Cmc04g0092441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0092441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 4390531 .. 4391076 (+)
RNA-Seq Expression	Cmc04g0092441
Synteny	Cmc04g0092441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTCGGTTTAACGAATGTGCCAGCAGTTTTCATGGATCTCATGAATAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATTGTGTTCATTGATGATATATTAGTTTACACGGTTGACAGAGAATCCCATGAGGAACATCTAAGGATTGTTCTACAGACTGTACGTGATAAACAGTTATACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTAAGGCATGTAGTTTCAGCAAAAGAAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTTATTTGGGAAACACCAATTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGATAAATGCGAGCAAATTTTTCAGGAATTGAAGAAAAGACTAGTTACAGCACCTATTTTGGCACTTCCTGTAATAGGGAAGGACTATGTGATTTATTGTGATGCTTGA

mRNA sequence

ATGTCGTTCGGTTTAACGAATGTGCCAGCAGTTTTCATGGATCTCATGAATAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATTGTGTTCATTGATGATATATTAGTTTACACGGTTGACAGAGAATCCCATGAGGAACATCTAAGGATTGTTCTACAGACTGTACGTGATAAACAGTTATACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTAAGGCATGTAGTTTCAGCAAAAGAAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTTATTTGGGAAACACCAATTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGATAAATGCGAGCAAATTTTTCAGGAATTGAAGAAAAGACTAGTTACAGCACCTATTTTGGCACTTCCTGTAATAGGGAAGGACTATGTGATTTATTGTGATGCTTGA

Coding sequence (CDS)

ATGTCGTTCGGTTTAACGAATGTGCCAGCAGTTTTCATGGATCTCATGAATAGGATCTTCCATCAGTATTTAGATCAGTTTGTGATTGTGTTCATTGATGATATATTAGTTTACACGGTTGACAGAGAATCCCATGAGGAACATCTAAGGATTGTTCTACAGACTGTACGTGATAAACAGTTATACGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTAAGGCATGTAGTTTCAGCAAAAGAAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTTATTTGGGAAACACCAATTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGATAAATGCGAGCAAATTTTTCAGGAATTGAAGAAAAGACTAGTTACAGCACCTATTTTGGCACTTCCTGTAATAGGGAAGGACTATGTGATTTATTGTGATGCTTGA

Protein sequence

MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQLYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCDA

Homology

[Close]

BLAST of Cmc04g0092441 vs. NCBI nr
Match: KAA0053222.1 (hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 338.6 bits (867), Expect = 3.4e-89
Identity = 170/181 (93.92%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           MSFGLTN PAVFMDLMNRIFHQYLDQFVIVFIDDILVY+VDRESHEEHLRIVLQT+RDKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL HVVSAK VSVDPQKVEAVV WE P SATEVRSFLGLAGYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCD 180
           RFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVTAPILALPV GKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

Query: 181 A 182
           A
Sbjct: 842 A 842

[Close]

BLAST of Cmc04g0092441 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 9.8e-89
Identity = 169/181 (93.37%), Postives = 173/181 (95.58%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           M FGLTN PAVFMDLMNRIFH+YLDQFVIVFIDDILVY+VDRESHEEHLRIVLQT+R+KQ
Sbjct: 333 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 392

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL HVVSAK VSVDPQKVEAVV WE PISATEVRSFLGLAGYYR
Sbjct: 393 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 452

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCD 180
           RFIEDFSRLALPLTALTRKNVKFEWSDKCEQ FQELKKRLVTAPILALPV GKDYVIYCD
Sbjct: 453 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 512

Query: 181 A 182
           A
Sbjct: 513 A 513

[Close]

BLAST of Cmc04g0092441 vs. NCBI nr
Match: KAA0050527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 9.8e-89
Identity = 169/181 (93.37%), Postives = 173/181 (95.58%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           M FGLTN PAVFMDLMNRIFH+YLDQFVIVFIDDILVY+VDRESHEEHLRIVLQT+R+KQ
Sbjct: 440 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 499

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL HVVSAK VSVDPQKVEAVV WE PISATEVRSFLGLAGYYR
Sbjct: 500 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 559

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCD 180
           RFIEDFSRLALPLTALTRKNVKFEWSDKCEQ FQELKKRLVTAPILALPV GKDYVIYCD
Sbjct: 560 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 619

Query: 181 A 182
           A
Sbjct: 620 A 620

[Close]

BLAST of Cmc04g0092441 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 9.8e-89
Identity = 169/181 (93.37%), Postives = 173/181 (95.58%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           M FGLTN PAVFMDLMNRIFH+YLDQFVIVFIDDILVY+VDRESHEEHLRIVLQT+R+KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL HVVSAK VSVDPQKVEAVV WE PISATEVRSFLGLAGYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCD 180
           RFIEDFSRLALPLTALTRKNVKFEWSDKCEQ FQELKKRLVTAPILALPV GKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 A 182
           A
Sbjct: 959 A 959

[Close]

BLAST of Cmc04g0092441 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 9.8e-89
Identity = 169/181 (93.37%), Postives = 173/181 (95.58%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           M FGLTN PAVFMDLMNRIFH+YLDQFVIVFIDDILVY+VDRESHEEHLRIVLQT+R+KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL HVVSAK VSVDPQKVEAVV WE PISATEVRSFLGLAGYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCD 180
           RFIEDFSRLALPLTALTRKNVKFEWSDKCEQ FQELKKRLVTAPILALPV GKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 A 182
           A
Sbjct: 959 A 959

[Close]

BLAST of Cmc04g0092441 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-28
Identity = 66/183 (36.07%), Postives = 107/183 (58.47%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           M FGL N PA F   MN I    L++  +V++DDI++++     H   +++V   + D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           L  +  KCEF  ++  FL H+V+   +  +P KV+A+V +  P    E+R+FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQI--FQELKKRLVTAPILALPVIGKDYVIY 180
           +FI +++ +A P+T+  +K  K + + K E I  F++LK  ++  PIL LP   K +V+ 
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID-TQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLT 512

Query: 181 CDA 182
            DA
Sbjct: 513 TDA 514

[Close]

BLAST of Cmc04g0092441 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.7e-28
Identity = 62/182 (34.07%), Postives = 107/182 (58.79%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           M FGL N PA F   MN I    L++  +V++DDI+V++   + H + L +V + +    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           L  +  KCEF  ++  FL HV++   +  +P+K+EA+  +  P    E+++FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSD-KCEQIFQELKKRLVTAPILALPVIGKDYVIYC 180
           +FI +F+ +A P+T   +KN+K + ++ + +  F++LK  +   PIL +P   K + +  
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DA 182
           DA
Sbjct: 514 DA 515

[Close]

BLAST of Cmc04g0092441 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-27
Identity = 69/192 (35.94%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           + FGL N PA+F  +++ I  +++ +   V+IDDI+V++ D ++H ++LR+VL ++    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           L     K  F   QV FL ++V+A  +  DP+KV A+     P S  E++ FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFIEDFSRLALPLTALTR---KNVKFEWSDKCE--------QIFQELKKRLVTAPILALP 180
           +FI+D++++A PLT LTR    N+K   S K          Q F +LK  L ++ ILA P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 VIGKDYVIYCDA 182
              K + +  DA
Sbjct: 430 CFTKPFHLTTDA 441

[Close]

BLAST of Cmc04g0092441 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.8e-24
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 48  HLRIVLQTVRDKQLYAKFSKCEFWLEQVVFL--RHVVSAKEVSVDPQKVEAVVIWETPIS 107
           HL +VLQ     Q YA   KC F   Q+ +L  RH++S + VS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 ATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPI 167
            TE+R FLGL GYYRRF++++ ++  PLT L +KN   +W++     F+ LK  + T P+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LALPVIGKDYV 177
           LALP +   +V
Sbjct: 123 LALPDLKLPFV 132

[Close]

BLAST of Cmc04g0092441 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.7e-23
Identity = 56/181 (30.94%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           M +G++  PA F   +N I  +  +  V+ ++DDIL+++     H +H++ VLQ +++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           L    +KCEF   QV F+ + +S K  +   + ++ V+ W+ P +  E+R FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCD 180
           +FI   S+L  PL  L +K+V+++W+    Q  + +K+ LV+ P+L      K  ++  D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 A 182
           A
Sbjct: 714 A 714

[Close]

BLAST of Cmc04g0092441 vs. ExPASy TrEMBL
Match: A0A5A7UBV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00060 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.6e-89
Identity = 170/181 (93.92%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           MSFGLTN PAVFMDLMNRIFHQYLDQFVIVFIDDILVY+VDRESHEEHLRIVLQT+RDKQ
Sbjct: 662 MSFGLTNAPAVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 721

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL HVVSAK VSVDPQKVEAVV WE P SATEVRSFLGLAGYYR
Sbjct: 722 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 781

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCD 180
           RFIEDFSRLALPLTALTRKN KFEWSDKCEQ FQELKKRLVTAPILALPV GKDYVIYCD
Sbjct: 782 RFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 841

Query: 181 A 182
           A
Sbjct: 842 A 842

[Close]

BLAST of Cmc04g0092441 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.7e-89
Identity = 169/181 (93.37%), Postives = 173/181 (95.58%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           M FGLTN PAVFMDLMNRIFH+YLDQFVIVFIDDILVY+VDRESHEEHLRIVLQT+R+KQ
Sbjct: 741 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 800

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL HVVSAK VSVDPQKVEAVV WE PISATEVRSFLGLAGYYR
Sbjct: 801 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 860

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCD 180
           RFIEDFSRLALPLTALTRKNVKFEWSDKCEQ FQELKKRLVTAPILALPV GKDYVIYCD
Sbjct: 861 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 920

Query: 181 A 182
           A
Sbjct: 921 A 921

[Close]

BLAST of Cmc04g0092441 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.7e-89
Identity = 169/181 (93.37%), Postives = 173/181 (95.58%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           M FGLTN PAVFMDLMNRIFH+YLDQFVIVFIDDILVY+VDRESHEEHLRIVLQT+R+KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL HVVSAK VSVDPQKVEAVV WE PISATEVRSFLGLAGYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCD 180
           RFIEDFSRLALPLTALTRKNVKFEWSDKCEQ FQELKKRLVTAPILALPV GKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 A 182
           A
Sbjct: 959 A 959

[Close]

BLAST of Cmc04g0092441 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.7e-89
Identity = 169/181 (93.37%), Postives = 173/181 (95.58%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           M FGLTN PAVFMDLMNRIFH+YLDQFVIVFIDDILVY+VDRESHEEHLRIVLQT+R+KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL HVVSAK VSVDPQKVEAVV WE PISATEVRSFLGLAGYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCD 180
           RFIEDFSRLALPLTALTRKNVKFEWSDKCEQ FQELKKRLVTAPILALPV GKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 A 182
           A
Sbjct: 959 A 959

[Close]

BLAST of Cmc04g0092441 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.7e-89
Identity = 169/181 (93.37%), Postives = 173/181 (95.58%), Query Frame = 0


Query: 1   MSFGLTNVPAVFMDLMNRIFHQYLDQFVIVFIDDILVYTVDRESHEEHLRIVLQTVRDKQ 60
           M FGLTN PAVFMDLMNRIFH+YLDQFVIVFIDDILVY+VDRESHEEHLRIVLQT+R+KQ
Sbjct: 779 MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 838

Query: 61  LYAKFSKCEFWLEQVVFLRHVVSAKEVSVDPQKVEAVVIWETPISATEVRSFLGLAGYYR 120
           LYAKFSKCEFWLEQVVFL HVVSAK VSVDPQKVEAVV WE PISATEVRSFLGLAGYYR
Sbjct: 839 LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 898

Query: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPILALPVIGKDYVIYCD 180
           RFIEDFSRLALPLTALTRKNVKFEWSDKCEQ FQELKKRLVTAPILALPV GKDYVIYCD
Sbjct: 899 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 958

Query: 181 A 182
           A
Sbjct: 959 A 959

[Close]

BLAST of Cmc04g0092441 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 6.2e-25
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 48  HLRIVLQTVRDKQLYAKFSKCEFWLEQVVFL--RHVVSAKEVSVDPQKVEAVVIWETPIS 107
           HL +VLQ     Q YA   KC F   Q+ +L  RH++S + VS DP K+EA+V W  P +
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 ATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQIFQELKKRLVTAPI 167
            TE+R FLGL GYYRRF++++ ++  PLT L +KN   +W++     F+ LK  + T P+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPV 122

Query: 168 LALPVIGKDYV 177
           LALP +   +V
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc04g0092441 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053222.1	3.4e-89	93.92	hypothetical protein E6C27_scaffold102G00060 [Cucumis melo var. makuwa]	[more]
KAA0050493.1	9.8e-89	93.37	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050527.1	9.8e-89	93.37	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066849.1	9.8e-89	93.37	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035455.1	9.8e-89	93.37	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1...	[more]

BLAST of Cmc04g0092441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.5e-28	36.07	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	7.7e-28	34.07	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	2.2e-27	35.94	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P92523	8.8e-24	42.75	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0CT41	9.7e-23	30.94	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc04g0092441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBV9	1.6e-89	93.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U2V7	4.7e-89	93.37	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	4.7e-89	93.37	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	4.7e-89	93.37	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	4.7e-89	93.37	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]

BLAST of Cmc04g0092441 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	6.2e-25	42.75	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 145..181 e-value: 3.9E-7 score: 30.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..175 e-value: 1.6E-30 score: 106.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..88 e-value: 1.3E-28 score: 101.6
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..82 e-value: 6.2E-13 score: 48.8
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..168
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..168
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 5.5624E-33 score: 113.844
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0092441.1	Cmc04g0092441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding