88.95%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MNANASSSAYKIESVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYK 60
           MNANASS  Y IESVNLWHGRLGHVNFASIRKLKDL+LINTSESH+TGKCPICVESKF+K
Sbjct: 300 MNANASSYTYVIESVNLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHK 359

Query: 61  KPFKLVESRSTDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 120
           KPFKLV+SR+ DLLELIHSDLA+F+  TSR GKNYYVSFVDDYSRFTKIYLIKTKDEAGS
Sbjct: 360 KPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 419

Query: 121 MFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYSP 173
           MFLKF AE ENQLGKKIKRLR DR GEYSDKT KDFCESNGIIHEFTAPYSP
Sbjct: 420 MFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSP 471

[Close]

BLAST of Cmc04g0095951 vs. NCBI nr
Match: TYK29957.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 311.6 bits (797), Expect = 4.2e-81
Identity = 151/172 (87.79%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MNANASSSAYKIESVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYK 60
           MN NASSS Y IE VNLWHGRLGHVNFASIRKLKDL+LINTS+SH+TGKCPICVESKF+K
Sbjct: 140 MNVNASSSTYVIEFVNLWHGRLGHVNFASIRKLKDLRLINTSDSHETGKCPICVESKFHK 199

Query: 61  KPFKLVESRSTDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 120
           KPFK VESR+TDLLELIHSDLA+FK  TSRGGKNYYVSFVDDYSRFTKIYLIK KDEAGS
Sbjct: 200 KPFKPVESRTTDLLELIHSDLADFKTTTSRGGKNYYVSFVDDYSRFTKIYLIKIKDEAGS 259

Query: 121 MFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYSP 173
           MFLKF+AE ENQLGKKIKRLRSDR GEYSDKT KDFCESNG+ HEFTAPY P
Sbjct: 260 MFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKDFCESNGVTHEFTAPYLP 311

[Close]

BLAST of Cmc04g0095951 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-30
Identity = 62/159 (38.99%), Postives = 99/159 (62.26%), Query Frame = 0


Query: 14  SVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYKKPFKLVESRSTDL 73
           SV+LWH R+GH++   ++ L    LI+ ++      C  C+  K ++  F+    R  ++
Sbjct: 421 SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNI 480

Query: 74  LELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGSMFLKFRAEFENQL 133
           L+L++SD+     I S GG  Y+V+F+DD SR   +Y++KTKD+   +F KF A  E + 
Sbjct: 481 LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERET 540

Query: 134 GKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYSP 173
           G+K+KRLRSD  GEY+ + F+++C S+GI HE T P +P
Sbjct: 541 GRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTP 579

[Close]

BLAST of Cmc04g0095951 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.4e-16
Identity = 52/156 (33.33%), Postives = 81/156 (51.92%), Query Frame = 0


Query: 18  WHGRLGHVNFASIRK-LKDLKLINTSESHKTGKCPICVESKFYKKPFKLVESRSTDLLEL 77
           WH RLGH + A +   + +  L   + SHK   C  C  +K +K PF      S+  LE 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 78  IHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGSMFLKFRAEFENQLGKK 137
           I+SD+ +   I S     YYV FVD ++R+T +Y +K K +    F+ F++  EN+   +
Sbjct: 506 IYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTR 565

Query: 138 IKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYSP 173
           I  L SD  GE+     +D+   +GI H  + P++P
Sbjct: 566 IGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTP 598

[Close]

BLAST of Cmc04g0095951 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 53/175 (30.29%), Postives = 82/175 (46.86%), Query Frame = 0


Query: 6   SSSAYKIESVNLWHGRLGHVNFASIRKLK------DLKLINTSESHKTGKCPICVESKFY 65
           S +A    +  LWH R GH++   + ++K      D  L+N  E      C  C+  K  
Sbjct: 406 SINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLEL-SCEICEPCLNGKQA 465

Query: 66  KKPFKLVESRS--TDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDE 125
           + PFK ++ ++     L ++HSD+       +   KNY+V FVD ++ +   YLIK K +
Sbjct: 466 RLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSD 525

Query: 126 AGSMFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYSP 173
             SMF  F A+ E     K+  L  D   EY     + FC   GI +  T P++P
Sbjct: 526 VFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTP 579

[Close]

BLAST of Cmc04g0095951 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-14
Identity = 50/156 (32.05%), Postives = 77/156 (49.36%), Query Frame = 0


Query: 18  WHGRLGHVNFASIRK-LKDLKLINTSESHKTGKCPICVESKFYKKPFKLVESRSTDLLEL 77
           WH RLGH   + +   + +  L   + SHK   C  C+ +K  K PF      ST  LE 
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 526

Query: 78  IHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGSMFLKFRAEFENQLGKK 137
           I+SD+ +   I S     YYV FVD ++R+T +Y +K K +    F+ F+   EN+   +
Sbjct: 527 IYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTR 586

Query: 138 IKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYSP 173
           I    SD  GE+      ++   +GI H  + P++P
Sbjct: 587 IGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTP 619

[Close]

BLAST of Cmc04g0095951 vs. ExPASy TrEMBL
Match: A0A5D3BV07 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001350 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.2e-83
Identity = 154/171 (90.06%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   MNANASSSAYKIESVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYK 60
           MNANASSSAY IESVNLWHGRLGHVNFAS +KLKDL+LINTSESH+T KCPICVESKF+K
Sbjct: 358 MNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTSESHETDKCPICVESKFHK 417

Query: 61  KPFKLVESRSTDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 120
           KPFK VE+R+T+LLELIHSDLA+FKN TSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS
Sbjct: 418 KPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 477

Query: 121 MFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYS 172
           MFLKF+AE ENQLGKKIKRLRSDRCGEYSDKT KDFCESN IIHEFTAPYS
Sbjct: 478 MFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDIIHEFTAPYS 528

[Close]

BLAST of Cmc04g0095951 vs. ExPASy TrEMBL
Match: A0A5A7V2H1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G006010 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.2e-83
Identity = 154/171 (90.06%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   MNANASSSAYKIESVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYK 60
           MNANASSSAY IESVNLWHGRLGHVNFAS +KLKDL+LINTSESH+T KCPICVESKF+K
Sbjct: 336 MNANASSSAYVIESVNLWHGRLGHVNFASNQKLKDLRLINTSESHETDKCPICVESKFHK 395

Query: 61  KPFKLVESRSTDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 120
           KPFK VE+R+T+LLELIHSDLA+FKN TSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS
Sbjct: 396 KPFKPVETRTTNLLELIHSDLADFKNTTSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 455

Query: 121 MFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYS 172
           MFLKF+AE ENQLGKKIKRLRSDRCGEYSDKT KDFCESN IIHEFTAPYS
Sbjct: 456 MFLKFKAESENQLGKKIKRLRSDRCGEYSDKTLKDFCESNDIIHEFTAPYS 506

[Close]

BLAST of Cmc04g0095951 vs. ExPASy TrEMBL
Match: A0A5A7TFW9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00040 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.8e-82
Identity = 153/172 (88.95%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   MNANASSSAYKIESVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYK 60
           MNANASSSAY IESVNLWHGRLGHVNF S RKLKDL+LINT++SH+T KCPICVESKF+K
Sbjct: 323 MNANASSSAYVIESVNLWHGRLGHVNFVSTRKLKDLRLINTTKSHETDKCPICVESKFHK 382

Query: 61  KPFKLVESRSTDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 120
           KPFK VESR+TDLLELIHSDLA+F+  TSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS
Sbjct: 383 KPFKPVESRTTDLLELIHSDLADFRTTTSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 442

Query: 121 MFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYSP 173
           MFLKF+AE ENQLGKKIKRLRSDR GEYSDKT KDFCESNGIIHEFTAPYSP
Sbjct: 443 MFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKDFCESNGIIHEFTAPYSP 494

[Close]

BLAST of Cmc04g0095951 vs. ExPASy TrEMBL
Match: A0A5A7TQW7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00950 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.3e-82
Identity = 153/172 (88.95%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MNANASSSAYKIESVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYK 60
           MNANASS  Y IESVNLWHGRLGHVNFASIRKLKDL+LINTSESH+TGKCPICVESKF+K
Sbjct: 300 MNANASSYTYVIESVNLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHK 359

Query: 61  KPFKLVESRSTDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 120
           KPFKLV+SR+ DLLELIHSDLA+F+  TSR GKNYYVSFVDDYSRFTKIYLIKTKDEAGS
Sbjct: 360 KPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 419

Query: 121 MFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYSP 173
           MFLKF AE ENQLGKKIKRLR DR GEYSDKT KDFCESNGIIHEFTAPYSP
Sbjct: 420 MFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSP 471

[Close]

BLAST of Cmc04g0095951 vs. ExPASy TrEMBL
Match: A0A5A7UCV4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold778G00080 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81
Identity = 151/172 (87.79%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MNANASSSAYKIESVNLWHGRLGHVNFASIRKLKDLKLINTSESHKTGKCPICVESKFYK 60
           MN NASSS Y IE VNLWHGRLGHVNFASIRKLKDL+LINTS+SH+TGKCPICVESKF+K
Sbjct: 155 MNVNASSSTYVIEFVNLWHGRLGHVNFASIRKLKDLRLINTSDSHETGKCPICVESKFHK 214

Query: 61  KPFKLVESRSTDLLELIHSDLANFKNITSRGGKNYYVSFVDDYSRFTKIYLIKTKDEAGS 120
           KPFK VESR+TDLLELIHSDLA+FK  TSRGGKNYYVSFVDDYSRFTKIYLIK KDEAGS
Sbjct: 215 KPFKPVESRTTDLLELIHSDLADFKTTTSRGGKNYYVSFVDDYSRFTKIYLIKIKDEAGS 274

Query: 121 MFLKFRAEFENQLGKKIKRLRSDRCGEYSDKTFKDFCESNGIIHEFTAPYSP 173
           MFLKF+AE ENQLGKKIKRLRSDR GEYSDKT KDFCESNG+ HEFTAPY P
Sbjct: 275 MFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKDFCESNGVTHEFTAPYLP 326

The following BLAST results are available for this feature:

BLAST of Cmc04g0095951 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060696.1	1.7e-82	90.06	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK03297.1	1.7e-82	90.06	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042230.1	3.8e-82	88.95	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0045258.1	1.1e-81	88.95	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19282.1 ty1-cop...	[more]
TYK29957.1	4.2e-81	87.79	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0095951 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.1e-30	38.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	6.4e-16	33.33	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.4e-15	30.29	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	4.6e-14	32.05	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc04g0095951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BV07	8.2e-83	90.06	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V2H1	8.2e-83	90.06	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TFW9	1.8e-82	88.95	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TQW7	5.3e-82	88.95	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UCV4	2.0e-81	87.79	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc04g0095951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 4..57 e-value: 9.1E-12 score: 44.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 65..172 e-value: 1.4E-20 score: 75.5
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 75..172 e-value: 1.8E-15 score: 57.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 58..172 score: 14.714721
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 10..169
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 10..169
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 70..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0095951.1	Cmc04g0095951.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding