Cmc04g0092551 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0092551
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr04: 4532779 .. 4533018 (+)
RNA-Seq Expression	Cmc04g0092551
Synteny	Cmc04g0092551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAATGATAGATCGATGCGCCTTTGCATTGATTACAGAGAGTTGAATAAGGTGACAGTCAAGAATCGCTATCCATTGCCCAGGATTGATGACTTGTTTGATCAGTTGCAAGGAGCCACTATTTTCTCTAAGATCGATTTACATTCAAGCTATCACCAGTTGAGGATTAGAGACAGTGACATTCCTAAGACTGCTTTTGTCACACCCCGATCTAAGTTTTCCCCTCTAACCTAG

mRNA sequence

ATGAAGAAGAATGATAGATCGATGCGCCTTTGCATTGATTACAGAGAGTTGAATAAGGTGACAGTCAAGAATCGCTATCCATTGCCCAGGATTGATGACTTGTTTGATCAGTTGCAAGGAGCCACTATTTTCTCTAAGATCGATTTACATTCAAGCTATCACCAGTTGAGGATTAGAGACAGTGACATTCCTAAGACTGCTTTTGTCACACCCCGATCTAAGTTTTCCCCTCTAACCTAG

Coding sequence (CDS)

ATGAAGAAGAATGATAGATCGATGCGCCTTTGCATTGATTACAGAGAGTTGAATAAGGTGACAGTCAAGAATCGCTATCCATTGCCCAGGATTGATGACTTGTTTGATCAGTTGCAAGGAGCCACTATTTTCTCTAAGATCGATTTACATTCAAGCTATCACCAGTTGAGGATTAGAGACAGTGACATTCCTAAGACTGCTTTTGTCACACCCCGATCTAAGTTTTCCCCTCTAACCTAG

Protein sequence

MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKTAFVTPRSKFSPLT

Homology

[Close]

BLAST of Cmc04g0092551 vs. NCBI nr
Match: KAA0063198.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYK23495.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 1.6e-35
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRD 60
           +KKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDL SSYHQLRIRD
Sbjct: 412 LKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIRD 471

Query: 61  SDIPKTAFVTPRSKFSPLT 80
           SDIPKTAFVTPRSKFSPLT
Sbjct: 472 SDIPKTAFVTPRSKFSPLT 490

[Close]

BLAST of Cmc04g0092551 vs. NCBI nr
Match: KAA0061127.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1   MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRD 60
           +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDL SSYHQLRIRD
Sbjct: 109 VKKKDESMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRD 168

Query: 61  SDIPKTAF 69
           SDIPKTAF
Sbjct: 169 SDIPKTAF 176

[Close]

BLAST of Cmc04g0092551 vs. NCBI nr
Match: TYK03797.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1   MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRD 60
           +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDL SSYHQLRIRD
Sbjct: 109 VKKKDESMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRD 168

Query: 61  SDIPKTAF 69
           SDIPKTAF
Sbjct: 169 SDIPKTAF 176

[Close]

BLAST of Cmc04g0092551 vs. NCBI nr
Match: KAA0049632.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK15992.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 3.6e-27
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1   MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRD 60
           MKKND SMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGAT+FSKIDL S YHQLRIRD
Sbjct: 348 MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 407

Query: 61  SDIPKTAF 69
           SDIPKTAF
Sbjct: 408 SDIPKTAF 415

[Close]

BLAST of Cmc04g0092551 vs. NCBI nr
Match: TYK09586.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 4.7e-27
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1   MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRD 60
           +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDL SSYHQLRIR+
Sbjct: 241 VKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIRE 300

Query: 61  SDIPKTAF 69
           SDIPKTAF
Sbjct: 301 SDIPKTAF 308

[Close]

BLAST of Cmc04g0092551 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 9.1e-18
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 7  SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSDIPKT 66
          S+R+CIDYR L KVT+KN+YP+PR+DDLFD+L  AT F+K+DL S Y Q+RI   D PKT
Sbjct: 5  SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 67 AFVTPRSKF 76
            VT    F
Sbjct: 65 TCVTRYGSF 73

[Close]

BLAST of Cmc04g0092551 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 87.4 bits (215), Expect = 7.7e-17
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 3   KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSD 62
           K D + RLC+DYR LNK T+ + +PLPRID+L  ++  A IF+ +DLHS YHQ+ +   D
Sbjct: 641 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 700

Query: 63  IPKTAFVTPRSKF 76
             KTAFVTP  K+
Sbjct: 701 RYKTAFVTPSGKY 713

[Close]

BLAST of Cmc04g0092551 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 7.7e-17
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 3   KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSD 62
           K D + RLC+DYR LNK T+ + +PLPRID+L  ++  A IF+ +DLHS YHQ+ +   D
Sbjct: 667 KKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKD 726

Query: 63  IPKTAFVTPRSKF 76
             KTAFVTP  K+
Sbjct: 727 RYKTAFVTPSGKY 739

[Close]

BLAST of Cmc04g0092551 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-13
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 3   KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSD 62
           K + ++R+ +DY+ LNK    N YPLP I+ L  ++QG+TIF+K+DL S+YH +R+R  D
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516

Query: 63  IPKTAFVTPRSKFSPL 79
             K AF  PR  F  L
Sbjct: 517 EHKLAFRCPRGVFEYL 532

[Close]

BLAST of Cmc04g0092551 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-13
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 3   KNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRDSD 62
           K + ++R+ +DY+ LNK    N YPLP I+ L  ++QG+TIF+K+DL S+YH +R+R  D
Sbjct: 457 KKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGD 516

Query: 63  IPKTAFVTPRSKFSPL 79
             K AF  PR  F  L
Sbjct: 517 EHKLAFRCPRGVFEYL 532

[Close]

BLAST of Cmc04g0092551 vs. ExPASy TrEMBL
Match: A0A5A7V6F2 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2774G00120 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.7e-36
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRD 60
           +KKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDL SSYHQLRIRD
Sbjct: 412 LKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIRD 471

Query: 61  SDIPKTAFVTPRSKFSPLT 80
           SDIPKTAFVTPRSKFSPLT
Sbjct: 472 SDIPKTAFVTPRSKFSPLT 490

[Close]

BLAST of Cmc04g0092551 vs. ExPASy TrEMBL
Match: A0A5A7V2M6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold348G00430 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.9e-28
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1   MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRD 60
           +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDL SSYHQLRIRD
Sbjct: 109 VKKKDESMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRD 168

Query: 61  SDIPKTAF 69
           SDIPKTAF
Sbjct: 169 SDIPKTAF 176

[Close]

BLAST of Cmc04g0092551 vs. ExPASy TrEMBL
Match: A0A5D3BWB9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001850 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.9e-28
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1   MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRD 60
           +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDL SSYHQLRIRD
Sbjct: 109 VKKKDESMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSSYHQLRIRD 168

Query: 61  SDIPKTAF 69
           SDIPKTAF
Sbjct: 169 SDIPKTAF 176

[Close]

BLAST of Cmc04g0092551 vs. ExPASy TrEMBL
Match: A0A5A7U1I4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001210 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1   MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRD 60
           MKKND SMRLCIDYRELNKVTVKNRYPL RIDDLFDQLQGAT+FSKIDL S YHQLRIRD
Sbjct: 348 MKKNDGSMRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD 407

Query: 61  SDIPKTAF 69
           SDIPKTAF
Sbjct: 408 SDIPKTAF 415

[Close]

BLAST of Cmc04g0092551 vs. ExPASy TrEMBL
Match: A0A5D3CGU1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00120 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.3e-27
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1   MKKNDRSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLHSSYHQLRIRD 60
           +KK D SMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDL SSYHQLRIR+
Sbjct: 241 VKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRSSYHQLRIRE 300

Query: 61  SDIPKTAF 69
           SDIPKTAF
Sbjct: 301 SDIPKTAF 308

The following BLAST results are available for this feature:

BLAST of Cmc04g0092551 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063198.1	1.6e-35	97.47	gag protease polyprotein [Cucumis melo var. makuwa] >TYK23495.1 gag protease pol...	[more]
KAA0061127.1	1.2e-27	92.65	pol protein [Cucumis melo var. makuwa]	[more]
TYK03797.1	1.2e-27	92.65	pol protein [Cucumis melo var. makuwa]	[more]
KAA0049632.1	3.6e-27	92.65	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK15992.1 D...	[more]
TYK09586.1	4.7e-27	92.65	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0092551 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	9.1e-18	59.42	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	7.7e-17	52.05	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	7.7e-17	52.05	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	2.3e-13	46.05	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.3e-13	46.05	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc04g0092551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6F2	7.7e-36	97.47	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7V2M6	5.9e-28	92.65	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold348G00430 PE...	[more]
A0A5D3BWB9	5.9e-28	92.65	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001850 P...	[more]
A0A5A7U1I4	1.7e-27	92.65	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CGU1	2.3e-27	92.65	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00120 PE...	[more]

BLAST of Cmc04g0092551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..76 e-value: 8.1E-32 score: 112.2
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..74
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..74
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..75 e-value: 4.35181E-34 score: 112.689
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..73 e-value: 3.7E-8 score: 33.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 26..53 e-value: 8.1E-32 score: 112.2
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0092551.1	Cmc04g0092551.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding