Cmc04g0092031 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0092031
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	CMiso1.1chr04: 3816610 .. 3819377 (-)
RNA-Seq Expression	Cmc04g0092031
Synteny	Cmc04g0092031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGGCCTGTGATCCAGTCCGTAATTACTGAGGCCCAATTGTTGATTAGGGCTCACTCAGTTCGCTCCTGAATTCATCGTTTTCGTATTTTGTTTCAACCGAGCATCTGCAACGCACGTGCTTCCAAGATTTTAACTTCTTCTAGCGCTCTTTCTTCTCCGGCGATTCCTCTCCTCCTTGTTTCCCTCACCTCCGTTTCAATGGAGGGGCTTAAGGTTTCCGATGCCAATATGGTTGTTTACGTTCACCCGTCAAAAAGTAAGAAGGTTTCGCAAGCGGTGCTTCGAGAGCTCGGCGCTATGCTTCTAAAGTAAGTCAAACTTCTTTTAGGCTTTCAACAGTTGTAGTGTCTAGTCTCTTGCAATTATAAGTTTTCCAGTTATTGACGGCGTTGGTTTGTTGAATTACTTGATTGGGGATACTATTTGTTAGTGGCAGAGTTGGACTAGCACAAATATGAAGTTAAGTCGCGTTACTAACACTGAATTTAGCCTTCAGAAATAGACGATTTTTGTTTGTTTCTGCGTTTCTATCAAGTAGATTTTGTTTTCTGGCTTGCTATTCTGAATGGACGAAATAAACATTTGGGTTGTGCTGTTTATGAACTCAGAATGTAAGATTTTGTTCTTGATTTTTGGGGAAAAATTAATTCATTTAGGAAATATTAAATATTTTTCATTCTCTTTGAACTCAAAGGCTTGAAGTTTAAACTTCTAGTGATTGTCATTGCTGCTTCTTTTGCTTCATTTAATCAACATTCAAGTTCATTTTTGTGGTCGATACCTATAAACTTGGGTCGTTAACTGCATTTTTTAATATTGCGTTCATTCTGTAGGTTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTACGAGGCCAAAATTATTGATAAAAATGCAAAGATTCTATCTGGAGTGCATCCTTATTTTGGCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGGTTGGTTTTCCATGATTCTCATTGTATGTGAAGGAGTTTCATTTGTGATCTGGTCTCTCCCTTGTTTCCACTTGGAAAACAACACATCTAGAATCAAGTTGTTAATTATCAAGCTTGCATTTTAACATTCTTAGGGTACTTCATTGCATTATGATGGTAGACATATTAAATTGACTAATAGGAGGCCAAATGTTTTATTCCTCTTGTCCATGCTTTGTTGATAGTTTTCTTATCACTTCAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACATATGAAGACATTCGCGACGAATTCAAGCATAGAACAGTATGTTTTGTGCATTGTACTTGTGAATTCCTACCTTTCCCATTGATACACAGATCAGAAGGAAGTTTTCATTATCTTGTCTTGATTGTTTTGTGCATTGATTCTGACTTAGAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGGTTAGGTTTTTCCCTTTGATTATGCTTATCCCATAACATATAAGTCGAAAGTTAATCTTGAAGTTTTCGTCCAAATAATTGAAGAGCTGGAGTACCATGCTCATAGCTGATCGACAGCTCACCATAGGCTATTAATATTTCCCTATTCTTGATCTTCAGTTATGCAAATACCTTGATTATGTAAAAAGTGATTCATTCAACCTTGCAGTTTTGATGAGGAAATATTACATATATCTGGATCTCTAGTTCCATCTCATACAGGGAGCATCCATTGGTTGGAGAAGAATTCGGTTGAGGGTTCAGTAAGTATGAGGTGAGAAACTAAATTCTAAGAAGTTTTGAGCTATAATCCCCAAATGTCTTAATCTATTTTTTTTTCTCCCCTTAATTTTGCAGCAGTAAAAAGAAGATGAGAGAAAACGAGGGTGGGGTAATGTTGCAAGATAGTGTTGGCACTGATGTAAATGCAGTTATCTTGAACGACCATCAGCCGAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGAAGGCTACTAGTTGTCGTATAACATAGATCATTTTTGTATCAGGTAACTTTTGCCATACTTCTCAATAGGATAGCTAAACTCTTGCTCTCTCAATTCATGCCTAAAATCTACATTAGCCACAAATTTAGCTGGAAAGTATATTTGAATTTGATTGTATATCTAGGGTGATGATGATTCAAACTTCTAAAGCAGAGATCCTCATTGTTTTAGTAAGAAAGAATTGGGAGATGCACCTTGCTGTTGGAAAACCACCTCCACTAAGATATCGACAACTTTTATATATCAGGGTGTGGACAAATGCAGCTCCTCGTTTTTGTAACATTATGAAGTTATGGCTCAAATCCATGTATTATGGGCTTAGGCCCAATGGACCTCGGTGAGTGAACGATATTTTACAGCCCAAATCTTGTGTCCAATATTGCATTTGGTAGGAAGTTTAATAACAGATGTCAACCGCCTAGACTTTGCTGAATATCGTCTTAAGATTTAGAACATTACATTTCTTAATTTCTTTCAAAAATCACGCACACACAAACAAACACTACACCACCAAACCGTTGGTTTATCAATCATTGTAATGAGGATATGATTTTGGGTTTGCAAGTACATTCCATTTGCACCGTTGACTCATGATTGCCACTGTACCTCTCATCTCCATTATGGGTTCTTATTTTTTTTTTTTTATAGAAGCTGCAAATAATT

mRNA sequence

GTTGGGCCTGTGATCCAGTCCGTAATTACTGAGGCCCAATTGTTGATTAGGGCTCACTCAGTTCGCTCCTGAATTCATCGTTTTCGTATTTTGTTTCAACCGAGCATCTGCAACGCACGTGCTTCCAAGATTTTAACTTCTTCTAGCGCTCTTTCTTCTCCGGCGATTCCTCTCCTCCTTGTTTCCCTCACCTCCGTTTCAATGGAGGGGCTTAAGGTTTCCGATGCCAATATGGTTGTTTACGTTCACCCGTCAAAAAGTAAGAAGGTTTCGCAAGCGGTGCTTCGAGAGCTCGGCGCTATGCTTCTAAAGTTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTACGAGGCCAAAATTATTGATAAAAATGCAAAGATTCTATCTGGAGTGCATCCTTATTTTGGCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACATATGAAGACATTCGCGACGAATTCAAGCATAGAACAAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGTTTTGATGAGGAAATATTACATATATCTGGATCTCTAGTTCCATCTCATACAGGGAGCATCCATTGGTTGGAGAAGAATTCGGTTGAGGGTTCAGTAAGTATGAGCAGTAAAAAGAAGATGAGAGAAAACGAGGGTGGGGTAATGTTGCAAGATAGTGTTGGCACTGATGTAAATGCAGTTATCTTGAACGACCATCAGCCGAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGAAGGCTACTAGTTGTCGTATAACATAGATCATTTTTGTATCAGTAAGAAAGAATTGGGAGATGCACCTTGCTGTTGGAAAACCACCTCCACTAAGATATCGACAACTTTTATATATCAGGGTGTGGACAAATGCAGCTCCTCGTTTTTGTAACATTATGAAGTTATGGCTCAAATCCATGTATTATGGGCTTAGGCCCAATGGACCTCGGTGAGTGAACGATATTTTACAGCCCAAATCTTGTGTCCAATATTGCATTTGGTAGGAAGTTTAATAACAGATGTCAACCGCCTAGACTTTGCTGAATATCGTCTTAAGATTTAGAACATTACATTTCTTAATTTCTTTCAAAAATCACGCACACACAAACAAACACTACACCACCAAACCGTTGGTTTATCAATCATTGTAATGAGGATATGATTTTGGGTTTGCAAGTACATTCCATTTGCACCGTTGACTCATGATTGCCACTGTACCTCTCATCTCCATTATGGGTTCTTATTTTTTTTTTTTTATAGAAGCTGCAAATAATT

Coding sequence (CDS)

ATGGAGGGGCTTAAGGTTTCCGATGCCAATATGGTTGTTTACGTTCACCCGTCAAAAAGTAAGAAGGTTTCGCAAGCGGTGCTTCGAGAGCTCGGCGCTATGCTTCTAAAGTTTGATGAAAAATTTGAAGGCGTGCTACTGGCTTACGAGGCCAAAATTATTGATAAAAATGCAAAGATTCTATCTGGAGTGCATCCTTATTTTGGCGTGACAATAAAGGCAAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCAATCCATGTTATTGTCTTGGGTTTTGCTTCTGCTGTAATAACATATGAAGACATTCGCGACGAATTCAAGCATAGAACAAAACATGGAGAAGAAATGTTTGTCAGCAGAGCTCACAAGCACCATGTAATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGTTTTGATGAGGAAATATTACATATATCTGGATCTCTAGTTCCATCTCATACAGGGAGCATCCATTGGTTGGAGAAGAATTCGGTTGAGGGTTCAGTAAGTATGAGCAGTAAAAAGAAGATGAGAGAAAACGAGGGTGGGGTAATGTTGCAAGATAGTGTTGGCACTGATGTAAATGCAGTTATCTTGAACGACCATCAGCCGAAAACCAAAAAGCAAAAAACTACCAGAATATCTTGA

Protein sequence

MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKILSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEFKHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSVEGSVSMSSKKKMRENEGGVMLQDSVGTDVNAVILNDHQPKTKKQKTTRIS

Homology

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BLAST of Cmc04g0092031 vs. NCBI nr
Match: XP_008466499.1 (PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >XP_016903501.1 PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >KAA0063270.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa] >TYK31504.1 putative DNA-directed RNA polymerase I subunit RPA43 [Cucumis melo var. makuwa])

HSP 1 Score: 446.4 bits (1147), Expect = 1.5e-121
Identity = 230/231 (99.57%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSMSSKKKMRENEGGVMLQDSVGTDVNAVILNDHQPKTKKQKTTRIS 232
           VEGSVSMSSKKKMRENEGGVMLQD+VGTDVNAVILNDHQPKTKKQKTTRIS
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVILNDHQPKTKKQKTTRIS 231

[Close]

BLAST of Cmc04g0092031 vs. NCBI nr
Match: XP_008466500.1 (PREDICTED: uncharacterized protein LOC103503892 isoform X2 [Cucumis melo])

HSP 1 Score: 440.3 bits (1131), Expect = 1.0e-119
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSMSSKKKMRENEGGVMLQDSVGTDVNAVILNDHQPKTKKQKTTRIS 232
           VEGSVSM SKKKMRENEGGVMLQD+VGTDVNAVILNDHQPKTKKQKTTRIS
Sbjct: 181 VEGSVSM-SKKKMRENEGGVMLQDTVGTDVNAVILNDHQPKTKKQKTTRIS 230

[Close]

BLAST of Cmc04g0092031 vs. NCBI nr
Match: XP_011652444.1 (uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737671.1 uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737672.1 uncharacterized protein LOC101216589 [Cucumis sativus] >KGN60019.1 hypothetical protein Csa_001209 [Cucumis sativus])

HSP 1 Score: 426.8 bits (1096), Expect = 1.2e-115
Identity = 223/232 (96.12%), Postives = 227/232 (97.84%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKK+SQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKISQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHKHH+IKVGTMIR LVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHIIKVGTMIRLLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSMSSKKKMRENEGGVMLQDSVGTDVNAVIL-NDHQPKTKKQKTTRIS 232
           VEGSV+M SK+KMRENEGGV LQDSVGTDVNAVIL NDHQPKTKKQK TRIS
Sbjct: 181 VEGSVTM-SKRKMRENEGGVTLQDSVGTDVNAVILNNDHQPKTKKQKPTRIS 231

[Close]

BLAST of Cmc04g0092031 vs. NCBI nr
Match: XP_038898978.1 (uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida])

HSP 1 Score: 414.1 bits (1063), Expect = 8.1e-112
Identity = 217/232 (93.53%), Postives = 224/232 (96.55%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           M+GLKVSDANMVVYVHPSKSKKVSQAVLR LGAMLLKFDEKFEGVLLAYEAKIIDK AKI
Sbjct: 1   MDGLKVSDANMVVYVHPSKSKKVSQAVLRVLGAMLLKFDEKFEGVLLAYEAKIIDKIAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNML+EGKVVKLRQESIHVIVLGFASAVIT EDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLVEGKVVKLRQESIHVIVLGFASAVITNEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHI+GSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHIAGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSMSSKKKMRENEGGVMLQDSVGTDVNAVIL-NDHQPKTKKQKTTRIS 232
           VEG+V+ SSKKKMRENEG VMLQDSV T+VNA+IL NDHQ KTKKQKTTRIS
Sbjct: 181 VEGTVTSSSKKKMRENEGEVMLQDSVATEVNALILNNDHQSKTKKQKTTRIS 232

[Close]

BLAST of Cmc04g0092031 vs. NCBI nr
Match: XP_022148351.1 (uncharacterized protein LOC111016757 [Momordica charantia] >XP_022149084.1 uncharacterized protein LOC111016757 [Momordica charantia])

HSP 1 Score: 398.3 bits (1022), Expect = 4.6e-107
Identity = 206/232 (88.79%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDAN+VVYVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAY+AKI DK+AKI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA IT EDIRDEF
Sbjct: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSMSSKKKMRENEGGVMLQDSVGTDVNAVIL-NDHQPKTKKQKTTRIS 232
           +EGSV+   +KK R+NEG  +LQDSV TDVNA+IL NDHQ KTKKQKT+RIS
Sbjct: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 232

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BLAST of Cmc04g0092031 vs. ExPASy Swiss-Prot
Match: O43036 (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa43 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.4e-05
Identity = 38/163 (23.31%), Postives = 82/163 (50.31%), Query Frame = 0


Query: 10  NMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYE-AKIIDKNAKILSGVHPYF 69
           ++ + + P  S+    A+   + +M+L    +  G++LAY+  + ++K+AK++    P+ 
Sbjct: 12  DLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYD-SPFS 71

Query: 70  GVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDI-RDEFKHRTKHG 129
            + ++  +L+FSPK    LEGK+  +    I +++LG  +A I  + I +D         
Sbjct: 72  FIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTT 131

Query: 130 EEMFVSRAHKHHVIKVGTMIRFLVKSFDEE--ILHISGSLVPS 169
           EE    + +  ++++ G  + F+V     E  +  + G+L  S
Sbjct: 132 EEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLTMVQGTLANS 173

[Close]

BLAST of Cmc04g0092031 vs. ExPASy TrEMBL
Match: A0A1S4E5I5 (uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 7.1e-122
Identity = 230/231 (99.57%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSMSSKKKMRENEGGVMLQDSVGTDVNAVILNDHQPKTKKQKTTRIS 232
           VEGSVSMSSKKKMRENEGGVMLQD+VGTDVNAVILNDHQPKTKKQKTTRIS
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVILNDHQPKTKKQKTTRIS 231

[Close]

BLAST of Cmc04g0092031 vs. ExPASy TrEMBL
Match: A0A5D3E6A0 (Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008220 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 7.1e-122
Identity = 230/231 (99.57%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSMSSKKKMRENEGGVMLQDSVGTDVNAVILNDHQPKTKKQKTTRIS 232
           VEGSVSMSSKKKMRENEGGVMLQD+VGTDVNAVILNDHQPKTKKQKTTRIS
Sbjct: 181 VEGSVSMSSKKKMRENEGGVMLQDTVGTDVNAVILNDHQPKTKKQKTTRIS 231

[Close]

BLAST of Cmc04g0092031 vs. ExPASy TrEMBL
Match: A0A1S3CRF8 (uncharacterized protein LOC103503892 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503892 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.1e-120
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSMSSKKKMRENEGGVMLQDSVGTDVNAVILNDHQPKTKKQKTTRIS 232
           VEGSVSM SKKKMRENEGGVMLQD+VGTDVNAVILNDHQPKTKKQKTTRIS
Sbjct: 181 VEGSVSM-SKKKMRENEGGVMLQDTVGTDVNAVILNDHQPKTKKQKTTRIS 230

[Close]

BLAST of Cmc04g0092031 vs. ExPASy TrEMBL
Match: A0A0A0LGG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866520 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 5.8e-116
Identity = 223/232 (96.12%), Postives = 227/232 (97.84%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDANMVVYVHPSKSKK+SQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI
Sbjct: 1   MEGLKVSDANMVVYVHPSKSKKISQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHGEEMFVSRAHKHH+IKVGTMIR LVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHIIKVGTMIRLLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSMSSKKKMRENEGGVMLQDSVGTDVNAVIL-NDHQPKTKKQKTTRIS 232
           VEGSV+M SK+KMRENEGGV LQDSVGTDVNAVIL NDHQPKTKKQK TRIS
Sbjct: 181 VEGSVTM-SKRKMRENEGGVTLQDSVGTDVNAVILNNDHQPKTKKQKPTRIS 231

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BLAST of Cmc04g0092031 vs. ExPASy TrEMBL
Match: A0A6J1D5Y9 (uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016757 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.2e-107
Identity = 206/232 (88.79%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLKVSDAN+VVYVHPSKSKKVSQAVLRELGAMLLKFDE+FEGVLLAY+AKI DK+AKI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA IT EDIRDEF
Sbjct: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 VEGSVSMSSKKKMRENEGGVMLQDSVGTDVNAVIL-NDHQPKTKKQKTTRIS 232
           +EGSV+   +KK R+NEG  +LQDSV TDVNA+IL NDHQ KTKKQKT+RIS
Sbjct: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of Cmc04g0092031 vs. TAIR 10
Match: AT1G75670.1 (DNA-directed RNA polymerases )

HSP 1 Score: 229.2 bits (583), Expect = 3.4e-60
Identity = 105/182 (57.69%), Postives = 146/182 (80.22%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLK+S+A +++++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIHVIVLGF++AVIT  DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           K+R + GE  FVSR+HK H +K+GTM+R  V+SFDEE++HI+GSL+P +TG + WLEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 VE 183
            E
Sbjct: 181 EE 182

[Close]

BLAST of Cmc04g0092031 vs. TAIR 10
Match: AT1G75670.2 (DNA-directed RNA polymerases )

HSP 1 Score: 229.2 bits (583), Expect = 3.4e-60
Identity = 105/182 (57.69%), Postives = 146/182 (80.22%), Query Frame = 0


Query: 1   MEGLKVSDANMVVYVHPSKSKKVSQAVLRELGAMLLKFDEKFEGVLLAYEAKIIDKNAKI 60
           MEGLK+S+A +++++HPS+S+ V Q + REL ++L +++E F+GVLLAY+A +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITYEDIRDEF 120
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ESIHVIVLGF++AVIT  DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           K+R + GE  FVSR+HK H +K+GTM+R  V+SFDEE++HI+GSL+P +TG + WLEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 VE 183
            E
Sbjct: 181 EE 182

The following BLAST results are available for this feature:

BLAST of Cmc04g0092031 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466499.1	1.5e-121	99.57	PREDICTED: uncharacterized protein LOC103503892 isoform X1 [Cucumis melo] >XP_01...	[more]
XP_008466500.1	1.0e-119	99.13	PREDICTED: uncharacterized protein LOC103503892 isoform X2 [Cucumis melo]	[more]
XP_011652444.1	1.2e-115	96.12	uncharacterized protein LOC101216589 [Cucumis sativus] >XP_031737671.1 uncharact...	[more]
XP_038898978.1	8.1e-112	93.53	uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida]	[more]
XP_022148351.1	4.6e-107	88.79	uncharacterized protein LOC111016757 [Momordica charantia] >XP_022149084.1 uncha...	[more]

BLAST of Cmc04g0092031 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O43036	1.4e-05	23.31	DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of Cmc04g0092031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E5I5	7.1e-122	99.57	uncharacterized protein LOC103503892 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3E6A0	7.1e-122	99.57	Putative DNA-directed RNA polymerase I subunit RPA43 OS=Cucumis melo var. makuwa...	[more]
A0A1S3CRF8	5.1e-120	99.13	uncharacterized protein LOC103503892 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LGG8	5.8e-116	96.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866520 PE=4 SV=1	[more]
A0A6J1D5Y9	2.2e-107	88.79	uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of Cmc04g0092031 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75670.1	3.4e-60	57.69	DNA-directed RNA polymerases	[more]
AT1G75670.2	3.4e-60	57.69	DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.1060		coord: 86..231 e-value: 5.7E-6 score: 28.6
None	No IPR available	PANTHER	PTHR12709:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43	coord: 1..226
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 2..83 e-value: 5.7E-7 score: 31.3
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0092031.1	Cmc04g0092031.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity