Cmc04g0093351 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0093351
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr04: 5530482 .. 5531138 (-)
RNA-Seq Expression	Cmc04g0093351
Synteny	Cmc04g0093351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAAGGATTCAAAGTAAATGAGAGTGACAAATGTATCTACTATAAGACTGAAGGTAGGTTATGTCTTATTATATGCCTATACGTAGATGACATGTTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGGGTGCAAACTTTGACATGAAAGACCTAAGTGAAGTAGATGTAATCTTAGACATCAAAATTACAAGAACTGAAAATGGAATTTCCGTAGATCAATCTCATTACATAGAAAAGATTCTAAAAAAGTACAACTACTTTGAAAGTAAACCAGCTTATACACCTTATGACTCTAGTGTGAAATTATTCAAGAACATTGGTGATAGTGTTAACCAATTCGAGTACGCTAGTATCGTAAGTAGTTTGAGGTATGCTACTGATTGCATTAGACAAAACATAGCTTACACCATAGGACTACTATGTAGATTTACCAGCAGACCCAGTCTAGAACACTGGAATGCAATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTGGAATTACATTATAATAAATTTTCTGCTGTACTTGAAGGTTACAGCGATGCTGATTGGAACTCCCTCCCAAAGGACTCAAAGGCTACAAGTGGCTATATTTTTAATATAGCAGGAGGAGCTGTTGCTTGA

mRNA sequence

ATGTCAAAAGGATTCAAAGTAAATGAGAGTGACAAATGTATCTACTATAAGACTGAAGGTAGGTTATGTCTTATTATATGCCTATACGTAGATGACATGTTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGGGTGCAAACTTTGACATGAAAGACCTAAGTGAAGTAGATGTAATCTTAGACATCAAAATTACAAGAACTGAAAATGGAATTTCCGTAGATCAATCTCATTACATAGAAAAGATTCTAAAAAAGTACAACTACTTTGAAAGTAAACCAGCTTATACACCTTATGACTCTAGTGTGAAATTATTCAAGAACATTGGTGATAGTGTTAACCAATTCGAGTACGCTAGTATCGTAAGTAGTTTGAGGTATGCTACTGATTGCATTAGACAAAACATAGCTTACACCATAGGACTACTATGTAGATTTACCAGCAGACCCAGTCTAGAACACTGGAATGCAATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTGGAATTACATTATAATAAATTTTCTGCTGTACTTGAAGGTTACAGCGATGCTGATTGGAACTCCCTCCCAAAGGACTCAAAGGCTACAAGTGGCTATATTTTTAATATAGCAGGAGGAGCTGTTGCTTGA

Coding sequence (CDS)

ATGTCAAAAGGATTCAAAGTAAATGAGAGTGACAAATGTATCTACTATAAGACTGAAGGTAGGTTATGTCTTATTATATGCCTATACGTAGATGACATGTTAATCTTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTGGGTGCAAACTTTGACATGAAAGACCTAAGTGAAGTAGATGTAATCTTAGACATCAAAATTACAAGAACTGAAAATGGAATTTCCGTAGATCAATCTCATTACATAGAAAAGATTCTAAAAAAGTACAACTACTTTGAAAGTAAACCAGCTTATACACCTTATGACTCTAGTGTGAAATTATTCAAGAACATTGGTGATAGTGTTAACCAATTCGAGTACGCTAGTATCGTAAGTAGTTTGAGGTATGCTACTGATTGCATTAGACAAAACATAGCTTACACCATAGGACTACTATGTAGATTTACCAGCAGACCCAGTCTAGAACACTGGAATGCAATAGAGAGAGTAATGAGATACCTTAAGAAAACCCAAAACCTGGAATTACATTATAATAAATTTTCTGCTGTACTTGAAGGTTACAGCGATGCTGATTGGAACTCCCTCCCAAAGGACTCAAAGGCTACAAGTGGCTATATTTTTAATATAGCAGGAGGAGCTGTTGCTTGA

Protein sequence

MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLSEVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQFEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHYNKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA

Homology

[Close]

BLAST of Cmc04g0093351 vs. NCBI nr
Match: KAA0060459.1 (hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK18544.1 hypothetical protein E5676_scaffold119G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 385.2 bits (988), Expect = 3.8e-103
Identity = 190/218 (87.16%), Postives = 196/218 (89.91%), Query Frame = 0


Query: 1   MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLS 60
           MSKGFKVNESDKCIYYKTEGRLC+IICLYVDDMLIFGSNLHVINDVKSML  NFDMKDL 
Sbjct: 59  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLG 118

Query: 61  EVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQ 120
           E DVIL IKITRTENGI +DQSHYIEK LKKYNYF+SKP  TPYDSSVKLFKN GDSVNQ
Sbjct: 119 EADVILGIKITRTENGIFLDQSHYIEKTLKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQ 178

Query: 121 FEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHY 180
            EYASI+ SLRYA D  R +IAY +GLLCRFTSRPSLEHWNAIERVMRYLKKTQNL LHY
Sbjct: 179 TEYASIIGSLRYAVDYTRPSIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHY 238

Query: 181 NKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA 219
           NKF  VLEGYSDADWNSL  DSKATSGYIFNIAGGAVA
Sbjct: 239 NKFPVVLEGYSDADWNSLLDDSKATSGYIFNIAGGAVA 276

[Close]

BLAST of Cmc04g0093351 vs. NCBI nr
Match: KAA0032842.1 (hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK21198.1 hypothetical protein E5676_scaffold359G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 382.1 bits (980), Expect = 3.2e-102
Identity = 188/218 (86.24%), Postives = 195/218 (89.45%), Query Frame = 0


Query: 1   MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLS 60
           MSKGFKVNESDKCIYYK EGRLC+IICLYVDDMLIFGSNLHVINDVKSML  NFDMKDL 
Sbjct: 59  MSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLG 118

Query: 61  EVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQ 120
           E DVIL IKITR ENGIS+DQSHYIEKILKKYNYF+SKPA TPYDSSVKLFKN GDSVNQ
Sbjct: 119 EADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQ 178

Query: 121 FEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHY 180
            EYASI+ SLRYA DC R +IAY +GLLCRFTSRPSLEHWNAIERVMRYLKK QNL LHY
Sbjct: 179 SEYASIIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHY 238

Query: 181 NKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA 219
           NKF AVLEGY+DADWNS   DSKATSGYIFNIAG  VA
Sbjct: 239 NKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA 276

[Close]

BLAST of Cmc04g0093351 vs. NCBI nr
Match: TYK00058.1 (hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 379.4 bits (973), Expect = 2.1e-101
Identity = 188/218 (86.24%), Postives = 195/218 (89.45%), Query Frame = 0


Query: 1   MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLS 60
           MSKGFKVNESD+CIYYKTEGR+C+IICLYVDDMLIFGSNLH+INDVKSML ANFDMKDL 
Sbjct: 59  MSKGFKVNESDECIYYKTEGRVCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLG 118

Query: 61  EVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQ 120
           E DVIL IKI RTENGIS+DQSHYIEKILKKYNYFESKPA TPYDSSVKLFKN GDSVNQ
Sbjct: 119 EADVILGIKIARTENGISLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 178

Query: 121 FEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHY 180
            EYASI+ SLRYA DC R +IAYTIGLLCRFTSR SLEHWNAIERVMRYLKKTQNL LHY
Sbjct: 179 SEYASIIGSLRYAADCTRPDIAYTIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHY 238

Query: 181 NKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA 219
           NKFS VLEGY DADWNSL  DSKA SGYIF I   AVA
Sbjct: 239 NKFSTVLEGYIDADWNSLSDDSKAISGYIFKITEEAVA 276

[Close]

BLAST of Cmc04g0093351 vs. NCBI nr
Match: TYK06419.1 (hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 378.3 bits (970), Expect = 4.6e-101
Identity = 183/218 (83.94%), Postives = 198/218 (90.83%), Query Frame = 0


Query: 1   MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLS 60
           +SKGFKVNESDKCIYYKTEGRLC+IICLYVDD+LIFGSNL+VINDVKSML  NFDMK+L 
Sbjct: 106 LSKGFKVNESDKCIYYKTEGRLCIIICLYVDDILIFGSNLYVINDVKSMLSENFDMKELD 165

Query: 61  EVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQ 120
           E DVIL IKITRT+NGIS+DQSHYIEKILKKYNYF+SKP  TPYDSSVKLF+N GDSVNQ
Sbjct: 166 EADVILGIKITRTKNGISLDQSHYIEKILKKYNYFDSKPTCTPYDSSVKLFENTGDSVNQ 225

Query: 121 FEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHY 180
            EYASI+ SLRYA DC R +IAY +GLLCRFTSRPSLEHWN IER++RYLKKTQNL LHY
Sbjct: 226 SEYASIIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEHWNTIERIIRYLKKTQNLGLHY 285

Query: 181 NKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA 219
           NKF AVLEGY DADWNSL  +SKATSGYIFNIAGGAVA
Sbjct: 286 NKFPAVLEGYIDADWNSLSDNSKATSGYIFNIAGGAVA 323

[Close]

BLAST of Cmc04g0093351 vs. NCBI nr
Match: KAA0058878.1 (putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 374.4 bits (960), Expect = 6.7e-100
Identity = 180/218 (82.57%), Postives = 194/218 (88.99%), Query Frame = 0


Query: 1   MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLS 60
           MSKGFKVNESDKC+YYKT+GRLC+IICLYVDDML F SNLHVINDVKSML  NFDMKDL 
Sbjct: 175 MSKGFKVNESDKCMYYKTKGRLCIIICLYVDDMLSFVSNLHVINDVKSMLSVNFDMKDLG 234

Query: 61  EVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQ 120
           E D+IL IKITRT+NGIS+DQS+YIEKILKKYNYF+SKPA TPYDSSVKLFKN GD+VNQ
Sbjct: 235 EADIILGIKITRTKNGISLDQSYYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDNVNQ 294

Query: 121 FEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHY 180
            EY SI+ SLRY  DC R +IAY +GLLCRFTSRP LEHWNAIER+MRYLKKTQNL LHY
Sbjct: 295 SEYTSIIGSLRYVADCTRPDIAYAVGLLCRFTSRPCLEHWNAIERIMRYLKKTQNLGLHY 354

Query: 181 NKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA 219
           NKFS VLEGY+D DWNSL  DSKATSGYIFNIAGG VA
Sbjct: 355 NKFSTVLEGYNDVDWNSLSDDSKATSGYIFNIAGGVVA 392

[Close]

BLAST of Cmc04g0093351 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.3e-33
Identity = 81/220 (36.82%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 10   SDKCIYYK--TEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLSEVDVILD 69
            SD C+Y+K  +E    +I+ LYVDDMLI G +  +I  +K  L  +FDMKDL     IL 
Sbjct: 988  SDPCVYFKRFSENNF-IILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILG 1047

Query: 70   IKIT--RTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNI-------GDSV 129
            +KI   RT   + + Q  YIE++L+++N   +KP  TP    +KL K +         ++
Sbjct: 1048 MKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNM 1107

Query: 130  NQFEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLEL 189
             +  Y+S V SL YA  C R +IA+ +G++ RF   P  EHW A++ ++RYL+ T    L
Sbjct: 1108 AKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL 1167

Query: 190  HYNKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA 219
             +     +L+GY+DAD      + K+++GY+F  +GGA++
Sbjct: 1168 CFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAIS 1206

[Close]

BLAST of Cmc04g0093351 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 115.2 bits (287), Expect = 9.6e-25
Identity = 69/212 (32.55%), Postives = 113/212 (53.30%), Query Frame = 0


Query: 7    VNES-DKCIYYKTEGRL--CLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLSEVD 66
            VN S D+CIY   +G +   + + LYVDD++I   ++  +N+ K  L   F M DL+E+ 
Sbjct: 1062 VNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIK 1121

Query: 67   VILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQFEY 126
              + I+I   E+ I + QS Y++KIL K+N        TP  S +       D       
Sbjct: 1122 HFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC 1181

Query: 127  ASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHYNK- 186
             S++  L Y   C R ++   + +L R++S+ + E W  ++RV+RYLK T +++L + K 
Sbjct: 1182 RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKN 1241

Query: 187  --FSAVLEGYSDADWNSLPKDSKATSGYIFNI 213
              F   + GY D+DW     D K+T+GY+F +
Sbjct: 1242 LAFENKIIGYVDSDWAGSEIDRKSTTGYLFKM 1273

[Close]

BLAST of Cmc04g0093351 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-23
Identity = 66/211 (31.28%), Postives = 111/211 (52.61%), Query Frame = 0


Query: 1    MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLS 60
            ++ GF  + SD  ++    GR  + + +YVDD+LI G++  ++      L   F +K+  
Sbjct: 1105 LTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHE 1164

Query: 61   EVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSV-N 120
            ++   L I+  R   G+ + Q  Y   +L + N   +KP  TP  +S KL  + G  + +
Sbjct: 1165 DLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPD 1224

Query: 121  QFEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELH 180
              EY  IV SL+Y     R +++Y +  L ++   P+ +HWNA++RV+RYL  T +  + 
Sbjct: 1225 PTEYRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIF 1284

Query: 181  YNKFSAV-LEGYSDADWNSLPKDSKATSGYI 210
              K + + L  YSDADW     D  +T+GYI
Sbjct: 1285 LKKGNTLSLHAYSDADWAGDTDDYVSTNGYI 1314

[Close]

BLAST of Cmc04g0093351 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-23
Identity = 69/208 (33.17%), Postives = 108/208 (51.92%), Query Frame = 0


Query: 4    GFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLSEVD 63
            GF  + SD  ++    G+  + + +YVDD+LI G++  ++++    L   F +KD  E+ 
Sbjct: 1125 GFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELH 1184

Query: 64   VILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSV-NQFE 123
              L I+  R   G+ + Q  YI  +L + N   +KP  TP   S KL    G  + +  E
Sbjct: 1185 YFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE 1244

Query: 124  YASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHYNK 183
            Y  IV SL+Y     R +I+Y +  L +F   P+ EH  A++R++RYL  T N  +   K
Sbjct: 1245 YRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 184  FSAV-LEGYSDADWNSLPKDSKATSGYI 210
             + + L  YSDADW     D  +T+GYI
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYI 1331

[Close]

BLAST of Cmc04g0093351 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.3e-18
Identity = 55/186 (29.57%), Postives = 102/186 (54.84%), Query Frame = 0


Query: 24  LIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLSEVDVILDIKITRTENGISVDQSH 83
           + + LYVDD+L+ GS+  ++N +   L + F MKDL  V   L I+I    +G+ + Q+ 
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 84  YIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQFEYASIVSSLRYATDCIRQNIAY 143
           Y E+IL      + KP  TP    +    +     +  ++ SIV +L+Y T   R +I+Y
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISY 120

Query: 144 TIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHYNKFSAV-LEGYSDADWNSLPKDS 203
            + ++C+    P+L  ++ ++RV+RY+K T    L+ +K S + ++ + D+DW       
Sbjct: 121 AVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTR 180

Query: 204 KATSGY 209
           ++T+G+
Sbjct: 181 RSTTGF 185

[Close]

BLAST of Cmc04g0093351 vs. ExPASy TrEMBL
Match: A0A5D3D4T4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00450 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.8e-103
Identity = 190/218 (87.16%), Postives = 196/218 (89.91%), Query Frame = 0


Query: 1   MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLS 60
           MSKGFKVNESDKCIYYKTEGRLC+IICLYVDDMLIFGSNLHVINDVKSML  NFDMKDL 
Sbjct: 59  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLG 118

Query: 61  EVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQ 120
           E DVIL IKITRTENGI +DQSHYIEK LKKYNYF+SKP  TPYDSSVKLFKN GDSVNQ
Sbjct: 119 EADVILGIKITRTENGIFLDQSHYIEKTLKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQ 178

Query: 121 FEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHY 180
            EYASI+ SLRYA D  R +IAY +GLLCRFTSRPSLEHWNAIERVMRYLKKTQNL LHY
Sbjct: 179 TEYASIIGSLRYAVDYTRPSIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLGLHY 238

Query: 181 NKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA 219
           NKF  VLEGYSDADWNSL  DSKATSGYIFNIAGGAVA
Sbjct: 239 NKFPVVLEGYSDADWNSLLDDSKATSGYIFNIAGGAVA 276

[Close]

BLAST of Cmc04g0093351 vs. ExPASy TrEMBL
Match: A0A5A7SNZ1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00010 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.6e-102
Identity = 188/218 (86.24%), Postives = 195/218 (89.45%), Query Frame = 0


Query: 1   MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLS 60
           MSKGFKVNESDKCIYYK EGRLC+IICLYVDDMLIFGSNLHVINDVKSML  NFDMKDL 
Sbjct: 59  MSKGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLG 118

Query: 61  EVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQ 120
           E DVIL IKITR ENGIS+DQSHYIEKILKKYNYF+SKPA TPYDSSVKLFKN GDSVNQ
Sbjct: 119 EADVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQ 178

Query: 121 FEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHY 180
            EYASI+ SLRYA DC R +IAY +GLLCRFTSRPSLEHWNAIERVMRYLKK QNL LHY
Sbjct: 179 SEYASIIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEHWNAIERVMRYLKKIQNLGLHY 238

Query: 181 NKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA 219
           NKF AVLEGY+DADWNS   DSKATSGYIFNIAG  VA
Sbjct: 239 NKFPAVLEGYNDADWNSRSDDSKATSGYIFNIAGEVVA 276

[Close]

BLAST of Cmc04g0093351 vs. ExPASy TrEMBL
Match: A0A5D3BLQ7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00040 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.0e-101
Identity = 188/218 (86.24%), Postives = 195/218 (89.45%), Query Frame = 0


Query: 1   MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLS 60
           MSKGFKVNESD+CIYYKTEGR+C+IICLYVDDMLIFGSNLH+INDVKSML ANFDMKDL 
Sbjct: 59  MSKGFKVNESDECIYYKTEGRVCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLG 118

Query: 61  EVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQ 120
           E DVIL IKI RTENGIS+DQSHYIEKILKKYNYFESKPA TPYDSSVKLFKN GDSVNQ
Sbjct: 119 EADVILGIKIARTENGISLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQ 178

Query: 121 FEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHY 180
            EYASI+ SLRYA DC R +IAYTIGLLCRFTSR SLEHWNAIERVMRYLKKTQNL LHY
Sbjct: 179 SEYASIIGSLRYAADCTRPDIAYTIGLLCRFTSRLSLEHWNAIERVMRYLKKTQNLGLHY 238

Query: 181 NKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA 219
           NKFS VLEGY DADWNSL  DSKA SGYIF I   AVA
Sbjct: 239 NKFSTVLEGYIDADWNSLSDDSKAISGYIFKITEEAVA 276

[Close]

BLAST of Cmc04g0093351 vs. ExPASy TrEMBL
Match: A0A5D3C7T6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001210 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.2e-101
Identity = 183/218 (83.94%), Postives = 198/218 (90.83%), Query Frame = 0


Query: 1   MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLS 60
           +SKGFKVNESDKCIYYKTEGRLC+IICLYVDD+LIFGSNL+VINDVKSML  NFDMK+L 
Sbjct: 106 LSKGFKVNESDKCIYYKTEGRLCIIICLYVDDILIFGSNLYVINDVKSMLSENFDMKELD 165

Query: 61  EVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQ 120
           E DVIL IKITRT+NGIS+DQSHYIEKILKKYNYF+SKP  TPYDSSVKLF+N GDSVNQ
Sbjct: 166 EADVILGIKITRTKNGISLDQSHYIEKILKKYNYFDSKPTCTPYDSSVKLFENTGDSVNQ 225

Query: 121 FEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHY 180
            EYASI+ SLRYA DC R +IAY +GLLCRFTSRPSLEHWN IER++RYLKKTQNL LHY
Sbjct: 226 SEYASIIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEHWNTIERIIRYLKKTQNLGLHY 285

Query: 181 NKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA 219
           NKF AVLEGY DADWNSL  +SKATSGYIFNIAGGAVA
Sbjct: 286 NKFPAVLEGYIDADWNSLSDNSKATSGYIFNIAGGAVA 323

[Close]

BLAST of Cmc04g0093351 vs. ExPASy TrEMBL
Match: A0A5D3DJH9 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00620 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.2e-100
Identity = 180/218 (82.57%), Postives = 194/218 (88.99%), Query Frame = 0


Query: 1   MSKGFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLS 60
           MSKGFKVNESDKC+YYKT+GRLC+IICLYVDDML F SNLHVINDVKSML  NFDMKDL 
Sbjct: 175 MSKGFKVNESDKCMYYKTKGRLCIIICLYVDDMLSFVSNLHVINDVKSMLSVNFDMKDLG 234

Query: 61  EVDVILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQ 120
           E D+IL IKITRT+NGIS+DQS+YIEKILKKYNYF+SKPA TPYDSSVKLFKN GD+VNQ
Sbjct: 235 EADIILGIKITRTKNGISLDQSYYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDNVNQ 294

Query: 121 FEYASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHY 180
            EY SI+ SLRY  DC R +IAY +GLLCRFTSRP LEHWNAIER+MRYLKKTQNL LHY
Sbjct: 295 SEYTSIIGSLRYVADCTRPDIAYAVGLLCRFTSRPCLEHWNAIERIMRYLKKTQNLGLHY 354

Query: 181 NKFSAVLEGYSDADWNSLPKDSKATSGYIFNIAGGAVA 219
           NKFS VLEGY+D DWNSL  DSKATSGYIFNIAGG VA
Sbjct: 355 NKFSTVLEGYNDVDWNSLSDDSKATSGYIFNIAGGVVA 392

[Close]

BLAST of Cmc04g0093351 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-20
Identity = 60/207 (28.99%), Postives = 107/207 (51.69%), Query Frame = 0


Query: 4   GFKVNESDKCIYYKTEGRLCLIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLSEVD 63
           GF  + SD   + K    L L + +YVDD++I  +N   ++++KS L + F ++DL  + 
Sbjct: 258 GFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLK 317

Query: 64  VILDIKITRTENGISVDQSHYIEKILKKYNYFESKPAYTPYDSSVKLFKNI-GDSVNQFE 123
             L ++I R+  GI++ Q  Y   +L +      KP+  P D SV    +  GD V+   
Sbjct: 318 YFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKA 377

Query: 124 YASIVSSLRYATDCIRQNIAYTIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHYNK 183
           Y  ++  L Y     R +I++ +  L +F+  P L H  A+ +++ Y+K T    L Y+ 
Sbjct: 378 YRRLIGRLMY-LQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 184 FSAV-LEGYSDADWNSLPKDSKATSGY 209
            + + L+ +SDA + S     ++T+GY
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGY 463

[Close]

BLAST of Cmc04g0093351 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-19
Identity = 55/186 (29.57%), Postives = 102/186 (54.84%), Query Frame = 0


Query: 24  LIICLYVDDMLIFGSNLHVINDVKSMLGANFDMKDLSEVDVILDIKITRTENGISVDQSH 83
           + + LYVDD+L+ GS+  ++N +   L + F MKDL  V   L I+I    +G+ + Q+ 
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 84  YIEKILKKYNYFESKPAYTPYDSSVKLFKNIGDSVNQFEYASIVSSLRYATDCIRQNIAY 143
           Y E+IL      + KP  TP    +    +     +  ++ SIV +L+Y T   R +I+Y
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISY 120

Query: 144 TIGLLCRFTSRPSLEHWNAIERVMRYLKKTQNLELHYNKFSAV-LEGYSDADWNSLPKDS 203
            + ++C+    P+L  ++ ++RV+RY+K T    L+ +K S + ++ + D+DW       
Sbjct: 121 AVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTR 180

Query: 204 KATSGY 209
           ++T+G+
Sbjct: 181 RSTTGF 185

The following BLAST results are available for this feature:

BLAST of Cmc04g0093351 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060459.1	3.8e-103	87.16	hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK1854...	[more]
KAA0032842.1	3.2e-102	86.24	hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK211...	[more]
TYK00058.1	2.1e-101	86.24	hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa]	[more]
TYK06419.1	4.6e-101	83.94	hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa]	[more]
KAA0058878.1	6.7e-100	82.57	putative polyprotein [Cucumis melo var. makuwa] >TYK23745.1 putative polyprotein...	[more]

BLAST of Cmc04g0093351 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.3e-33	36.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	9.6e-25	32.55	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	2.4e-23	31.28	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.0e-23	33.17	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	2.3e-18	29.57	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc04g0093351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4T4	1.8e-103	87.16	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5A7SNZ1	1.6e-102	86.24	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3BLQ7	1.0e-101	86.24	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3C7T6	2.2e-101	83.94	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3DJH9	3.2e-100	82.57	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold160...	[more]

BLAST of Cmc04g0093351 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.1e-20	28.99	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.6e-19	29.57	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..104 e-value: 4.8E-23 score: 82.0
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..210
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 24..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0093351.1	Cmc04g0093351.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding