Cmc04g0094671 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0094671
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description30S ribosomal protein S12, chloroplastic
LocationCMiso1.1chr04: 7617343 .. 7617621 (+)
RNA-Seq ExpressionCmc04g0094671
SyntenyCmc04g0094671
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGATCGAATAAGCCCTTATCGAATAAAGATTCAGCCTCCTGTGAACCCTCAGGGACTGCCTTACGTAAAGTTGTCAGAGTATGCTTAACCTCGAGATTTGAAATCACTGCTTATATACCTAGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTATCCGGTGTGAGATATCACATTGTTCGAGGAACCTTAGATTCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGTGTTGTAG

mRNA sequence

ATGATTAGATCGAATAAGCCCTTATCGAATAAAGATTCAGCCTCCTGTGAACCCTCAGGGACTGCCTTACGTAAAGTTGTCAGAGTATGCTTAACCTCGAGATTTGAAATCACTGCTTATATACCTAGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTATCCGGTGTGAGATATCACATTGTTCGAGGAACCTTAGATTCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGTGTTGTAG

Coding sequence (CDS)

ATGATTAGATCGAATAAGCCCTTATCGAATAAAGATTCAGCCTCCTGTGAACCCTCAGGGACTGCCTTACGTAAAGTTGTCAGAGTATGCTTAACCTCGAGATTTGAAATCACTGCTTATATACCTAGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTATCCGGTGTGAGATATCACATTGTTCGAGGAACCTTAGATTCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGTGTTGTAG

Protein sequence

MIRSNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHIVRGTLDSVGVKDRQQGRSSVL
Homology
[Close]
BLAST of Cmc04g0094671 vs. NCBI nr
Match: QVD39936.1 (ribosomal protein S12 [Maerua crassifolia] >QVD39982.1 ribosomal protein S12 [Maerua crassifolia])

HSP 1 Score: 130.2 bits (326), Expect = 9.3e-27
Identity = 66/87 (75.86%), Postives = 73/87 (83.91%), Query Frame = 0 

Query: 6   KPLSNKDSASCEPSGTALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLS 65
           +P+   D+ + +   +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKDL 
Sbjct: 40  RPVQIIDTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP 99

Query: 66  GVRYHIVRGTLDSVGVKDRQQGRSSVL 93
           GVRYHIVRGTLD+VGVKDRQQGRSS L
Sbjct: 100 GVRYHIVRGTLDAVGVKDRQQGRSSAL 126

[Close]
BLAST of Cmc04g0094671 vs. NCBI nr
Match: YP_009000356.1 (rps12 protein [Arabis alpina] >YP_009000357.1 rps12 protein [Arabis alpina] >CCW28203.1 rps12 protein [Arabis alpina] >CCW28204.1 rps12 protein [Arabis alpina])

HSP 1 Score: 129.0 bits (323), Expect = 2.1e-26
Identity = 67/89 (75.28%), Postives = 73/89 (82.02%), Query Frame = 0 

Query: 4   SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKD 63
           SNK  +   + + +   +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKD
Sbjct: 30  SNKLFNGWHTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

Query: 64  LSGVRYHIVRGTLDSVGVKDRQQGRSSVL 93
           L GVRYHIVRGTLD+VGVKDRQQGRSS L
Sbjct: 90  LPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Cmc04g0094671 vs. NCBI nr
Match: QUI76316.1 (ribosomal protein S12 [Moricandia arvensis] >QUI76317.1 ribosomal protein S12 [Moricandia arvensis])

HSP 1 Score: 129.0 bits (323), Expect = 2.1e-26
Identity = 67/89 (75.28%), Postives = 73/89 (82.02%), Query Frame = 0 

Query: 4   SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKD 63
           SNK  +   + + +   +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKD
Sbjct: 30  SNKLFNGWHTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

Query: 64  LSGVRYHIVRGTLDSVGVKDRQQGRSSVL 93
           L GVRYHIVRGTLD+VGVKDRQQGRSS L
Sbjct: 90  LPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Cmc04g0094671 vs. NCBI nr
Match: YP_009353774.1 (ribosomal protein S12 [Alyssum desertorum] >YP_009353775.1 ribosomal protein S12 [Alyssum desertorum] >QIV23050.1 ribosomal protein S12 [Arabis scabra] >QWL25065.1 ribosomal protein S12 [Crambe hispanica subsp. abyssinica] >AQZ25103.1 ribosomal protein S12 [Alyssum desertorum] >AQZ25104.1 ribosomal protein S12 [Alyssum desertorum] >QIV23051.1 ribosomal protein S12 [Arabis scabra])

HSP 1 Score: 129.0 bits (323), Expect = 2.1e-26
Identity = 67/89 (75.28%), Postives = 73/89 (82.02%), Query Frame = 0 

Query: 4   SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKD 63
           SNK  +   + + +   +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKD
Sbjct: 30  SNKLFNGWHTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

Query: 64  LSGVRYHIVRGTLDSVGVKDRQQGRSSVL 93
           L GVRYHIVRGTLD+VGVKDRQQGRSS L
Sbjct: 90  LPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Cmc04g0094671 vs. NCBI nr
Match: YP_010041948.1 (ribosomal protein S12 [Dipterygium glaucum] >YP_010041993.1 ribosomal protein S12 [Dipterygium glaucum] >QVD39762.1 ribosomal protein S12 [Cadaba farinosa] >QVD39849.1 ribosomal protein S12 [Cadaba glandulosa] >QVD40024.1 ribosomal protein S12 [Maerua oblongifolia] >QPB45996.1 ribosomal protein S12 [Dipterygium glaucum] >QPB46077.1 ribosomal protein S12 [Dipterygium glaucum])

HSP 1 Score: 128.6 bits (322), Expect = 2.7e-26
Identity = 65/81 (80.25%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 12  DSASCEPSGTALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHI 71
           D+ + +   +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKDL GVRYHI
Sbjct: 46  DTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI 105

Query: 72  VRGTLDSVGVKDRQQGRSSVL 93
           VRGTLD+VGVKDRQQGRSS L
Sbjct: 106 VRGTLDAVGVKDRQQGRSSAL 126

[Close]
BLAST of Cmc04g0094671 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-28
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0 

Query: 21  TALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHIVRGTLDSVG 80
           +ALRKV RV LTS FEITAYIP IGHN QEHSVVLVRGGRVKDL GVRYHIVRGTLD+VG
Sbjct: 47  SALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG 106

Query: 81  VKDRQQGRSSVL 93
           VKDRQQGRSS L
Sbjct: 107 VKDRQQGRSSAL 118

[Close]
BLAST of Cmc04g0094671 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-28
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0 

Query: 21  TALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHIVRGTLDSVG 80
           +ALRKV RV LTS FEITAYIP IGHN QEHSVVLVRGGRVKDL GVRYHIVRGTLD+VG
Sbjct: 47  SALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG 106

Query: 81  VKDRQQGRSSVL 93
           VKDRQQGRSS L
Sbjct: 107 VKDRQQGRSSAL 118

[Close]
BLAST of Cmc04g0094671 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-28
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0 

Query: 21  TALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHIVRGTLDSVG 80
           +ALRKV RV LTS FEITAYIP IGHN QEHSVVLVRGGRVKDL GVRYHIVRGTLD+VG
Sbjct: 47  SALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG 106

Query: 81  VKDRQQGRSSVL 93
           VKDRQQGRSS L
Sbjct: 107 VKDRQQGRSSAL 118

[Close]
BLAST of Cmc04g0094671 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-28
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 21  TALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHIVRGTLDSVG 80
           +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKDL GVRYHIVRGTLD+VG
Sbjct: 47  SALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG 106

Query: 81  VKDRQQGRS 90
           VKDRQQGRS
Sbjct: 107 VKDRQQGRS 115

[Close]
BLAST of Cmc04g0094671 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-28
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 21  TALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHIVRGTLDSVG 80
           +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKDL GVRYHIVRGTLD+VG
Sbjct: 48  SALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG 107

Query: 81  VKDRQQGRS 90
           VKDRQQGRS
Sbjct: 108 VKDRQQGRS 116

[Close]
BLAST of Cmc04g0094671 vs. ExPASy TrEMBL
Match: W0USV5 (Rps12 protein OS=Arabis alpina OX=50452 GN=rps12 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-26
Identity = 67/89 (75.28%), Postives = 73/89 (82.02%), Query Frame = 0 

Query: 4   SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKD 63
           SNK  +   + + +   +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKD
Sbjct: 30  SNKLFNGWHTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

Query: 64  LSGVRYHIVRGTLDSVGVKDRQQGRSSVL 93
           L GVRYHIVRGTLD+VGVKDRQQGRSS L
Sbjct: 90  LPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Cmc04g0094671 vs. ExPASy TrEMBL
Match: A0A6H0MXN0 (Ribosomal protein S12 OS=Arabis scabra OX=50454 GN=rps12 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-26
Identity = 67/89 (75.28%), Postives = 73/89 (82.02%), Query Frame = 0 

Query: 4   SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKD 63
           SNK  +   + + +   +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKD
Sbjct: 30  SNKLFNGWHTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

Query: 64  LSGVRYHIVRGTLDSVGVKDRQQGRSSVL 93
           L GVRYHIVRGTLD+VGVKDRQQGRSS L
Sbjct: 90  LPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Cmc04g0094671 vs. ExPASy TrEMBL
Match: A0A1U9XLI2 (Ribosomal protein S12 OS=Alyssum desertorum OX=457768 GN=rps12 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-26
Identity = 67/89 (75.28%), Postives = 73/89 (82.02%), Query Frame = 0 

Query: 4   SNKPLSNKDSASCEPSGTALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKD 63
           SNK  +   + + +   +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKD
Sbjct: 30  SNKLFNGWHTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

Query: 64  LSGVRYHIVRGTLDSVGVKDRQQGRSSVL 93
           L GVRYHIVRGTLD+VGVKDRQQGRSS L
Sbjct: 90  LPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]
BLAST of Cmc04g0094671 vs. ExPASy TrEMBL
Match: A0A6M8PM28 (Ribosomal protein S12 OS=Biancaea sappan OX=483143 GN=rps12 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 65/81 (80.25%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 12  DSASCEPSGTALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHI 71
           D+ + +   +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKDL GVRYHI
Sbjct: 46  DTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI 105

Query: 72  VRGTLDSVGVKDRQQGRSSVL 93
           VRGTLD+VGVKDRQQGRSS L
Sbjct: 106 VRGTLDAVGVKDRQQGRSSAL 126

[Close]
BLAST of Cmc04g0094671 vs. ExPASy TrEMBL
Match: A0A161AMT2 (Ribosomal protein S12 OS=Prosopis glandulosa OX=102697 GN=rps12 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 65/81 (80.25%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 12  DSASCEPSGTALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHI 71
           D+ + +   +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKDL GVRYHI
Sbjct: 46  DTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI 105

Query: 72  VRGTLDSVGVKDRQQGRSSVL 93
           VRGTLD+VGVKDRQQGRSS L
Sbjct: 106 VRGTLDAVGVKDRQQGRSSAL 126

[Close]
BLAST of Cmc04g0094671 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 124.4 bits (311), Expect = 4.7e-29
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 21  TALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHIVRGTLDSVG 80
           +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKDL GVRYHIVRGTLD+VG
Sbjct: 47  SALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG 106

Query: 81  VKDRQQGRS 90
           VKDRQQGRS
Sbjct: 107 VKDRQQGRS 115

[Close]
BLAST of Cmc04g0094671 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 124.4 bits (311), Expect = 4.7e-29
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 21  TALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHIVRGTLDSVG 80
           +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKDL GVRYHIVRGTLD+VG
Sbjct: 47  SALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG 106

Query: 81  VKDRQQGRS 90
           VKDRQQGRS
Sbjct: 107 VKDRQQGRS 115

[Close]
BLAST of Cmc04g0094671 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 124.4 bits (311), Expect = 4.7e-29
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 21  TALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHIVRGTLDSVG 80
           +ALRKV RV LTS FEITAYIP IGHNLQEHSVVLVRGGRVKDL GVRYHIVRGTLD+VG
Sbjct: 47  SALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVG 106

Query: 81  VKDRQQGRS 90
           VKDRQQGRS
Sbjct: 107 VKDRQQGRS 115

[Close]
BLAST of Cmc04g0094671 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 80.5 bits (197), Expect = 7.8e-16
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 21  TALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHIVRGTLDSVG 80
           +A RK+ +V L++R +I A+IP  GHN QEHS VL+RGGRVKD  GV+ H +RG  D +G
Sbjct: 47  SAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMG 106

Query: 81  VKDRQQGRS 90
           +  R++GRS
Sbjct: 107 IPGRRRGRS 115

[Close]
BLAST of Cmc04g0094671 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 80.5 bits (197), Expect = 7.8e-16
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 21  TALRKVVRVCLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLSGVRYHIVRGTLDSVG 80
           +A RK+ +V L++R +I A+IP  GHN QEHS VL+RGGRVKD  GV+ H +RG  D +G
Sbjct: 47  SAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMG 106

Query: 81  VKDRQQGRS 90
           +  R++GRS
Sbjct: 107 IPGRRRGRS 115

The following BLAST results are available for this feature:
BLAST of Cmc04g0094671 vs. NCBI nr
Match NameE-valueIdentityDescription
QVD39936.19.3e-2775.86ribosomal protein S12 [Maerua crassifolia] >QVD39982.1 ribosomal protein S12 [Ma... [more]
YP_009000356.12.1e-2675.28rps12 protein [Arabis alpina] >YP_009000357.1 rps12 protein [Arabis alpina] >CCW... [more]
QUI76316.12.1e-2675.28ribosomal protein S12 [Moricandia arvensis] >QUI76317.1 ribosomal protein S12 [M... [more]
YP_009353774.12.1e-2675.28ribosomal protein S12 [Alyssum desertorum] >YP_009353775.1 ribosomal protein S12... [more]
YP_010041948.12.7e-2680.25ribosomal protein S12 [Dipterygium glaucum] >YP_010041993.1 ribosomal protein S1... [more]
BLAST of Cmc04g0094671 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1KXY03.0e-2887.5030S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A... [more]
Q332V33.0e-2887.5030S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE... [more]
Q0G9J53.0e-2887.5030S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r... [more]
A4QJV56.7e-2889.8630S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
A4QJX76.7e-2889.8630S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
BLAST of Cmc04g0094671 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
W0USV51.0e-2675.28Rps12 protein OS=Arabis alpina OX=50452 GN=rps12 PE=3 SV=1[more]
A0A6H0MXN01.0e-2675.28Ribosomal protein S12 OS=Arabis scabra OX=50454 GN=rps12 PE=3 SV=1[more]
A0A1U9XLI21.0e-2675.28Ribosomal protein S12 OS=Alyssum desertorum OX=457768 GN=rps12 PE=3 SV=1[more]
A0A6M8PM281.3e-2680.25Ribosomal protein S12 OS=Biancaea sappan OX=483143 GN=rps12 PE=3 SV=1[more]
A0A161AMT21.3e-2680.25Ribosomal protein S12 OS=Prosopis glandulosa OX=102697 GN=rps12 PE=3 SV=1[more]
BLAST of Cmc04g0094671 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00065.14.7e-2989.86ribosomal protein S12A [more]
ATCG01230.14.7e-2989.86ribosomal protein S12B [more]
ATCG00905.14.7e-2989.86ribosomal protein S12C [more]
AT2G07675.17.8e-1653.62Ribosomal protein S12/S23 family protein [more]
ATMG00980.17.8e-1653.62Ribosomal protein S12/S23 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 32..51
score: 68.61
coord: 51..68
score: 83.1
coord: 68..84
score: 63.15
coord: 84..92
score: 32.37
coord: 16..31
score: 42.8
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 21..87
e-value: 4.8E-21
score: 74.5
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 20..90
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 21..90
e-value: 1.7E-34
score: 116.4
NoneNo IPR availableGENE3D2.40.50.140coord: 18..91
e-value: 1.6E-33
score: 117.1
NoneNo IPR availablePANTHERPTHR11652:SF5230S RIBOSOMAL PROTEIN S12-Bcoord: 20..90
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 21..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0094671.1Cmc04g0094671.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome