Cmc04g0092991 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0092991
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 4982996 .. 4983490 (+)
RNA-Seq Expression	Cmc04g0092991
Synteny	Cmc04g0092991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTATTCCTATGATACCACTCCCACTCTAGTTGGATATTGTGATGCTGACTGGGCAGGTTCAGCTGATGATCGTAAAAGTACGTCTGGAGGTTGCTTCCTTTTGGGAAACAATTTAATCTCTTGTTTAAGTAAGAAGCAAAACTTTATTTCTTTATCTACAGCTGAAGCTGAATATATAGCTGCAGGTAGTGGTTATACACAATTGATTTGGATGAAAAACATGCTGCATGAATATGGCTTTGATCGGGATACTATGACGTTGTATTGTGACAGTATGAGTGCAATTGATATATCTAAAAATCTCGTTCAACATAGTCGAACTAAGCATATTGATATAAGACACCACTTTATTCGAGAACTAGTTGAAGACAAAGTAATCAAGCATGATCATATTCGTTCAAATTTACAATTAGCCGATATCTTCACTAAACCCCTGGACGCAAGCTCATTCGAATACTTACGTGCTGGTTTAGGTGTGTGTTGCACTTAA

mRNA sequence

ATGATGTATTCCTATGATACCACTCCCACTCTAGTTGGATATTGTGATGCTGACTGGGCAGGTTCAGCTGATGATCGTAAAAGTACGTCTGGAGGTTGCTTCCTTTTGGGAAACAATTTAATCTCTTGTTTAAGTAAGAAGCAAAACTTTATTTCTTTATCTACAGCTGAAGCTGAATATATAGCTGCAGGTAGTGGTTATACACAATTGATTTGGATGAAAAACATGCTGCATGAATATGGCTTTGATCGGGATACTATGACGTTGTATTGTGACAGTATGAGTGCAATTGATATATCTAAAAATCTCGTTCAACATAGTCGAACTAAGCATATTGATATAAGACACCACTTTATTCGAGAACTAGTTGAAGACAAAGTAATCAAGCATGATCATATTCGTTCAAATTTACAATTAGCCGATATCTTCACTAAACCCCTGGACGCAAGCTCATTCGAATACTTACGTGCTGGTTTAGGTGTGTGTTGCACTTAA

Coding sequence (CDS)

ATGATGTATTCCTATGATACCACTCCCACTCTAGTTGGATATTGTGATGCTGACTGGGCAGGTTCAGCTGATGATCGTAAAAGTACGTCTGGAGGTTGCTTCCTTTTGGGAAACAATTTAATCTCTTGTTTAAGTAAGAAGCAAAACTTTATTTCTTTATCTACAGCTGAAGCTGAATATATAGCTGCAGGTAGTGGTTATACACAATTGATTTGGATGAAAAACATGCTGCATGAATATGGCTTTGATCGGGATACTATGACGTTGTATTGTGACAGTATGAGTGCAATTGATATATCTAAAAATCTCGTTCAACATAGTCGAACTAAGCATATTGATATAAGACACCACTTTATTCGAGAACTAGTTGAAGACAAAGTAATCAAGCATGATCATATTCGTTCAAATTTACAATTAGCCGATATCTTCACTAAACCCCTGGACGCAAGCTCATTCGAATACTTACGTGCTGGTTTAGGTGTGTGTTGCACTTAA

Protein sequence

MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIRELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGVCCT

Homology

[Close]

BLAST of Cmc04g0092991 vs. NCBI nr
Match: KAA0055610.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 305.1 bits (780), Expect = 3.7e-79
Identity = 150/164 (91.46%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEY 60
           MMYSYDTTP LVGYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLST EAEY
Sbjct: 120 MMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEY 179

Query: 61  IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 120
           IAAGSG TQLIWMKNMLHEYGFD+DTMTLYCD+ SAIDISKN VQHSRTKHIDIRHHFIR
Sbjct: 180 IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIR 239

Query: 121 ELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGVCCT 165
           ELVEDKVIK DHIRSNLQL DIFTKPLDASSFEYLRAGLGVC T
Sbjct: 240 ELVEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCRT 283

[Close]

BLAST of Cmc04g0092991 vs. NCBI nr
Match: TYK03343.1 (uncharacterized protein E5676_scaffold206G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.5e-67
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEY 60
           MMYSYD TPTL GYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLS AEAEY
Sbjct: 97  MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 156

Query: 61  IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 120
           IAAGSG TQLIWMKNMLHEY FD+DTM LYCD+MSAIDISKNLVQHSRTK+IDIRHHFIR
Sbjct: 157 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 216

Query: 121 ELVEDKVIKHDHIRSNLQLADIFTKPL 148
           ELVEDKVIK DHIRSNLQL DIFT PL
Sbjct: 217 ELVEDKVIKLDHIRSNLQLVDIFTNPL 243

[Close]

BLAST of Cmc04g0092991 vs. NCBI nr
Match: KAA0056181.1 (uncharacterized protein E6C27_scaffold431G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.5e-67
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEY 60
           MMYSYD TPTL GYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLS AEAEY
Sbjct: 112 MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 171

Query: 61  IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 120
           IAAGSG TQLIWMKNMLHEY FD+DTM LYCD+MSAIDISKNLVQHSRTK+IDIRHHFIR
Sbjct: 172 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 231

Query: 121 ELVEDKVIKHDHIRSNLQLADIFTKPL 148
           ELVEDKVIK DHIRSNLQL DIFT PL
Sbjct: 232 ELVEDKVIKLDHIRSNLQLVDIFTNPL 258

[Close]

BLAST of Cmc04g0092991 vs. NCBI nr
Match: KAA0041593.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK19662.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-64
Identity = 130/159 (81.76%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEY 60
           MMYSYDTTPTLVGYCDADWAGSADDRK+                            EAEY
Sbjct: 212 MMYSYDTTPTLVGYCDADWAGSADDRKT----------------------------EAEY 271

Query: 61  IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 120
           IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR
Sbjct: 272 IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 331

Query: 121 ELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL 160
           ELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL
Sbjct: 332 ELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL 342

[Close]

BLAST of Cmc04g0092991 vs. NCBI nr
Match: TYK23188.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.9e-62
Identity = 123/144 (85.42%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEY 60
           MMYSYDTTPTLVGYCDADWAG ADDRKSTSGGCF LGNNLI  LSKKQN +SLST EAEY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 61  IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 120
           I AGSG TQLIWM+N+L EYGFD+ T+TLY D+MSAIDISKN VQHSR KHIDIRHHFIR
Sbjct: 296 IVAGSGCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIR 355

Query: 121 ELVEDKVIKHDHIRSNLQLADIFT 145
           ELVEDKVI+ DHIRSNLQLADIFT
Sbjct: 356 ELVEDKVIRLDHIRSNLQLADIFT 379

[Close]

BLAST of Cmc04g0092991 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.7e-32
Identity = 71/153 (46.41%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 9    PTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYT 68
            P L GY DAD AG  D+RKS++G  F      IS  SK Q  ++LST EAEYIAA     
Sbjct: 1173 PILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGK 1232

Query: 69   QLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIRELVEDKVI 128
            ++IW+K  L E G  +    +YCDS SAID+SKN + H+RTKHID+R+H+IRE+V+D+ +
Sbjct: 1233 EMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESL 1292

Query: 129  KHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV 162
            K   I +N   AD+ TK +  + FE  +  +G+
Sbjct: 1293 KVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc04g0092991 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-26
Identity = 66/153 (43.14%), Postives = 95/153 (62.09%), Query Frame = 0


Query: 11   LVGYCDADWAGSADDRKSTSGGCF-LLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQ 70
            ++GY D+DWAGS  DRKST+G  F +   NLI   +K+QN ++ S+ EAEY+A      +
Sbjct: 1248 IIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVRE 1307

Query: 71   LIWMKNMLHEYGFD-RDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIRELVEDKVI 130
             +W+K +L        + + +Y D+   I I+ N   H R KHIDI++HF RE V++ VI
Sbjct: 1308 ALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVI 1367

Query: 131  KHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV 162
              ++I +  QLADIFTKPL A+ F  LR  LG+
Sbjct: 1368 CLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc04g0092991 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.7e-23
Identity = 61/155 (39.35%), Postives = 91/155 (58.71%), Query Frame = 0


Query: 8    TPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGY 67
            T +L  Y DADWAG  DD  ST+G    LG++ IS  SKKQ  +  S+ EAEY +  +  
Sbjct: 1306 TLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTS 1365

Query: 68   TQLIWMKNMLHEYGFD-RDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIRELVEDK 127
            +++ W+ ++L E G        +YCD++ A  +  N V HSR KHI I +HFIR  V+  
Sbjct: 1366 SEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSG 1425

Query: 128  VIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV 162
             ++  H+ ++ QLAD  TKPL  ++F+   + +GV
Sbjct: 1426 ALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460

[Close]

BLAST of Cmc04g0092991 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.8e-23
Identity = 61/155 (39.35%), Postives = 89/155 (57.42%), Query Frame = 0


Query: 8    TPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGY 67
            T +L  Y DADWAG  DD  ST+G    LG++ IS  SKKQ  +  S+ EAEY +  +  
Sbjct: 1289 TLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTS 1348

Query: 68   TQLIWMKNMLHEYGFD-RDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIRELVEDK 127
            ++L W+ ++L E G        +YCD++ A  +  N V HSR KHI + +HFIR  V+  
Sbjct: 1349 SELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSG 1408

Query: 128  VIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGV 162
             ++  H+ ++ QLAD  TKPL   +F+     +GV
Sbjct: 1409 ALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc04g0092991 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 8   TPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGY 67
           T  LVGY DADWAG  + R+STSG  F L    +S  SKKQ  ++LS+ E EY+A     
Sbjct: 68  TAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEAT 127

Query: 68  TQLIWM 74
            + +W+
Sbjct: 128 QEAVWL 133

[Close]

BLAST of Cmc04g0092991 vs. ExPASy TrEMBL
Match: A0A5D3DLL1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00150 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-79
Identity = 150/164 (91.46%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEY 60
           MMYSYDTTP LVGYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLST EAEY
Sbjct: 120 MMYSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEY 179

Query: 61  IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 120
           IAAGSG TQLIWMKNMLHEYGFD+DTMTLYCD+ SAIDISKN VQHSRTKHIDIRHHFIR
Sbjct: 180 IAAGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIR 239

Query: 121 ELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGLGVCCT 165
           ELVEDKVIK DHIRSNLQL DIFTKPLDASSFEYLRAGLGVC T
Sbjct: 240 ELVEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCRT 283

[Close]

BLAST of Cmc04g0092991 vs. ExPASy TrEMBL
Match: A0A5A7URM6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00070 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEY 60
           MMYSYD TPTL GYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLS AEAEY
Sbjct: 112 MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 171

Query: 61  IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 120
           IAAGSG TQLIWMKNMLHEY FD+DTM LYCD+MSAIDISKNLVQHSRTK+IDIRHHFIR
Sbjct: 172 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 231

Query: 121 ELVEDKVIKHDHIRSNLQLADIFTKPL 148
           ELVEDKVIK DHIRSNLQL DIFT PL
Sbjct: 232 ELVEDKVIKLDHIRSNLQLVDIFTNPL 258

[Close]

BLAST of Cmc04g0092991 vs. ExPASy TrEMBL
Match: A0A5D3BUJ1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold206G00060 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 131/147 (89.12%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEY 60
           MMYSYD TPTL GYCDADWAGSADDRKSTSGGCF LGNNLIS LSKKQN +SLS AEAEY
Sbjct: 97  MMYSYDITPTLFGYCDADWAGSADDRKSTSGGCFFLGNNLISSLSKKQNRVSLSIAEAEY 156

Query: 61  IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 120
           IAAGSG TQLIWMKNMLHEY FD+DTM LYCD+MSAIDISKNLVQHSRTK+IDIRHHFIR
Sbjct: 157 IAAGSGCTQLIWMKNMLHEYCFDQDTMRLYCDNMSAIDISKNLVQHSRTKNIDIRHHFIR 216

Query: 121 ELVEDKVIKHDHIRSNLQLADIFTKPL 148
           ELVEDKVIK DHIRSNLQL DIFT PL
Sbjct: 217 ELVEDKVIKLDHIRSNLQLVDIFTNPL 243

[Close]

BLAST of Cmc04g0092991 vs. ExPASy TrEMBL
Match: A0A5D3D7Z9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00540 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.7e-65
Identity = 130/159 (81.76%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEY 60
           MMYSYDTTPTLVGYCDADWAGSADDRK+                            EAEY
Sbjct: 212 MMYSYDTTPTLVGYCDADWAGSADDRKT----------------------------EAEY 271

Query: 61  IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 120
           IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR
Sbjct: 272 IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 331

Query: 121 ELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL 160
           ELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL
Sbjct: 332 ELVEDKVIKHDHIRSNLQLADIFTKPLDASSFEYLRAGL 342

[Close]

BLAST of Cmc04g0092991 vs. ExPASy TrEMBL
Match: A0A5D3DI97 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002180 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 9.0e-63
Identity = 123/144 (85.42%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEY 60
           MMYSYDTTPTLVGYCDADWAG ADDRKSTSGGCF LGNNLI  LSKKQN +SLST EAEY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 61  IAAGSGYTQLIWMKNMLHEYGFDRDTMTLYCDSMSAIDISKNLVQHSRTKHIDIRHHFIR 120
           I AGSG TQLIWM+N+L EYGFD+ T+TLY D+MSAIDISKN VQHSR KHIDIRHHFIR
Sbjct: 296 IVAGSGCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIR 355

Query: 121 ELVEDKVIKHDHIRSNLQLADIFT 145
           ELVEDKVI+ DHIRSNLQLADIFT
Sbjct: 356 ELVEDKVIRLDHIRSNLQLADIFT 379

[Close]

BLAST of Cmc04g0092991 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 85.1 bits (209), Expect = 5.7e-17
Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 1   MMYSYDTTPTLVGYCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEY 60
           + YS      L  + DA +    D R+ST+G C  LG +LIS  SKKQ  +S S+AEAEY
Sbjct: 432 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 491

Query: 61  IAAGSGYTQLIWMKNMLHEYGFDRDTMT-LYCDSMSAIDISKNLVQHSRTKHIDIRHHFI 120
            A      +++W+     E        T L+CD+ +AI I+ N V H RTKHI+   H +
Sbjct: 492 RALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSV 551

Query: 121 RE 122
           RE
Sbjct: 552 RE 553

[Close]

BLAST of Cmc04g0092991 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-08
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 14  YCDADWAGSADDRKSTSGGCFLLGNNLISCLSKKQNFISLSTAEAEYIAAGSGYTQLIW 73
           +CD+DWAG    R+ST+G C  LG N+IS  +K+Q  +S S+ E EY A      +L W
Sbjct: 167 FCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

The following BLAST results are available for this feature:

BLAST of Cmc04g0092991 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055610.1	3.7e-79	91.46	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [...	[more]
TYK03343.1	2.5e-67	89.12	uncharacterized protein E5676_scaffold206G00060 [Cucumis melo var. makuwa]	[more]
KAA0056181.1	2.5e-67	89.12	uncharacterized protein E6C27_scaffold431G00070 [Cucumis melo var. makuwa]	[more]
KAA0041593.1	1.2e-64	81.76	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK19662.1 putative m...	[more]
TYK23188.1	1.9e-62	85.42	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0092991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.7e-32	46.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.9e-26	43.14	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	6.7e-23	39.35	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	8.8e-23	39.35	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0CV72	1.1e-09	45.45	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc04g0092991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLL1	1.8e-79	91.46	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G...	[more]
A0A5A7URM6	1.2e-67	89.12	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3BUJ1	1.2e-67	89.12	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3D7Z9	5.7e-65	81.76	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3DI97	9.0e-63	85.42	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]

BLAST of Cmc04g0092991 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.7e-17	39.34	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.8e-08	44.07	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 43..161
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 43..161
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 12..147 e-value: 1.52639E-74 score: 217.721

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0092991.1	Cmc04g0092991.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0052923	all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding