Cmc04g0095651 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0095651
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	NUC173 domain-containing protein
Location	CMiso1.1chr04: 9275469 .. 9279104 (+)
RNA-Seq Expression	Cmc04g0095651
Synteny	Cmc04g0095651

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTTTCTCAATATTTTCCTTCTTCCCCGATTTTCTTCTTCTAGATTTTCTCCAAACTCACGTAGCTCCAGTCATTCATTCGTGCACTACCACCGAAGCTTCAATCAGCCGTTTGGACGCCACATTCGAGCTTAAGTCCATTCTGTTCGCTCCAAAGGTGCGTCAATCGTGCGCTCCAATCGTCTGCTTCACGTTATCGTTTAGAGATCGGAGACACATCAATCTTTTTTTCTCTTTTTTTCTCTTTTTATCTCTTTTTATCTCACTTTTTGCTGCATCCGTAGGAATCTACTTGGGTTAGTTCCTTTTTTTCCTCTGTTTTAACACATTGAATTAGATTTAAAATAAGATTTCTAATTTTGATTTTTTGAATTAATATAATTGAACCACCTCGCGACAACTGGTTTCCTTTGGAGGTTGTGGTTCAGGTGTGGATAACGGTGGCATAAGTACCCAAGACGAATGTGTAGCAACTATTGACGATGTTTCAGTAGTTAGCAGCAACATTTCTCTTCTTTTTGTCGAACCCCGACATTGACCCTCACTTAGTTTGGCTTCAAATCGAATTACCATAGTTCATAAAGTTCTGATCTGCAAGTTCGGACACTTTCAAACACGACCAACTAAGATCGGAGCCCTTCAATGGTAGGATTCAATGGGTAACTTAGCTCTAATTTGCTTTCGAAATGGATTTAGGTGTTTGAATTAGACTATAAGTCATTGGAGTTCTTCTATTGTTATGTTTGGGTCAATTTCGAATTTTGGATTAAGTCCTTGGATTTGAATATCCCTCTTTAACAGTCTTTCAATTATGATTAAGGTTTTTAAATTGTTTGATTTTTGTTTTCCATGAAAATGATCCAAAAGTAGAAGATGAAGGCAATTAGTAAACTTGAGGAATGTTTCTAAATTATTTATTAGGAATAGTAGAGTGTGTATTGTACATTTTTTATGGCCTTTTAGTTTCAGTTTTGGGTACTTAAGAATCATAAATGTGTTTGTTATATTTTAGGATCCATTGAAATGTTTGAAAATAAGATTGTCTGAGATCACAAGTTTAGGTGTTGGTGTAGATTATAGTTAGGAAATAATTAGAAGTAACTTTGATCAAGGAAGCGTAAATATTTGTGGAATTTTTTGAACAAAGTACCCACGATTTTTCTCTATTTGCGTCAAATTTCAAGCTGATTGTGCTAATGTTAATGGCTACCGTTGGTTTGGCTTTGCTGATCTTTGTCAATTGTAGCCATTTTGGAAACATTTTTTAATGTCTCCTTGCCATATTTGTGTATTTATTTTTATTAAAATTTACTTTCTTATCTTAATAAATGTTGACTTTTACTTTGCAACTTCGGAACTGTATTGGATCTACTGTAACTGCTATGGGACCTGAGAAGATACTTACTCTTATTCCCATATCCATTAATCCTGGCAACTCAACTGTGTAGAACATGTGGTTGATACCAGTTCTACATAGTCATGTTGTTGGAGCATCACTTGGATATTATCTAGAATATATTGTGCCCCTTGCAAAATCTTTTCAGGACGAGAGTTGTAAAGGTGATTTTTTAGTCCATATTTGGTTGATTTTGAATTTTATGGTTATGTAAGGTTGGGGGAGAGGATAATGTATTTTACCTTCAGCATATATTCTCTTCTAGGTAAATATTTTGGGTTTGTTATTGAATTCCATTTAACGTCTCCAATATCTCACAGTTAAGAAGATTACGTTGTGTAAAAATCAACGGACATGTGCTCGTAATTTGTGGAAATTACTACCTGCTTTTTGCTGCCATCCTACTGGTATGCACCGAAGAATTGGAATGCTTTCTGAACTTTTAATTACACTTCTTAAAGAAGACTCCTTTATGCATGAAGATATTGCTGCTGCCTTACAGGTCACATAATAATGTTGATTTTGGTGCTATTATATATTGTACTATTTTTTCCCTTTCCATTTCATTTTAATATTTTTATAAAGTTATGCCAATCCAAGAACAACTCATTGGATAAGGCACAAACTACTGTCCTAATAGTCATTTTCTCTTTAAACCTTTGTGTTTCTCGCTTTGTTATTGGGTTCTTACGTGTATGTTGTTAACGACACCCTTGGCTAGGAATGATTGTATTAACTTTAATATTTTGGGTTTCATAATAGATTAATACAAGGACCTCATACAATCAACTCGAGTTGGATGAAGTGTGAATGGAGCTTGCTTATTTTTTGGGTGCCCACATGTAATTATGGTGATAGCTAAGTTCTTTTAAGTTAGATAGACAAGTTTTGTTGATATTGGATATAGTTGAACTAGTTTTATTGATACTGGATATAGTTGAACTAGTTTTGTTGATACTAGATAAAGGTAAAAGACAAGTTTTGATATGGTACACCTTTAGGCTACACATATATTTTGTTTATATATTGACATTAATGAAAAGTTTAGGCTATTGTTAGATGCTTAGGCTACACATATATATTGTAATTAACTATGTAATCACCAACTTATATATGGTTCATTTGATATATATATATGCAATTTCTTTGATGTGTAGCCTGAGTTGATTTCTATTTTTCAATTGATGTGTATTTTAATATTGTTGGACTTCAAAACAGGTGAATGATAAAGTATATGGATATTTTAAAATATATAATTTTTTATTTGAACAAACCTTATATACTTGATACCTATAAACTGTCAAGTATAATTTCACTTGACGTGTAAAAACTGTAAAAAATAAGATCCCCTTATTCTTGACACTGGATTAGTTGACACATGAAAACTGTCAAGTATAATTATATACTTGACGCTTTTTCAATGTCAAGTATAATTATACTTGGCAATTATAAACTGTCAAGTAAACCTCCCTTATTCTTGACACTAGATTAGTTGAAACAGTGTCAAGTAAACCAATACTTGACAGTTAAAAAGCGTGAAGTAAACCCAGTTTTGTAGTAGTGTAGAAAGGTTTTCCAAAATCTTTACTAAGTATTTTGACTTACGTGTTTAAGTTTTCCTTCCCCAAGTGTTGAGGCGGCCAAGTAAGGAAAGGTAAGATGGATTGTGACGTTGGAAAGCTTATCAAGTTATTCGTCCCGGACGGTTTAGAGTTATTATGTGTAGGGAGGGTTGCATCTTAGTTTTGTGTGTGGGATGTGTCTTGTCTTCGAGATGGATGCTAGGCGATCAAGGAGAAGAATAAGAAAGGGGTTCTTATACTCTTGAACACCTTGATGCGAAGAGTACTAGGTTTTATTTTTATGTCTTACGAGAAAAGAGATGTAATTGTAAAATATTGGATCAAACAATAAAAGCAAAGTTGTGTTTTCTATTTTCGTTGTATTGGGTTGTGTATCTCTGTCGTGCTTATCGCTTAGTTGCTAAAGAGTTTAAGCATTAAAGGCTAGGCGATTAAGCTAAGTTGGCTGTTTAAGTGTTTTTCGTTGCATTGAGTTGTAAAGATCTCTTGAGTTCAAAGTGGAGCTATGCGTTGGGGATTTGCAAGAGAAGTTCCGCTTACTAGGCGTTCTACTCATTATCTTTCGGAGAGGTACGTGTTGGGTGTGTAGGTGGCACGCCTCCTTTTGGTCGCATGAAGTAGCATGTGGGGCAGGGCGTGACAAAATTGACCTAGG

mRNA sequence

CTTTTTTTCTCAATATTTTCCTTCTTCCCCGATTTTCTTCTTCTAGATTTTCTCCAAACTCACGTAGCTCCAGTCATTCATTCGTGCACTACCACCGAAGCTTCAATCAGCCGTTTGGACGCCACATTCGAGCTTAAGTCCATTCTGTTCGCTCCAAAGGTGCGTCAATCGTGCGCTCCAATCGTCTGCTTCACGTTATCGTTTAGAGATCGGAGACACATCAATCTTTTTTTCTCTTTTTTTCTCTTTTTATCTCTTTTTATCTCACTTTTTGCTGCATCCGTAGGAATCTACTTGGGTGTGGATAACGGTGGCATAAGTACCCAAGACGAATGTGTAGCAACTATTGACGATGTTTCAGTAGTTAGCAGCAACATTTCTCTTCTTTTTGTCGAACCCCGACATTGACCCTCACTTAGTTTGGCTTCAAATCGAATTACCATAGTTCATAAAGTTCTGATCTGCAAGTTCGGACACTTTCAAACACGACCAACTAAGATCGGAGCCCTTCAATGATACTTACTCTTATTCCCATATCCATTAATCCTGGCAACTCAACTGTGTAGAACATGTGGTTGATACCAGTTCTACATAGTCATGTTGTTGGAGCATCACTTGGATATTATCTAGAATATATTGTGCCCCTTGCAAAATCTTTTCAGGACGAGAGTTGTAAAGTTAAGAAGATTACGTTGTGTAAAAATCAACGGACATGTGCTCGTAATTTGTGGAAATTACTACCTGCTTTTTGCTGCCATCCTACTGGTATGCACCGAAGAATTGGAATGCTTTCTGAACTTTTAATTACACTTCTTAAAGAAGACTCCTTTATGCATGAAGATATTGCTGCTGCCTTACAGATTAATACAAGGACCTCATACAATCAACTCGAGTTGGATGAAGTGTGAATGGAGCTTGCTTATTTTTTGGGTGCCCACATGTAATTATGGTGATAGCTAAGTTCTTTTAAGTTAGATAGACAAGTTTTGTTGATATTGGATATAGTTGAACTAGTTTTATTGATACTGGATATAGTTGAACTAGTTTTGTTGATACTAGATAAAGGTAAAAGACAAGTTTTGATATGGTACACCTTTAGGCTACACATATATTTTGTTTATATATTGACATTAATGAAAAGTTTAGGCTATTGTTAGATGCTTAGGCTACACATATATATTGTAATTAACTATGTAATCACCAACTTATATATGGTTCATTTGATATATATATATGCAATTTCTTTGATGTGTAGCCTGAGTTGATTTCTATTTTTCAATTGATGTGTATTTTAATATTGTTGGACTTCAAAACAGGTGAATGATAAAGTATATGGATATTTTAAAATATATAATTTTTTATTTGAACAAACCTTATATACTTGATACCTATAAACTGTCAAGTATAATTTCACTTGACGTGTAAAAACTGTAAAAAATAAGATCCCCTTATTCTTGACACTGGATTAGTTGACACATGAAAACTGTCAAGTATAATTATATACTTGACGCTTTTTCAATGTCAAGTATAATTATACTTGGCAATTATAAACTGTCAAGTAAACCTCCCTTATTCTTGACACTAGATTAGTTGAAACAGTGTCAAGTAAACCAATACTTGACAGTTAAAAAGCGTGAAGTAAACCCAGTTTTGTAGTAGTGTAGAAAGGTTTTCCAAAATCTTTACTAAGTATTTTGACTTACGTGTTTAAGTTTTCCTTCCCCAAGTGTTGAGGCGGCCAAGTAAGGAAAGGTAAGATGGATTGTGACGTTGGAAAGCTTATCAAGTTATTCGTCCCGGACGGTTTAGAGTTATTATGTGTAGGGAGGGTTGCATCTTAGTTTTGTGTGTGGGATGTGTCTTGTCTTCGAGATGGATGCTAGGCGATCAAGGAGAAGAATAAGAAAGGGGTTCTTATACTCTTGAACACCTTGATGCGAAGAGTACTAGGTTTTATTTTTATGTCTTACGAGAAAAGAGATGTAATTGTAAAATATTGGATCAAACAATAAAAGCAAAGTTGTGTTTTCTATTTTCGTTGTATTGGGTTGTGTATCTCTGTCGTGCTTATCGCTTAGTTGCTAAAGAGTTTAAGCATTAAAGGCTAGGCGATTAAGCTAAGTTGGCTGTTTAAGTGTTTTTCGTTGCATTGAGTTGTAAAGATCTCTTGAGTTCAAAGTGGAGCTATGCGTTGGGGATTTGCAAGAGAAGTTCCGCTTACTAGGCGTTCTACTCATTATCTTTCGGAGAGGTACGTGTTGGGTGTGTAGGTGGCACGCCTCCTTTTGGTCGCATGAAGTAGCATGTGGGGCAGGGCGTGACAAAATTGACCTAGG

Coding sequence (CDS)

ATGTGGTTGATACCAGTTCTACATAGTCATGTTGTTGGAGCATCACTTGGATATTATCTAGAATATATTGTGCCCCTTGCAAAATCTTTTCAGGACGAGAGTTGTAAAGTTAAGAAGATTACGTTGTGTAAAAATCAACGGACATGTGCTCGTAATTTGTGGAAATTACTACCTGCTTTTTGCTGCCATCCTACTGGTATGCACCGAAGAATTGGAATGCTTTCTGAACTTTTAATTACACTTCTTAAAGAAGACTCCTTTATGCATGAAGATATTGCTGCTGCCTTACAGATTAATACAAGGACCTCATACAATCAACTCGAGTTGGATGAAGTGTGA

Protein sequence

MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAFCCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQINTRTSYNQLELDEV

Homology

[Close]

BLAST of Cmc04g0095651 vs. NCBI nr
Match: XP_004136785.1 (RRP12-like protein [Cucumis sativus] >KGN59491.1 hypothetical protein Csa_001385 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 4.6e-44
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1   MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAF 60
           MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKI  CKN RTCARNLWKLLPAF
Sbjct: 508 MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKIAACKNLRTCARNLWKLLPAF 567

Query: 61  CCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQI 99
           C HP+ MHRR+GMLSELLITLLKEDSFMHEDIAAALQ+
Sbjct: 568 CRHPSDMHRRMGMLSELLITLLKEDSFMHEDIAAALQV 605

[Close]

BLAST of Cmc04g0095651 vs. NCBI nr
Match: XP_008443313.1 (PREDICTED: RRP12-like protein [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 8.6e-43
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1   MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAF 60
           MWLIPVLHSHVVGASL YYLEYIVPLAKSFQD+SCKVKKI  CKN +TCARNLWKLLPAF
Sbjct: 508 MWLIPVLHSHVVGASLDYYLEYIVPLAKSFQDQSCKVKKIAACKNLQTCARNLWKLLPAF 567

Query: 61  CCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQI 99
           C HP+ MHRRIGMLSELLITLLKEDSFMHEDIAAALQ+
Sbjct: 568 CRHPSDMHRRIGMLSELLITLLKEDSFMHEDIAAALQV 605

[Close]

BLAST of Cmc04g0095651 vs. NCBI nr
Match: KAA0053835.1 (RRP12-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 8.6e-43
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1   MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAF 60
           MWLIPVLHSHVVGASL YYLEYIVPLAKSFQD+SCKVKKI  CKN +TCARNLWKLLPAF
Sbjct: 508 MWLIPVLHSHVVGASLDYYLEYIVPLAKSFQDQSCKVKKIAACKNLQTCARNLWKLLPAF 567

Query: 61  CCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQI 99
           C HP+ MHRRIGMLSELLITLLKEDSFMHEDIAAALQ+
Sbjct: 568 CRHPSDMHRRIGMLSELLITLLKEDSFMHEDIAAALQV 605

[Close]

BLAST of Cmc04g0095651 vs. NCBI nr
Match: TYK25565.1 (RRP12-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 8.6e-43
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1   MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAF 60
           MWLIPVLHSHVVGASL YYLEYIVPLAKSFQD+SCKVKKI  CKN +TCARNLWKLLPAF
Sbjct: 567 MWLIPVLHSHVVGASLDYYLEYIVPLAKSFQDQSCKVKKIAACKNLQTCARNLWKLLPAF 626

Query: 61  CCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQI 99
           C HP+ MHRRIGMLSELLITLLKEDSFMHEDIAAALQ+
Sbjct: 627 CRHPSDMHRRIGMLSELLITLLKEDSFMHEDIAAALQV 664

[Close]

BLAST of Cmc04g0095651 vs. NCBI nr
Match: XP_038905709.1 (RRP12-like protein [Benincasa hispida])

HSP 1 Score: 168.7 bits (426), Expect = 2.9e-38
Identity = 80/98 (81.63%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 1   MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAF 60
           MWL+PVL SHVVG SLGYYLEYIVPLAK FQDES KVKKI  CKN +TCA NLW+LLPAF
Sbjct: 502 MWLVPVLQSHVVGGSLGYYLEYIVPLAKYFQDESSKVKKIATCKNLQTCACNLWRLLPAF 561

Query: 61  CCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQI 99
           C HP+ MH+RIGMLSELLITLLKEDSFMHED+A ALQ+
Sbjct: 562 CRHPSDMHQRIGMLSELLITLLKEDSFMHEDVAVALQV 599

[Close]

BLAST of Cmc04g0095651 vs. ExPASy Swiss-Prot
Match: Q5ZKD5 (RRP12-like protein OS=Gallus gallus OX=9031 GN=RRP12 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-06
Identity = 32/82 (39.02%), Postives = 41/82 (50.00%), Query Frame = 0


Query: 2   WLIPVLHSHVVGASLGYYLEYIVPLA---KSFQDESCKVKKITLCKNQRTCARNLWKLLP 61
           WL+PVL  +V GA LG++  Y +PLA   KS   E  +  K    K   T    +W LLP
Sbjct: 571 WLLPVLRDYVQGARLGFFTSYFLPLAATLKSRALEFAQAGKSLESKIYDTLQWQVWTLLP 630

Query: 62  AFCCHPT-------GMHRRIGM 74
            FC  PT       G+ R +GM
Sbjct: 631 GFCTRPTDVVEAFKGLARTLGM 652

[Close]

BLAST of Cmc04g0095651 vs. ExPASy Swiss-Prot
Match: Q5JTH9 (RRP12-like protein OS=Homo sapiens OX=9606 GN=RRP12 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 7.4e-05
Identity = 26/82 (31.71%), Postives = 39/82 (47.56%), Query Frame = 0


Query: 2   WLIPVLHSHVVGASLGYYLEYIVPLAKSFQDES---CKVKKITLCKNQRTCARNLWKLLP 61
           WL+PV+  HV    LG++  Y +PLA + + ++    +       K   T    +W LLP
Sbjct: 568 WLLPVIRDHVQETRLGFFTTYFLPLANTLKSKAMDLAQAGSTVESKIYDTLQWQMWTLLP 627

Query: 62  AFCCHPT-------GMHRRIGM 74
            FC  PT       G+ R +GM
Sbjct: 628 GFCTRPTDVAISFKGLARTLGM 649

[Close]

BLAST of Cmc04g0095651 vs. ExPASy Swiss-Prot
Match: Q6P5B0 (RRP12-like protein OS=Mus musculus OX=10090 GN=Rrp12 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.4e-05
Identity = 28/99 (28.28%), Postives = 45/99 (45.45%), Query Frame = 0


Query: 2   WLIPVLHSHVVGASLGYYLEYIVPLAKSFQDES---CKVKKITLCKNQRTCARNLWKLLP 61
           WL+PV+  HV    LG++  Y +PLA + + ++    +       K   T    +W LLP
Sbjct: 569 WLLPVIRDHVRETRLGFFTTYFLPLATTLKRKAMDLAQAGSTVESKIYDTLQWQIWTLLP 628

Query: 62  AFCCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQ 98
            FC  PT +      L+  L T + E   +   +  AL+
Sbjct: 629 GFCTRPTDVAASFKGLARTLGTAINERPDLRVTVCQALR 667

[Close]

BLAST of Cmc04g0095651 vs. ExPASy TrEMBL
Match: A0A0A0LHL3 (NUC173 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G822420 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.2e-44
Identity = 90/98 (91.84%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1   MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAF 60
           MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKI  CKN RTCARNLWKLLPAF
Sbjct: 508 MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKIAACKNLRTCARNLWKLLPAF 567

Query: 61  CCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQI 99
           C HP+ MHRR+GMLSELLITLLKEDSFMHEDIAAALQ+
Sbjct: 568 CRHPSDMHRRMGMLSELLITLLKEDSFMHEDIAAALQV 605

[Close]

BLAST of Cmc04g0095651 vs. ExPASy TrEMBL
Match: A0A5A7UJH3 (RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002250 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.2e-43
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1   MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAF 60
           MWLIPVLHSHVVGASL YYLEYIVPLAKSFQD+SCKVKKI  CKN +TCARNLWKLLPAF
Sbjct: 508 MWLIPVLHSHVVGASLDYYLEYIVPLAKSFQDQSCKVKKIAACKNLQTCARNLWKLLPAF 567

Query: 61  CCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQI 99
           C HP+ MHRRIGMLSELLITLLKEDSFMHEDIAAALQ+
Sbjct: 568 CRHPSDMHRRIGMLSELLITLLKEDSFMHEDIAAALQV 605

[Close]

BLAST of Cmc04g0095651 vs. ExPASy TrEMBL
Match: A0A5D3DPZ7 (RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007190 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.2e-43
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1   MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAF 60
           MWLIPVLHSHVVGASL YYLEYIVPLAKSFQD+SCKVKKI  CKN +TCARNLWKLLPAF
Sbjct: 567 MWLIPVLHSHVVGASLDYYLEYIVPLAKSFQDQSCKVKKIAACKNLQTCARNLWKLLPAF 626

Query: 61  CCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQI 99
           C HP+ MHRRIGMLSELLITLLKEDSFMHEDIAAALQ+
Sbjct: 627 CRHPSDMHRRIGMLSELLITLLKEDSFMHEDIAAALQV 664

[Close]

BLAST of Cmc04g0095651 vs. ExPASy TrEMBL
Match: A0A1S3B7P4 (RRP12-like protein OS=Cucumis melo OX=3656 GN=LOC103486929 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.2e-43
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1   MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAF 60
           MWLIPVLHSHVVGASL YYLEYIVPLAKSFQD+SCKVKKI  CKN +TCARNLWKLLPAF
Sbjct: 508 MWLIPVLHSHVVGASLDYYLEYIVPLAKSFQDQSCKVKKIAACKNLQTCARNLWKLLPAF 567

Query: 61  CCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQI 99
           C HP+ MHRRIGMLSELLITLLKEDSFMHEDIAAALQ+
Sbjct: 568 CRHPSDMHRRIGMLSELLITLLKEDSFMHEDIAAALQV 605

[Close]

BLAST of Cmc04g0095651 vs. ExPASy TrEMBL
Match: A0A6J1DUR8 (RRP12-like protein OS=Momordica charantia OX=3673 GN=LOC111023663 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.4e-36
Identity = 74/98 (75.51%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1   MWLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAF 60
           MWL+P+L SHV+GASLGYYLE+IVPLAKSFQ ESCKVKK T  KN +TCA NLW+LLPAF
Sbjct: 520 MWLVPILQSHVIGASLGYYLEHIVPLAKSFQQESCKVKKTTTRKNLQTCACNLWRLLPAF 579

Query: 61  CCHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQI 99
           C HP+ MH+ IG+L+E LITLLKEDSFMHEDIA A+Q+
Sbjct: 580 CRHPSDMHQSIGILTEFLITLLKEDSFMHEDIAVAIQV 617

[Close]

BLAST of Cmc04g0095651 vs. TAIR 10
Match: AT4G23540.1 (ARM repeat superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 4.9e-20
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 2   WLIPVLHSHVVGASLGYYLEYIVPLAKSFQDESCKVKKITLCKNQRTCARNLWKLLPAFC 61
           WLIP+L  +++GASL YY++ IVPLAKS    S   KK T  K  R C   L +LLPAFC
Sbjct: 505 WLIPILRKYIIGASLAYYVDNIVPLAKSLMLASKGAKKSTHGKELRACGHELLRLLPAFC 564

Query: 62  CHPTGMHRRIGMLSELLITLLKEDSFMHEDIAAALQI 99
            +P  +  + G L++L++  +K+ SFMHE +A +LQ+
Sbjct: 565 NYPVDVANKFGSLAKLMVKFIKKKSFMHEAVALSLQM 601

The following BLAST results are available for this feature:

BLAST of Cmc04g0095651 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136785.1	4.6e-44	91.84	RRP12-like protein [Cucumis sativus] >KGN59491.1 hypothetical protein Csa_001385...	[more]
XP_008443313.1	8.6e-43	89.80	PREDICTED: RRP12-like protein [Cucumis melo]	[more]
KAA0053835.1	8.6e-43	89.80	RRP12-like protein [Cucumis melo var. makuwa]	[more]
TYK25565.1	8.6e-43	89.80	RRP12-like protein [Cucumis melo var. makuwa]	[more]
XP_038905709.1	2.9e-38	81.63	RRP12-like protein [Benincasa hispida]	[more]

BLAST of Cmc04g0095651 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZKD5	3.9e-06	39.02	RRP12-like protein OS=Gallus gallus OX=9031 GN=RRP12 PE=2 SV=1	[more]
Q5JTH9	7.4e-05	31.71	RRP12-like protein OS=Homo sapiens OX=9606 GN=RRP12 PE=1 SV=2	[more]
Q6P5B0	7.4e-05	28.28	RRP12-like protein OS=Mus musculus OX=10090 GN=Rrp12 PE=1 SV=1	[more]

BLAST of Cmc04g0095651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHL3	2.2e-44	91.84	NUC173 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G822420 PE=3...	[more]
A0A5A7UJH3	4.2e-43	89.80	RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G0...	[more]
A0A5D3DPZ7	4.2e-43	89.80	RRP12-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G0...	[more]
A0A1S3B7P4	4.2e-43	89.80	RRP12-like protein OS=Cucumis melo OX=3656 GN=LOC103486929 PE=3 SV=1	[more]
A0A6J1DUR8	6.4e-36	75.51	RRP12-like protein OS=Momordica charantia OX=3673 GN=LOC111023663 PE=3 SV=1	[more]

BLAST of Cmc04g0095651 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23540.1	4.9e-20	46.39	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012978	Uncharacterised domain NUC173	PFAM	PF08161	NUC173	coord: 2..97 e-value: 6.7E-22 score: 78.2
None	No IPR available	PANTHER	PTHR21576	UNCHARACTERIZED NODULIN-LIKE PROTEIN	coord: 1..98
None	No IPR available	PANTHER	PTHR21576:SF81	ARM REPEAT SUPERFAMILY PROTEIN	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0095651.1	Cmc04g0095651.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus