Cmc04g0095131 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0095131
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 8271629 .. 8272147 (-)
RNA-Seq Expression	Cmc04g0095131
Synteny	Cmc04g0095131

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTTGGCTTGACAAATGCTCCTTCTGTATTTATGGATCTGATGAACAGGGTGTTTAAGGATTTCTTAGATACTTTTGTTATAGTTTTTATTGATGATACCTTGGTTTACTCCAAGACAGAGGCTGGGCATGAGGAGCATTTGCCTCAGGTTTTGGATATTCTTCGAGCTAATAAGCTATATGCTAAGTTTTCTAAATGTGAGTTTTAGCGGAAGAATGTGTCTTTTCTTTGCCATGTAGTATCTAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATTGAAGCTGTTACCAGTTGGCCTCGACCTTCTACAGTCAGTGAAGTTCATAGTTTTCTGGGTTTAGCAGAATATTACAGAAGGTTTGTGGAAGATTTCTCTCGTATAGCCAGTCCTTTGACTCAATTGACTAGGAAAGGGGCTCCTTTTGTTTGGAGCCCAACATGTGAGAGTAGTTTCCAGGATCTTAAGCGGAAGCTTGTTACTGCACTAGTCCTTACAATGCCAGATGAATCTTGA

mRNA sequence

ATGTTTTTTGGCTTGACAAATGCTCCTTCTGTATTTATGGATCTGATGAACAGGGTGTTTAAGGATTTCTTAGATACTTTTGTTATAGTTTTTATTGATGATACCTTGGTTTACTCCAAGACAGAGGCTGGGCATGAGGAGCATTTGCCTCAGGTTTTGGATATTCTTCGAGCTAATAAGCTATATGCTAAGTTTTCTAAATTATCTAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATTGAAGCTGTTACCAGTTGGCCTCGACCTTCTACAGTCAGTGAAGTTCATAGTTTTCTGGGTTTAGCAGAATATTACAGAAGGTTTGTGGAAGATTTCTCTCGTATAGCCAGTCCTTTGACTCAATTGACTAGGAAAGGGGCTCCTTTTGTTTGGAGCCCAACATGTGAGAGTAGTTTCCAGGATCTTAAGCGGAAGCTTGTTACTGCACTAGTCCTTACAATGCCAGATGAATCTTGA

Coding sequence (CDS)

ATGTTTTTTGGCTTGACAAATGCTCCTTCTGTATTTATGGATCTGATGAACAGGGTGTTTAAGGATTTCTTAGATACTTTTGTTATAGTTTTTATTGATGATACCTTGGTTTACTCCAAGACAGAGGCTGGGCATGAGGAGCATTTGCCTCAGGTTTTGGATATTCTTCGAGCTAATAAGCTATATGCTAAGTTTTCTAAATTATCTAGTGAGGGAGTTTCTGTAGACCCAGCAAAGATTGAAGCTGTTACCAGTTGGCCTCGACCTTCTACAGTCAGTGAAGTTCATAGTTTTCTGGGTTTAGCAGAATATTACAGAAGGTTTGTGGAAGATTTCTCTCGTATAGCCAGTCCTTTGACTCAATTGACTAGGAAAGGGGCTCCTTTTGTTTGGAGCCCAACATGTGAGAGTAGTTTCCAGGATCTTAAGCGGAAGCTTGTTACTGCACTAGTCCTTACAATGCCAGATGAATCTTGA

Protein sequence

MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANKLYAKFSKLSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYRRFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVLTMPDES

Homology

[Close]

BLAST of Cmc04g0095131 vs. NCBI nr
Match: KAA0066951.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 1.9e-67
Identity = 137/172 (79.65%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M FGLTNAP+VFMDLMNRVFKDFLD+FVIVFIDD L+YSKTEA HEEHL QVL+ LRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           LYAKFSK              +SSEGVSVDPAKIEAVT+WPRPSTVSE+ SFLGLA YYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVLTMPDES 159
           RFVEDFSRIASPLTQLTRKG PFVWSP CESSFQ+LK+KLVTA VLT+PD S
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGS 692

[Close]

BLAST of Cmc04g0095131 vs. NCBI nr
Match: KAA0054634.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 1.9e-67
Identity = 137/172 (79.65%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M FGLTNAP+VFMDLMNRVFKDFLD+FVIVFIDD L+YSKTEA HEEHL QVL+ LRANK
Sbjct: 682 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 741

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           LYAKFSK              +SSEGVSVDPAKIEAVT+WPRPSTVSE+ SFLGLA YYR
Sbjct: 742 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 801

Query: 121 RFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVLTMPDES 159
           RFVEDFSRIASPLTQLTRKG PFVWSP CESSFQ+LK+KLVTA VLT+PD S
Sbjct: 802 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGS 853

[Close]

BLAST of Cmc04g0095131 vs. NCBI nr
Match: KAA0051719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 3.2e-67
Identity = 137/172 (79.65%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M FGLTNAP+VFMDLMNRVFKDFLD+FVIVFIDD L+YSKTEA HEEHL QVL+ LRANK
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           LYAKFSK              +SSEGVSVDPAKIEAVT+WPRPSTVSE+ SFLGLA YYR
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVLTMPDES 159
           RFVEDFSRIASPLTQLTR+G PFVWSPTCESSFQ LK+KLVTA VLT+PD S
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGS 844

[Close]

BLAST of Cmc04g0095131 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 3.2e-67
Identity = 137/172 (79.65%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M FGLTNAP+VFMDLMNRVFKDFLD+FVIVFIDD L+YSKTEA HEEHL QVL+ LRANK
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           LYAKFSK              +SSEGVSVDPAKIEAVT+WPRPSTVSE+ SFLGLA YYR
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVLTMPDES 159
           RFVEDFSRIASPLTQLTR+G PFVWSPTCESSFQ LK+KLVTA VLT+PD S
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGS 844

[Close]

BLAST of Cmc04g0095131 vs. NCBI nr
Match: KAA0058812.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 3.2e-67
Identity = 136/172 (79.07%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M FGLTNAP+VFMDLMNRVFKDF+D+FVIVFIDD L+YSKTEA HEEHL QVL+ LRANK
Sbjct: 600 MSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 659

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           LYAKFSK              +SSEGVSVDPAKIEAVT+WPRPSTVSE+ SFLGLA YYR
Sbjct: 660 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 719

Query: 121 RFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVLTMPDES 159
           RFVEDFSRIASPLTQLTRKG PFVWSP CESSFQ+LK+KLVTA VLT+PD S
Sbjct: 720 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGS 771

[Close]

BLAST of Cmc04g0095131 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-20
Identity = 54/178 (30.34%), Postives = 91/178 (51.12%), Query Frame = 0


Query: 3   FGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANKLY 62
           FGL NAP++F  +++ + ++ +     V+IDD +V+S+    H ++L  VL  L    L 
Sbjct: 252 FGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQ 311

Query: 63  AKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYRRF 122
               K              ++++G+  DP K+ A++  P P++V E+  FLG+  YYR+F
Sbjct: 312 VNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKF 371

Query: 123 VEDFSRIASPLTQLTR-----------KGAPFVWSPTCESSFQDLKRKLVTALVLTMP 156
           ++D++++A PLT LTR              P     T   SF DLK  L ++ +L  P
Sbjct: 372 IQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

[Close]

BLAST of Cmc04g0095131 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-19
Identity = 57/180 (31.67%), Postives = 95/180 (52.78%), Query Frame = 0


Query: 3   FGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDIL-----R 62
           FGL NA S+F   ++ V ++ +     V++DD +++S+ E+ H  H+  VL  L     R
Sbjct: 311 FGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMR 370

Query: 63  ANKLYAKFSK---------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYRRF 122
            ++   +F K         +S +G   DP K++A+  +P P  V +V SFLGLA YYR F
Sbjct: 371 VSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVF 430

Query: 123 VEDFSRIASPLTQLTR-----------KGAPFVWSPTCESSFQDLKRKLVTA-LVLTMPD 157
           ++DF+ IA P+T + +           K  P  ++ T  ++FQ L+  L +  ++L  PD
Sbjct: 431 IKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPD 490

[Close]

BLAST of Cmc04g0095131 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-18
Identity = 54/171 (31.58%), Postives = 90/171 (52.63%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M FGL NAP+ F   MN + +  L+   +V++DD +V+S +   H + L  V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           L  +  K              L+ +G+  +P KIEA+  +P P+   E+ +FLGL  YYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEDFSRIASPLTQLTRKGAPF-VWSPTCESSFQDLKRKLVTALVLTMPD 157
           +F+ +F+ IA P+T+  +K       +P  +S+F+ LK  +    +L +PD
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPD 504

[Close]

BLAST of Cmc04g0095131 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-17
Identity = 48/125 (38.40%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 48  HLPQVLDILRANKLYAKFSK----------------LSSEGVSVDPAKIEAVTSWPRPST 107
           HL  VL I   ++ YA   K                +S EGVS DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEVHSFLGLAEYYRRFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALV 157
            +E+  FLGL  YYRRFV+++ +I  PLT+L +K +   W+     +F+ LK  + T  V
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

[Close]

BLAST of Cmc04g0095131 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-16
Identity = 46/166 (27.71%), Postives = 85/166 (51.20%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M +G++ AP+ F   +N +  +  ++ V+ ++DD L++SK+E+ H +H+  VL  L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           L    +K              +S +G +     I+ V  W +P    E+  FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVL 153
           +F+   S++  PL  L +K   + W+PT   + +++K+ LV+  VL
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699

[Close]

BLAST of Cmc04g0095131 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 9.0e-68
Identity = 137/172 (79.65%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M FGLTNAP+VFMDLMNRVFKDFLD+FVIVFIDD L+YSKTEA HEEHL QVL+ LRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           LYAKFSK              +SSEGVSVDPAKIEAVT+WPRPSTVSE+ SFLGLA YYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVLTMPDES 159
           RFVEDFSRIASPLTQLTRKG PFVWSP CESSFQ+LK+KLVTA VLT+PD S
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGS 692

[Close]

BLAST of Cmc04g0095131 vs. ExPASy TrEMBL
Match: A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 9.0e-68
Identity = 137/172 (79.65%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M FGLTNAP+VFMDLMNRVFKDFLD+FVIVFIDD L+YSKTEA HEEHL QVL+ LRANK
Sbjct: 682 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 741

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           LYAKFSK              +SSEGVSVDPAKIEAVT+WPRPSTVSE+ SFLGLA YYR
Sbjct: 742 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 801

Query: 121 RFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVLTMPDES 159
           RFVEDFSRIASPLTQLTRKG PFVWSP CESSFQ+LK+KLVTA VLT+PD S
Sbjct: 802 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGS 853

[Close]

BLAST of Cmc04g0095131 vs. ExPASy TrEMBL
Match: A0A5A7UE01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001050 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67
Identity = 137/172 (79.65%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M FGLTNAP+VFMDLMNRVFKDFLD+FVIVFIDD L+YSKTEA HEEHL QVL+ LRANK
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           LYAKFSK              +SSEGVSVDPAKIEAVT+WPRPSTVSE+ SFLGLA YYR
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVLTMPDES 159
           RFVEDFSRIASPLTQLTR+G PFVWSPTCESSFQ LK+KLVTA VLT+PD S
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGS 844

[Close]

BLAST of Cmc04g0095131 vs. ExPASy TrEMBL
Match: A0A5A7USG7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002890 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67
Identity = 136/172 (79.07%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M FGLTNAP+VFMDLMNRVFKDF+D+FVIVFIDD L+YSKTEA HEEHL QVL+ LRANK
Sbjct: 600 MSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 659

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           LYAKFSK              +SSEGVSVDPAKIEAVT+WPRPSTVSE+ SFLGLA YYR
Sbjct: 660 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 719

Query: 121 RFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVLTMPDES 159
           RFVEDFSRIASPLTQLTRKG PFVWSP CESSFQ+LK+KLVTA VLT+PD S
Sbjct: 720 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVTAPVLTVPDGS 771

[Close]

BLAST of Cmc04g0095131 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67
Identity = 137/172 (79.65%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MFFGLTNAPSVFMDLMNRVFKDFLDTFVIVFIDDTLVYSKTEAGHEEHLPQVLDILRANK 60
           M FGLTNAP+VFMDLMNRVFKDFLD+FVIVFIDD L+YSKTEA HEEHL QVL+ LRANK
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSK--------------LSSEGVSVDPAKIEAVTSWPRPSTVSEVHSFLGLAEYYR 120
           LYAKFSK              +SSEGVSVDPAKIEAVT+WPRPSTVSE+ SFLGLA YYR
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALVLTMPDES 159
           RFVEDFSRIASPLTQLTR+G PFVWSPTCESSFQ LK+KLVTA VLT+PD S
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLKQKLVTAPVLTVPDGS 844

[Close]

BLAST of Cmc04g0095131 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-18
Identity = 48/125 (38.40%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 48  HLPQVLDILRANKLYAKFSK----------------LSSEGVSVDPAKIEAVTSWPRPST 107
           HL  VL I   ++ YA   K                +S EGVS DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEVHSFLGLAEYYRRFVEDFSRIASPLTQLTRKGAPFVWSPTCESSFQDLKRKLVTALV 157
            +E+  FLGL  YYRRFV+++ +I  PLT+L +K +   W+     +F+ LK  + T  V
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

The following BLAST results are available for this feature:

BLAST of Cmc04g0095131 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066951.1	1.9e-67	79.65	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054634.1	1.9e-67	79.65	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051719.1	3.2e-67	79.65	pol protein [Cucumis melo var. makuwa]	[more]
TYK01306.1	3.2e-67	79.65	pol protein [Cucumis melo var. makuwa]	[more]
KAA0058812.1	3.2e-67	79.07	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0095131 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8I7P9	1.4e-20	30.34	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	1.1e-19	31.67	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P04323	1.7e-18	31.58	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P92523	1.8e-17	38.40	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0CT41	5.9e-16	27.71	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc04g0095131 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VMR4	9.0e-68	79.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UHL7	9.0e-68	79.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7UE01	1.5e-67	79.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]
A0A5A7USG7	1.5e-67	79.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33...	[more]
A0A5D3BSV9	1.5e-67	79.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82...	[more]

BLAST of Cmc04g0095131 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.3e-18	38.40	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..74 e-value: 2.1E-22 score: 81.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 78..158 e-value: 1.4E-30 score: 107.2
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..68 e-value: 2.3E-10 score: 40.4
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..150
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..150
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..67 e-value: 1.32645E-26 score: 96.8957
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0095131.1	Cmc04g0095131.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding