Cmc04g0093181 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0093181
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDEAD-box ATP-dependent RNA helicase 32
LocationCMiso1.1chr04: 5255905 .. 5256787 (-)
RNA-Seq ExpressionCmc04g0093181
SyntenyCmc04g0093181
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCAAGGTAAGAGATTCTCCTACTAGACCTTCGAACTGAATTCAAGAGACCGCATGTAATTATGATTATGCATTGATGGTAGCTAAAATGCATAACTTGATGCTACTGATAATGACTGTCATTGTATTGATGTTGGTGATGATGACTGAGATTATTATGTTGATGATTGTTAATGCATGATATATTAATCACATGATTAAGGACGTTAAGATTAATACTCATGCCATGTTATGATGTTATGTTATGCTACATGCTATGGATAGGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGTGTGGTCCGACGGGACGCTAGTCTAGCATGTATATAGATATGATTCGAGTGATTCGACGGGGTCCTCGCATCCCGATTGTCTTAGTGTTACCCCCGGGTTCACTACAGACCAGCATGTCCTAGGTGCTCCCCCGGGACACCGAAGACCAGATTTTCGTTCCTACGGGAGCGCATGTTGCACGTGTTCGGGAACGTGCCAGAGATTGGGTACCATTTTCAGGACTCTAATGGGAAGTTAACAGACACCTAGCGGGACTAGTAGTAGGTCCCTTACTGAGTATATGTTTATACTCACTCTTTCTATGTTTAACATTTCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGAGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCATTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAAGTGTCTCTTGT

mRNA sequence

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCAAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGAGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCATTTTTAATGAAAATTTATTCTTCCCTCGTTTCAAAAAAGTGTCTCTTGT

Coding sequence (CDS)

ATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCAAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGAGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAA

Protein sequence

MIRIKLIGEFLLSTREYLVWLKSQGEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF
Homology
[Close]
BLAST of Cmc04g0093181 vs. NCBI nr
Match: KAA0033961.1 (DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 4.8e-13
Identity = 52/100 (52.00%), Postives = 53/100 (53.00%), Query Frame = 0 

Query: 1  MIRIKLIGEFLLSTREYLVWLKSQ------------------------------------ 59
          MIRIKLIGEFLLSTREYLVWLKS                                     
Sbjct: 1  MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]
BLAST of Cmc04g0093181 vs. NCBI nr
Match: KAA0051087.1 (transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 48/109 (44.04%), Postives = 50/109 (45.87%), Query Frame = 0 

Query: 4   IKLIGEFLLSTREYLVWLKSQ--------------------------------------- 59
           IKLIGEFLLS REY VWLKSQ                                       
Sbjct: 725 IKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRDP 784

[Close]
BLAST of Cmc04g0093181 vs. NCBI nr
Match: KAA0063966.1 (hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 18 LVWLKSQGEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF 59
          +V +  QGEGKGRGKLASDREGSVTCHM TQFCFRVYVSVF
Sbjct: 17 IVLVLPQGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 57

[Close]
BLAST of Cmc04g0093181 vs. NCBI nr
Match: KAA0059503.1 (hypothetical protein E6C27_scaffold518G00070 [Cucumis melo var. makuwa] >TYK14093.1 hypothetical protein E5676_scaffold1193G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 25 GEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF 59
          GEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF
Sbjct: 60 GEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF 93

[Close]
BLAST of Cmc04g0093181 vs. NCBI nr
Match: KAA0035872.1 (hypothetical protein E6C27_scaffold56G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.0e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 18 LVWLKSQGEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF 59
          +V +  +GEGKGRGKLASDREGSVTCHM TQFCFRVYVSVF
Sbjct: 23 IVLVLPRGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 63

[Close]
BLAST of Cmc04g0093181 vs. ExPASy TrEMBL
Match: A0A5A7SWX3 (DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00360 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 52/100 (52.00%), Postives = 53/100 (53.00%), Query Frame = 0 

Query: 1  MIRIKLIGEFLLSTREYLVWLKSQ------------------------------------ 59
          MIRIKLIGEFLLSTREYLVWLKS                                     
Sbjct: 1  MIRIKLIGEFLLSTREYLVWLKSPDQHVLGAPPGHRRPDFRSYGSACCTCSGTCQRLGTI 60

[Close]
BLAST of Cmc04g0093181 vs. ExPASy TrEMBL
Match: A0A5D3CKP0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.8e-12
Identity = 48/109 (44.04%), Postives = 50/109 (45.87%), Query Frame = 0 

Query: 4   IKLIGEFLLSTREYLVWLKSQ--------------------------------------- 59
           IKLIGEFLLS REY VWLKSQ                                       
Sbjct: 725 IKLIGEFLLSLREYFVWLKSQESYLHGCPSGSLPIQECVVRRNRQSSMDIDMIRVIRRDP 784

[Close]
BLAST of Cmc04g0093181 vs. ExPASy TrEMBL
Match: A0A5A7UUC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00060 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.3e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 25 GEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF 59
          GEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF
Sbjct: 60 GEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF 93

[Close]
BLAST of Cmc04g0093181 vs. ExPASy TrEMBL
Match: A0A5A7VC05 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001210 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.3e-11
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 18 LVWLKSQGEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF 59
          +V +  QGEGKGRGKLASDREGSVTCHM TQFCFRVYVSVF
Sbjct: 17 IVLVLPQGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 57

[Close]
BLAST of Cmc04g0093181 vs. ExPASy TrEMBL
Match: A0A5A7SXE7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00360 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 18 LVWLKSQGEGKGRGKLASDREGSVTCHMETQFCFRVYVSVF 59
          +V +  +GEGKGRGKLASDREGSVTCHM TQFCFRVYVSVF
Sbjct: 23 IVLVLPRGEGKGRGKLASDREGSVTCHMGTQFCFRVYVSVF 63

The following BLAST results are available for this feature:
BLAST of Cmc04g0093181 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033961.14.8e-1352.00DEAD-box ATP-dependent RNA helicase 32 [Cucumis melo var. makuwa] >TYK02583.1 DE... [more]
KAA0051087.12.0e-1144.04transposase [Cucumis melo var. makuwa] >TYK12105.1 transposase [Cucumis melo var... [more]
KAA0063966.11.7e-1085.37hypothetical protein E6C27_scaffold616G001210 [Cucumis melo var. makuwa][more]
KAA0059503.11.7e-10100.00hypothetical protein E6C27_scaffold518G00070 [Cucumis melo var. makuwa] >TYK1409... [more]
KAA0035872.15.0e-1082.93hypothetical protein E6C27_scaffold56G00360 [Cucumis melo var. makuwa][more]
BLAST of Cmc04g0093181 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc04g0093181 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SWX32.3e-1352.00DEAD-box ATP-dependent RNA helicase 32 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5D3CKP09.8e-1244.04Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00380 PE... [more]
A0A5A7UUC18.3e-11100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VC058.3e-1185.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SXE72.4e-1082.93Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Cmc04g0093181 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0093181.1Cmc04g0093181.1mRNA