Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCTTCTTCAATAGTAATTGGCAATTGTTTGATAGATGATTTTAGATTCATGTCTACGGATCGTTCCATTCCTAAAGAGATTGTGTATAAGACTCGTACAAAACTTGGAGTTAATATAAGTTACCAGAAAGCTTGGAGGGTAAAAGAGCATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCATTGATTCCAAGATTCTTTAATAAATTGGTTGAATCTAACCCAGGTATGATCAATTTTTTATATCAAATTTTTATTGATTTGCACATAGATGTGGATAAACTAATATCACAGTCTATCTAGATAGACTAATATTGACATCTTTGATATTCTTTCTGTTATTTTTTGTTTGTGCTGATAGAAATGTGTTTTTAATTATTATAGGTACATGCACTGCTTTAGAAATGGATGATAGTGGTCATTTCAAGTTTTGTTTTATGGCTTTTGGTGCATCAATTGAGGAGTGGAAATATTGTAGACCTATTATTTTTGTTAATGGGACATTTTTGAAGTGTAAGTTTGGTGGCATTCTATTAACAGCTTCATCACAAGATGGTAACAATAAAATCTTCCCTCTTGCTTTTGCCATTGTAGATTATGAAAATGATGTATCATGGACATGGTTTTTTTAA
mRNA sequence
ATGCAAGCTTCTTCAATAGTAATTGGCAATTGTTTGATAGATGATTTTAGATTCATGTCTACGGATCGTTCCATTCCTAAAGAGATTGTGTATAAGACTCGTACAAAACTTGGAGTTAATATAAGTTACCAGAAAGCTTGGAGGGTAAAAGAGCATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCATTGATTCCAAGATTCTTTAATAAATTGGTTGAATCTAACCCAGGTACATGCACTGCTTTAGAAATGGATGATAGTGGTCATTTCAAGTTTTGTTTTATGGCTTTTGGTGCATCAATTGAGGAGTGGAAATATTGTAGACCTATTATTTTTGTTAATGGGACATTTTTGAAGTGTAAGTTTGGTGGCATTCTATTAACAGCTTCATCACAAGATGGTAACAATAAAATCTTCCCTCTTGCTTTTGCCATTGTAGATTATGAAAATGATGTATCATGGACATGGTTTTTTTAA
Coding sequence (CDS)
ATGCAAGCTTCTTCAATAGTAATTGGCAATTGTTTGATAGATGATTTTAGATTCATGTCTACGGATCGTTCCATTCCTAAAGAGATTGTGTATAAGACTCGTACAAAACTTGGAGTTAATATAAGTTACCAGAAAGCTTGGAGGGTAAAAGAGCATATGGTAAAGATATTACATGGTGACACAGTTGAATCGTATGCATTGATTCCAAGATTCTTTAATAAATTGGTTGAATCTAACCCAGGTACATGCACTGCTTTAGAAATGGATGATAGTGGTCATTTCAAGTTTTGTTTTATGGCTTTTGGTGCATCAATTGAGGAGTGGAAATATTGTAGACCTATTATTTTTGTTAATGGGACATTTTTGAAGTGTAAGTTTGGTGGCATTCTATTAACAGCTTCATCACAAGATGGTAACAATAAAATCTTCCCTCTTGCTTTTGCCATTGTAGATTATGAAAATGATGTATCATGGACATGGTTTTTTTAA
Protein sequence
MQASSIVIGNCLIDDFRFMSTDRSIPKEIVYKTRTKLGVNISYQKAWRVKEHMVKILHGDTVESYALIPRFFNKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEEWKYCRPIIFVNGTFLKCKFGGILLTASSQDGNNKIFPLAFAIVDYENDVSWTWFF
Homology
BLAST of Cmc04g0092581 vs. NCBI nr
Match:
KAA0036500.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa] >TYJ99981.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])
HSP 1 Score: 304.3 bits (778), Expect = 6.3e-79
Identity = 144/162 (88.89%), Postives = 151/162 (93.21%), Query Frame = 0
Query: 1 MQASSIVIGNCLIDDFRFMSTDRSIPKEIVYKTRTKLGVNISYQKAWRVKEHMVKILHGD 60
MQASS VI NCLIDDFRFMSTD SIPKEI +KTRT LGVNISYQKAWR+KEHMVKILHGD
Sbjct: 1 MQASSTVIDNCLIDDFRFMSTDPSIPKEIEHKTRTNLGVNISYQKAWRLKEHMVKILHGD 60
Query: 61 TVESYALIPRFFNKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEEWKYCRPIIFVNGT 120
TVESYALI RFF+KLV+SNPGTCTALEMDDSGHFKFCFMAFGASIE WKYC PII ++GT
Sbjct: 61 TVESYALISRFFDKLVKSNPGTCTALEMDDSGHFKFCFMAFGASIERWKYCIPIISIDGT 120
Query: 121 FLKCKFGGILLTASSQDGNNKIFPLAFAIVDYENDVSWTWFF 163
FLKCKFG ILLTASSQDGNN+IFPLAFAIVD ENDVSWTWFF
Sbjct: 121 FLKCKFGDILLTASSQDGNNQIFPLAFAIVDSENDVSWTWFF 162
BLAST of Cmc04g0092581 vs. NCBI nr
Match:
KAA0035384.1 (protein FAR-RED IMPAIRED RESPONSE 1-like [Cucumis melo var. makuwa] >TYK03496.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 302.4 bits (773), Expect = 2.4e-78
Identity = 143/162 (88.27%), Postives = 148/162 (91.36%), Query Frame = 0
Query: 1 MQASSIVIGNCLIDDFRFMSTDRSIPKEIVYKTRTKLGVNISYQKAWRVKEHMVKILHGD 60
MQASS VIGNCLI DFRFMSTDRSIPKEIV+K T LGVNISYQKAWRVKEHMVKILH D
Sbjct: 1 MQASSTVIGNCLIYDFRFMSTDRSIPKEIVHKAHTNLGVNISYQKAWRVKEHMVKILHDD 60
Query: 61 TVESYALIPRFFNKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEEWKYCRPIIFVNGT 120
VESYALIPRFF+KLVESNP TCTALEMDDSGHFKFCFMAFGASIE WKYCR II V+GT
Sbjct: 61 KVESYALIPRFFDKLVESNPSTCTALEMDDSGHFKFCFMAFGASIEGWKYCRTIISVDGT 120
Query: 121 FLKCKFGGILLTASSQDGNNKIFPLAFAIVDYENDVSWTWFF 163
FLKCKFGGILL ASSQDGNN+IFPLAF IVD+END SWTWFF
Sbjct: 121 FLKCKFGGILLAASSQDGNNQIFPLAFVIVDFENDASWTWFF 162
BLAST of Cmc04g0092581 vs. NCBI nr
Match:
TYK02872.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])
HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 140/159 (88.05%), Postives = 149/159 (93.71%), Query Frame = 0
Query: 1 MQASSIVIGNCLIDDFRFMSTDRSIPKEIVYKTRTKLGVNISYQKAWRVKEHMVKILHGD 60
MQASS VI NCLIDDFRFMST+RSIP EIV+K RT LG+NISYQKAWR KEHMVKILHGD
Sbjct: 1 MQASSTVIDNCLIDDFRFMSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGD 60
Query: 61 TVESYALIPRFFNKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEEWKYCRPIIFVNGT 120
TVESYALIPRFF+KLVESNPGTCTALEMDDSGHFKFCFMAFGASIE WKYC+PII+V+G
Sbjct: 61 TVESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGK 120
Query: 121 FLKCKFGGILLTASSQDGNNKIFPLAFAIVDYENDVSWT 160
FLKCKFGGILLTASSQDGNN+IFPLAF IVD +NDVSWT
Sbjct: 121 FLKCKFGGILLTASSQDGNNQIFPLAFTIVDSKNDVSWT 159
BLAST of Cmc04g0092581 vs. NCBI nr
Match:
KAA0047748.1 (uncharacterized protein E6C27_scaffold1059G00070 [Cucumis melo var. makuwa] >TYK02382.1 uncharacterized protein E5676_scaffold155G00850 [Cucumis melo var. makuwa])
HSP 1 Score: 279.3 bits (713), Expect = 2.2e-71
Identity = 131/149 (87.92%), Postives = 136/149 (91.28%), Query Frame = 0
Query: 14 DDFRFMSTDRSIPKEIVYKTRTKLGVNISYQKAWRVKEHMVKILHGDTVESYALIPRFFN 73
DDFRFMSTDRSIPKEIV+K T LGVN SYQKAWR KEHMVKILHGDTVE YALIPRFF+
Sbjct: 130 DDFRFMSTDRSIPKEIVHKACTNLGVNTSYQKAWRAKEHMVKILHGDTVELYALIPRFFD 189
Query: 74 KLVESNPGTCTALEMDDSGHFKFCFMAFGASIEEWKYCRPIIFVNGTFLKCKFGGILLTA 133
KLVESNPGTCTALEMDD+GHFKFCFM FGASIE WKYCRPII V+ TFLKCKFGGI LTA
Sbjct: 190 KLVESNPGTCTALEMDDNGHFKFCFMDFGASIEGWKYCRPIISVDRTFLKCKFGGIRLTA 249
Query: 134 SSQDGNNKIFPLAFAIVDYENDVSWTWFF 163
SSQDGNN+IFPLAFAIVD END SWTWFF
Sbjct: 250 SSQDGNNQIFPLAFAIVDSENDASWTWFF 278
BLAST of Cmc04g0092581 vs. NCBI nr
Match:
TYJ95626.1 (uncharacterized protein E5676_scaffold104G00450 [Cucumis melo var. makuwa])
HSP 1 Score: 277.3 bits (708), Expect = 8.3e-71
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 0
Query: 1 MQASSIVIGNCLIDDFRFMSTDRSIPKEIVYKTRTKLGVNISYQKAWRVKEHMVKILHGD 60
MQA+S VIGNCLIDDFRFMS D SIPKEIV+K RT LGVNISY+KAWR KEHMVKILHGD
Sbjct: 21 MQAASTVIGNCLIDDFRFMSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGD 80
Query: 61 TVESYALIPRFFNKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEEWKYCRPIIFVNGT 120
TVESYALIPRFF+KLV+SNP TCTALEMDDSGHFKFCFMAFGASIE WKYCRPII V+GT
Sbjct: 81 TVESYALIPRFFDKLVKSNPCTCTALEMDDSGHFKFCFMAFGASIEGWKYCRPIISVDGT 140
Query: 121 FLKCKFGGILLTASSQDGNNKIFPLAFAI 150
FLKCKFGGILLTASSQD NN+IFPLAFAI
Sbjct: 141 FLKCKFGGILLTASSQDDNNQIFPLAFAI 169
BLAST of Cmc04g0092581 vs. ExPASy TrEMBL
Match:
A0A5D3BMN4 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00260 PE=4 SV=1)
HSP 1 Score: 304.3 bits (778), Expect = 3.1e-79
Identity = 144/162 (88.89%), Postives = 151/162 (93.21%), Query Frame = 0
Query: 1 MQASSIVIGNCLIDDFRFMSTDRSIPKEIVYKTRTKLGVNISYQKAWRVKEHMVKILHGD 60
MQASS VI NCLIDDFRFMSTD SIPKEI +KTRT LGVNISYQKAWR+KEHMVKILHGD
Sbjct: 1 MQASSTVIDNCLIDDFRFMSTDPSIPKEIEHKTRTNLGVNISYQKAWRLKEHMVKILHGD 60
Query: 61 TVESYALIPRFFNKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEEWKYCRPIIFVNGT 120
TVESYALI RFF+KLV+SNPGTCTALEMDDSGHFKFCFMAFGASIE WKYC PII ++GT
Sbjct: 61 TVESYALISRFFDKLVKSNPGTCTALEMDDSGHFKFCFMAFGASIERWKYCIPIISIDGT 120
Query: 121 FLKCKFGGILLTASSQDGNNKIFPLAFAIVDYENDVSWTWFF 163
FLKCKFG ILLTASSQDGNN+IFPLAFAIVD ENDVSWTWFF
Sbjct: 121 FLKCKFGDILLTASSQDGNNQIFPLAFAIVDSENDVSWTWFF 162
BLAST of Cmc04g0092581 vs. ExPASy TrEMBL
Match:
A0A5D3BZ76 (Protein FAR-RED IMPAIRED RESPONSE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001160 PE=4 SV=1)
HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 143/162 (88.27%), Postives = 148/162 (91.36%), Query Frame = 0
Query: 1 MQASSIVIGNCLIDDFRFMSTDRSIPKEIVYKTRTKLGVNISYQKAWRVKEHMVKILHGD 60
MQASS VIGNCLI DFRFMSTDRSIPKEIV+K T LGVNISYQKAWRVKEHMVKILH D
Sbjct: 1 MQASSTVIGNCLIYDFRFMSTDRSIPKEIVHKAHTNLGVNISYQKAWRVKEHMVKILHDD 60
Query: 61 TVESYALIPRFFNKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEEWKYCRPIIFVNGT 120
VESYALIPRFF+KLVESNP TCTALEMDDSGHFKFCFMAFGASIE WKYCR II V+GT
Sbjct: 61 KVESYALIPRFFDKLVESNPSTCTALEMDDSGHFKFCFMAFGASIEGWKYCRTIISVDGT 120
Query: 121 FLKCKFGGILLTASSQDGNNKIFPLAFAIVDYENDVSWTWFF 163
FLKCKFGGILL ASSQDGNN+IFPLAF IVD+END SWTWFF
Sbjct: 121 FLKCKFGGILLAASSQDGNNQIFPLAFVIVDFENDASWTWFF 162
BLAST of Cmc04g0092581 vs. ExPASy TrEMBL
Match:
A0A5D3BVN2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00010 PE=4 SV=1)
HSP 1 Score: 300.1 bits (767), Expect = 5.8e-78
Identity = 140/159 (88.05%), Postives = 149/159 (93.71%), Query Frame = 0
Query: 1 MQASSIVIGNCLIDDFRFMSTDRSIPKEIVYKTRTKLGVNISYQKAWRVKEHMVKILHGD 60
MQASS VI NCLIDDFRFMST+RSIP EIV+K RT LG+NISYQKAWR KEHMVKILHGD
Sbjct: 1 MQASSTVIDNCLIDDFRFMSTNRSIPDEIVHKARTNLGINISYQKAWRAKEHMVKILHGD 60
Query: 61 TVESYALIPRFFNKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEEWKYCRPIIFVNGT 120
TVESYALIPRFF+KLVESNPGTCTALEMDDSGHFKFCFMAFGASIE WKYC+PII+V+G
Sbjct: 61 TVESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGK 120
Query: 121 FLKCKFGGILLTASSQDGNNKIFPLAFAIVDYENDVSWT 160
FLKCKFGGILLTASSQDGNN+IFPLAF IVD +NDVSWT
Sbjct: 121 FLKCKFGGILLTASSQDGNNQIFPLAFTIVDSKNDVSWT 159
BLAST of Cmc04g0092581 vs. ExPASy TrEMBL
Match:
A0A5D3BUA2 (MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00850 PE=4 SV=1)
HSP 1 Score: 279.3 bits (713), Expect = 1.1e-71
Identity = 131/149 (87.92%), Postives = 136/149 (91.28%), Query Frame = 0
Query: 14 DDFRFMSTDRSIPKEIVYKTRTKLGVNISYQKAWRVKEHMVKILHGDTVESYALIPRFFN 73
DDFRFMSTDRSIPKEIV+K T LGVN SYQKAWR KEHMVKILHGDTVE YALIPRFF+
Sbjct: 130 DDFRFMSTDRSIPKEIVHKACTNLGVNTSYQKAWRAKEHMVKILHGDTVELYALIPRFFD 189
Query: 74 KLVESNPGTCTALEMDDSGHFKFCFMAFGASIEEWKYCRPIIFVNGTFLKCKFGGILLTA 133
KLVESNPGTCTALEMDD+GHFKFCFM FGASIE WKYCRPII V+ TFLKCKFGGI LTA
Sbjct: 190 KLVESNPGTCTALEMDDNGHFKFCFMDFGASIEGWKYCRPIISVDRTFLKCKFGGIRLTA 249
Query: 134 SSQDGNNKIFPLAFAIVDYENDVSWTWFF 163
SSQDGNN+IFPLAFAIVD END SWTWFF
Sbjct: 250 SSQDGNNQIFPLAFAIVDSENDASWTWFF 278
BLAST of Cmc04g0092581 vs. ExPASy TrEMBL
Match:
A0A5D3B9S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00450 PE=4 SV=1)
HSP 1 Score: 277.3 bits (708), Expect = 4.0e-71
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 0
Query: 1 MQASSIVIGNCLIDDFRFMSTDRSIPKEIVYKTRTKLGVNISYQKAWRVKEHMVKILHGD 60
MQA+S VIGNCLIDDFRFMS D SIPKEIV+K RT LGVNISY+KAWR KEHMVKILHGD
Sbjct: 21 MQAASTVIGNCLIDDFRFMSIDCSIPKEIVHKARTNLGVNISYEKAWRAKEHMVKILHGD 80
Query: 61 TVESYALIPRFFNKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEEWKYCRPIIFVNGT 120
TVESYALIPRFF+KLV+SNP TCTALEMDDSGHFKFCFMAFGASIE WKYCRPII V+GT
Sbjct: 81 TVESYALIPRFFDKLVKSNPCTCTALEMDDSGHFKFCFMAFGASIEGWKYCRPIISVDGT 140
Query: 121 FLKCKFGGILLTASSQDGNNKIFPLAFAI 150
FLKCKFGGILLTASSQD NN+IFPLAFAI
Sbjct: 141 FLKCKFGGILLTASSQDDNNQIFPLAFAI 169
BLAST of Cmc04g0092581 vs. TAIR 10
Match:
AT1G64260.1 (MuDR family transposase )
HSP 1 Score: 75.1 bits (183), Expect = 5.8e-14
Identity = 44/134 (32.84%), Postives = 67/134 (50.00%), Query Frame = 0
Query: 34 RTKLGVNISYQKAWRVKEHMVKILHGDTVESYALIPRFFNKLVESNPGTCTALEMD---- 93
+ K G + K K ++K + GD +S+ ++P+ + SN G + D
Sbjct: 294 KEKTGYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPKLISAFHSSN-GLLVDWQYDLFPN 353
Query: 94 -DSGHFKFCFMAFGASIEEWKYCRPIIFVNGTFLKCKFGGILLTASSQDGNNKIFPLAFA 153
D F+ F +F SIE +++CRP+I V+ L K+ L+ AS D NK FPLAFA
Sbjct: 354 PDFASFRGVFWSFSQSIEGFQHCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFA 413
Query: 154 IVDYENDVSWTWFF 163
+ + SW WFF
Sbjct: 414 VTKEVSTDSWRWFF 426
BLAST of Cmc04g0092581 vs. TAIR 10
Match:
AT1G49920.1 (MuDR family transposase )
HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 42/118 (35.59%), Postives = 61/118 (51.69%), Query Frame = 0
Query: 50 KEHMVKILHGDTVESYALIPRFFNKLVESNPGTCTALEMDDSGH------FKFCFMAFGA 109
K +K GD +S+ LIP+ + L SN G + D H F+ F AF
Sbjct: 312 KVKAIKRFFGDWDQSFRLIPKLMSVLHSSN-GLLVDWQYDSLTHDPEHASFRGLFWAFSQ 371
Query: 110 SIEEWKYCRPIIFVNGTFLKCKFGGILLTASSQDGNNKIFPLAFAIVDYENDVSWTWF 162
SI+ +++CRP+I V+ L K+ L+ AS+ D N+ FPLAFA+ + SW WF
Sbjct: 372 SIQGFQHCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKEVSVDSWRWF 428
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0036500.1 | 6.3e-79 | 88.89 | protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa] >TYJ99981.1 protein F... | [more] |
KAA0035384.1 | 2.4e-78 | 88.27 | protein FAR-RED IMPAIRED RESPONSE 1-like [Cucumis melo var. makuwa] >TYK03496.1 ... | [more] |
TYK02872.1 | 1.2e-77 | 88.05 | protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa] | [more] |
KAA0047748.1 | 2.2e-71 | 87.92 | uncharacterized protein E6C27_scaffold1059G00070 [Cucumis melo var. makuwa] >TYK... | [more] |
TYJ95626.1 | 8.3e-71 | 88.59 | uncharacterized protein E5676_scaffold104G00450 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BMN4 | 3.1e-79 | 88.89 | Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5D3BZ76 | 1.2e-78 | 88.27 | Protein FAR-RED IMPAIRED RESPONSE 1-like OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5D3BVN2 | 5.8e-78 | 88.05 | Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5D3BUA2 | 1.1e-71 | 87.92 | MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A5D3B9S0 | 4.0e-71 | 88.59 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |