Cmc04g0094501 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0094501
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionbeta-glucosidase 18-like
LocationCMiso1.1chr04: 7306117 .. 7306490 (-)
RNA-Seq ExpressionCmc04g0094501
SyntenyCmc04g0094501
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGATATTATCTGTTTGTTGGTATTCCTATTCTGCTCATAATTTAAGCTCAATAAATTCGATCAATTTGGGAATCGCAGTCAGAGCTAAGAATGGGCACCAATCCCAAAATGCTTCCATTTTTCTCTTCTTTTTTCCTCTTCCTTTTGGTTTCCAGCTCTCATCACAGTTTTGCCCTACAAAATGAAGAAGAAGAAGAAGGAATAATAAATAGAAGAGATTTTCCAAAGGATTTCTTTTTTGGAACTGCTACTTCTGCTTATCAGGCACTACTCATTCATTTCTTCTTAATTTTTCTATTTTTGGATCTCTTTTATTTTATTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTTAATTTTGTTGATGGGAACAG

mRNA sequence

TCTGATATTATCTGTTTGTTGGTATTCCTATTCTGCTCATAATTTAAGCTCAATAAATTCGATCAATTTGGGAATCGCAGTCAGAGCTAAGAATGGGCACCAATCCCAAAATGCTTCCATTTTTCTCTTCTTTTTTCCTCTTCCTTTTGGTTTCCAGCTCTCATCACAGTTTTGCCCTACAAAATGAAGAAGAAGAAGAAGGAATAATAAATAGAAGAGATTTTCCAAAGGATTTCTTTTTTGGAACTGCTACTTCTGCTTATCAGGCACTACTCATTCATTTCTTCTTAATTTTTCTATTTTTGGATCTCTTTTATTTTATTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTTAATTTTGTTGATGGGAACAG

Coding sequence (CDS)

ATGGGCACCAATCCCAAAATGCTTCCATTTTTCTCTTCTTTTTTCCTCTTCCTTTTGGTTTCCAGCTCTCATCACAGTTTTGCCCTACAAAATGAAGAAGAAGAAGAAGGAATAATAAATAGAAGAGATTTTCCAAAGGATTTCTTTTTTGGAACTGCTACTTCTGCTTATCAGGCACTACTCATTCATTTCTTCTTAATTTTTCTATTTTTGGATCTCTTTTATTTTATTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTTAA

Protein sequence

MGTNPKMLPFFSSFFLFLLVSSSHHSFALQNEEEEEGIINRRDFPKDFFFGTATSAYQALLIHFFLIFLFLDLFYFILSLSLSLSLS
Homology
BLAST of Cmc04g0094501 vs. NCBI nr
Match: XP_011652391.1 (beta-glucosidase 18 isoform X2 [Cucumis sativus] >KGN60041.2 hypothetical protein Csa_002103 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 50/61 (81.97%), Postives = 52/61 (85.25%), Query Frame = 0

Query: 1  MGTNPKMLPFFSSFFLFLLVSSSHHSFALQN---EEEEEGIINRRDFPKDFFFGTATSAY 59
          MGT PK+ PF SSFFLFLLV SSHH FA+QN   EEEEEGII RRDFPKDFFFGTATSAY
Sbjct: 1  MGTKPKIHPFLSSFFLFLLV-SSHHCFAVQNEEEEEEEEGIIKRRDFPKDFFFGTATSAY 60

BLAST of Cmc04g0094501 vs. NCBI nr
Match: XP_011652390.1 (beta-glucosidase 18 isoform X1 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 50/61 (81.97%), Postives = 52/61 (85.25%), Query Frame = 0

Query: 1  MGTNPKMLPFFSSFFLFLLVSSSHHSFALQN---EEEEEGIINRRDFPKDFFFGTATSAY 59
          MGT PK+ PF SSFFLFLLV SSHH FA+QN   EEEEEGII RRDFPKDFFFGTATSAY
Sbjct: 1  MGTKPKIHPFLSSFFLFLLV-SSHHCFAVQNEEEEEEEEGIIKRRDFPKDFFFGTATSAY 60

BLAST of Cmc04g0094501 vs. NCBI nr
Match: XP_038896554.1 (beta-glucosidase 18-like [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-08
Identity = 38/58 (65.52%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 1   MGTNPKMLPFFSSFFLFLLVSSSHHSFALQNEEEEEGIINRRDFPKDFFFGTATSAYQ 59
           M T  K+LPFFS FF FLL+  SH SF  QNEEEE   I R DFP+ FFFGTATS+YQ
Sbjct: 135 MDTKTKILPFFSCFF-FLLLLCSHQSFG-QNEEEEAEEIKRSDFPEHFFFGTATSSYQ 190

BLAST of Cmc04g0094501 vs. NCBI nr
Match: XP_038898509.1 (beta-glucosidase 18-like [Benincasa hispida])

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-05
Identity = 35/58 (60.34%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 1  MGTNPKMLPFFSSFFLFLLVSSSHHSFALQNEEEEEGIINRRDFPKDFFFGTATSAYQ 59
          MGT  K+ PFFS FFL  L  S   SF  QNEEE    I R DFP+ FFFGTATS+YQ
Sbjct: 1  MGTKTKIFPFFSYFFLLFLFFSD-ESFG-QNEEE----IKRSDFPEHFFFGTATSSYQ 52

BLAST of Cmc04g0094501 vs. NCBI nr
Match: XP_022935755.1 (beta-glucosidase 18-like [Cucurbita moschata])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 1  MGTNPKMLPFFSSFFLFLLVSS--SHHSFALQNEEEEEGIINRRDFPKDFFFGTATSAYQ 59
          MGT  K+LPF SS  L L ++S  S  SFA QNEE+E+  I R DFP  F FGTATS+YQ
Sbjct: 1  MGT--KILPFCSSLLLILCIASHPSAQSFA-QNEEQEQQEIKRSDFPDHFLFGTATSSYQ 57

BLAST of Cmc04g0094501 vs. ExPASy TrEMBL
Match: A0A6J1IH03 (beta-glucosidase 18-like OS=Cucurbita maxima OX=3661 GN=LOC111476863 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 1  MGTNPKMLPFFSSFFLFLLVSS--SHHSFALQNEEEEEGIINRRDFPKDFFFGTATSAYQ 59
          MGT  K+LPF SS  L L ++S  S  SFA QNEE+E+  I R DFP+ F FGTATS+YQ
Sbjct: 1  MGT--KILPFCSSLLLILCLASHPSAQSFA-QNEEQEQQEIKRSDFPEHFLFGTATSSYQ 57

BLAST of Cmc04g0094501 vs. ExPASy TrEMBL
Match: A0A6J1FBJ3 (beta-glucosidase 18-like OS=Cucurbita moschata OX=3662 GN=LOC111442578 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-05
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 1  MGTNPKMLPFFSSFFLFLLVSS--SHHSFALQNEEEEEGIINRRDFPKDFFFGTATSAYQ 59
          MGT  K+LPF SS  L L ++S  S  SFA QNEE+E+  I R DFP  F FGTATS+YQ
Sbjct: 1  MGT--KILPFCSSLLLILCIASHPSAQSFA-QNEEQEQQEIKRSDFPDHFLFGTATSSYQ 57

BLAST of Cmc04g0094501 vs. ExPASy TrEMBL
Match: A0A0A0LFY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852480 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.6e-04
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 6  KMLPFFSSFFLFLLVSSSHHSFALQNEEEEEGIINRRDFPKDFFFGTATSAYQ 59
          KM PFF  F L LLVS   HS+  ++EE+E   I R DFPK FFFG +TS+YQ
Sbjct: 4  KMHPFFFCFLLLLLVSP--HSYG-ESEEDEFEEIKRSDFPKHFFFGASTSSYQ 53

BLAST of Cmc04g0094501 vs. TAIR 10
Match: AT5G44640.1 (beta glucosidase 13 )

HSP 1 Score: 40.4 bits (93), Expect = 8.5e-04
Identity = 20/48 (41.67%), Postives = 30/48 (62.50%), Query Frame = 0

Query: 11 FSSFFLFLLVSSSHHSFALQNEEEEEGIINRRDFPKDFFFGTATSAYQ 59
          + S  +F++V +S+   A ++    +  + R DFPKDF FG ATSAYQ
Sbjct: 5  YFSLLVFIIVLASNEVIAKKHSSTPK--LRRSDFPKDFIFGAATSAYQ 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011652391.12.4e-1681.97beta-glucosidase 18 isoform X2 [Cucumis sativus] >KGN60041.2 hypothetical protei... [more]
XP_011652390.12.4e-1681.97beta-glucosidase 18 isoform X1 [Cucumis sativus][more]
XP_038896554.11.8e-0865.52beta-glucosidase 18-like [Benincasa hispida][more]
XP_038898509.12.5e-0560.34beta-glucosidase 18-like [Benincasa hispida][more]
XP_022935755.11.2e-0458.33beta-glucosidase 18-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IH036.0e-0558.33beta-glucosidase 18-like OS=Cucurbita maxima OX=3661 GN=LOC111476863 PE=3 SV=1[more]
A0A6J1FBJ36.0e-0558.33beta-glucosidase 18-like OS=Cucurbita moschata OX=3662 GN=LOC111442578 PE=3 SV=1[more]
A0A0A0LFY46.6e-0456.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852480 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G44640.18.5e-0441.67beta glucosidase 13 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.20.20.80Glycosidasescoord: 22..60
e-value: 1.4E-5
score: 25.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0094501.1Cmc04g0094501.1mRNA