Cmc04g0089961 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0089961
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	E3 ubiquitin-protein ligase synoviolin B-like
Location	CMiso1.1chr04: 2240615 .. 2241923 (+)
RNA-Seq Expression	Cmc04g0089961
Synteny	Cmc04g0089961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGGAAGGAAATGTTTTGGTAACACAGGAGGGAGAGACCAGGACGAAAAGAGCCGTTACATAAATCCGAACGACGGCCGTCGGTGGAGCGCTAACCACAGGCAGTTCAAATTAGAAATTTCCAACGGTCAGAAAATCTCTTGACAGTATCTATCGATCTCACCGCCCTCTACCGTCTTCCTTCCCCTGTTTTACTAATCGAAACTCCATCTCTCAAATTGTTCAATTCTAACCCAACGGCCGATTGATTTAAGAGAGAAATTCCCAAAATCAAACACATCTTTCTTCTTCTTCTTCTTCTTCTTCTGCTGCTGCTAGTGCTGGTGCTGCTGTTAATAAATCAGAATTTCTCATAAACGTATTTTCATCCATCACCATGTCTTCCACTACGACTCTGTCTCTTGAATGCTGTATTCACAGCAGCGTCGCCACCACCGCAGACGAGCAACTCGTGGAAATCCGATTAAGGAGATACAGCAAATTAGTGTCTCCATCTTCCAACCAAATCATCCAACAAACTTTCCCAACTCCGATTTCCGATGCTCTGTTTCACTTTCCTCTGCCGGAGCTTGAACTTGAAAACCCACCCTTCTTCTTCCACGACTTGCTCCTTCAATTCCTCTCTCCGGCAGACTCCACCGCCATATTCCACAATATCTCCTCCTTCGCCCTTCAACTGGCCGCCGGCAACCTCAATCTTAATTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGGTAGACCTGGACCTGGACCCACCACAGTATTCACCGCCGGTGAGGAATGGGGCGCCAGCGTCGGTCATCGAGCGGCTAATGGATGAGAAATATGATGATGAGAATGGGCGGGAAGAGATGGGAGATCAGTGCTGCGTTTGTTATGAAGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGAGGTGACAAGAATCCCTTGCGGGCACGTCTATCACAAGTACTGTATTCTCAAATGGCTCAATATAAACAATTCATGTCCTTTGTGCAGAAGGGAATTTCGTTGAAAATTTAACCAACGGTTACTTAACCCTAAGAACAAATAGGAGATTTAAATTCTGAGAGGGAAATTAGAGAGTGTTTTTGTACTTAGCTGTATAGAAGTTCTTCTCTCAAAGAAATCAGCTTGATTTCTGAGGATGTCATAGGTCGTCAGTCTTCTTGTCATTAAAGAATTAACGTTGTGTAACACCTTTAAAGTTTAAGCTAAAGATTGCAACAACTCAAAGTTTATGGTCGAATTTGTTTTTTCCCCTCAAGTTTTTATTTCTCTGAAGAATAGG

mRNA sequence

GTGGGAAGGAAATGTTTTGGTAACACAGGAGGGAGAGACCAGGACGAAAAGAGCCGTTACATAAATCCGAACGACGGCCGTCGGTGGAGCGCTAACCACAGGCAGTTCAAATTAGAAATTTCCAACGGTCAGAAAATCTCTTGACAGTATCTATCGATCTCACCGCCCTCTACCGTCTTCCTTCCCCTGTTTTACTAATCGAAACTCCATCTCTCAAATTGTTCAATTCTAACCCAACGGCCGATTGATTTAAGAGAGAAATTCCCAAAATCAAACACATCTTTCTTCTTCTTCTTCTTCTTCTTCTGCTGCTGCTAGTGCTGGTGCTGCTGTTAATAAATCAGAATTTCTCATAAACGTATTTTCATCCATCACCATGTCTTCCACTACGACTCTGTCTCTTGAATGCTGTATTCACAGCAGCGTCGCCACCACCGCAGACGAGCAACTCGTGGAAATCCGATTAAGGAGATACAGCAAATTAGTGTCTCCATCTTCCAACCAAATCATCCAACAAACTTTCCCAACTCCGATTTCCGATGCTCTGTTTCACTTTCCTCTGCCGGAGCTTGAACTTGAAAACCCACCCTTCTTCTTCCACGACTTGCTCCTTCAATTCCTCTCTCCGGCAGACTCCACCGCCATATTCCACAATATCTCCTCCTTCGCCCTTCAACTGGCCGCCGGCAACCTCAATCTTAATTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGGTAGACCTGGACCTGGACCCACCACAGTATTCACCGCCGGTGAGGAATGGGGCGCCAGCGTCGGTCATCGAGCGGCTAATGGATGAGAAATATGATGATGAGAATGGGCGGGAAGAGATGGGAGATCAGTGCTGCGTTTGTTATGAAGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGAGGTGACAAGAATCCCTTGCGGGCACGTCTATCACAAGTACTGTATTCTCAAATGGCTCAATATAAACAATTCATGTCCTTTGTGCAGAAGGGAATTTCGTTGAAAATTTAACCAACGGTTACTTAACCCTAAGAACAAATAGGAGATTTAAATTCTGAGAGGGAAATTAGAGAGTGTTTTTGTACTTAGCTGTATAGAAGTTCTTCTCTCAAAGAAATCAGCTTGATTTCTGAGGATGTCATAGGTCGTCAGTCTTCTTGTCATTAAAGAATTAACGTTGTGTAACACCTTTAAAGTTTAAGCTAAAGATTGCAACAACTCAAAGTTTATGGTCGAATTTGTTTTTTCCCCTCAAGTTTTTATTTCTCTGAAGAATAGG

Coding sequence (CDS)

ATGTCTTCCACTACGACTCTGTCTCTTGAATGCTGTATTCACAGCAGCGTCGCCACCACCGCAGACGAGCAACTCGTGGAAATCCGATTAAGGAGATACAGCAAATTAGTGTCTCCATCTTCCAACCAAATCATCCAACAAACTTTCCCAACTCCGATTTCCGATGCTCTGTTTCACTTTCCTCTGCCGGAGCTTGAACTTGAAAACCCACCCTTCTTCTTCCACGACTTGCTCCTTCAATTCCTCTCTCCGGCAGACTCCACCGCCATATTCCACAATATCTCCTCCTTCGCCCTTCAACTGGCCGCCGGCAACCTCAATCTTAATTTCCACCTCATCGCCACAGTGGATTTACTCTACACGATCTCGGTAGACCTGGACCTGGACCCACCACAGTATTCACCGCCGGTGAGGAATGGGGCGCCAGCGTCGGTCATCGAGCGGCTAATGGATGAGAAATATGATGATGAGAATGGGCGGGAAGAGATGGGAGATCAGTGCTGCGTTTGTTATGAAGATCTCAACTGTGAAAGGGAAGAGGAAAAGGAGGAGGAGGTGACAAGAATCCCTTGCGGGCACGTCTATCACAAGTACTGTATTCTCAAATGGCTCAATATAAACAATTCATGTCCTTTGTGCAGAAGGGAATTTCGTTGA

Protein sequence

MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHFPLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISVDLDLDPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR

Homology

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BLAST of Cmc04g0089961 vs. NCBI nr
Match: XP_008466247.1 (PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo] >KAA0038718.1 E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo var. makuwa] >TYK31330.1 E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo var. makuwa])

HSP 1 Score: 438.3 bits (1126), Expect = 3.8e-119
Identity = 216/218 (99.08%), Postives = 216/218 (99.08%), Query Frame = 0


Query: 1   MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 60
           MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF
Sbjct: 1   MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 60

Query: 61  PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120
           PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY
Sbjct: 61  PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120

Query: 121 TISVDLDLDPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREE 180
           TISVDLDLDPPQYSP VRNGAPASVIERLMDEKYDD NGREEMGDQCCVCYEDLNCEREE
Sbjct: 121 TISVDLDLDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDLNCEREE 180

Query: 181 EKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR 219
           EKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR
Sbjct: 181 EKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR 218

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BLAST of Cmc04g0089961 vs. NCBI nr
Match: XP_011652885.1 (RING-H2 finger protein ATL66 [Cucumis sativus] >KGN60202.1 hypothetical protein Csa_002222 [Cucumis sativus])

HSP 1 Score: 365.9 bits (938), Expect = 2.4e-97
Identity = 184/218 (84.40%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 60
           MSSTT LSL+CC+  S+ TTAD+QLVEIRLRR+SKLVSP SNQ IQQTFPT IS+ALFHF
Sbjct: 1   MSSTTNLSLDCCVR-SIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHF 60

Query: 61  PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120
           PLPELELENP   FHD LLQFLSPADS AIFHNISSFALQLAAGNLNLNFHLIATVDLLY
Sbjct: 61  PLPELELENPS-LFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120

Query: 121 TISVDLDLDPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREE 180
           TIS++L+L+PPQYSPPVRNG PASV+ERLM+EKYDD NG E MG QCCVCYEDLNCEREE
Sbjct: 121 TISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREE 180

Query: 181 EKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR 219
           EK EE TRIPCGHVYHK CILKWLN+NNSCPLCR EFR
Sbjct: 181 EK-EEATRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR 215

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BLAST of Cmc04g0089961 vs. NCBI nr
Match: XP_011650219.1 (RING-H2 finger protein ATL16 [Cucumis sativus] >KGN63362.1 hypothetical protein Csa_022479 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-51
Identity = 129/226 (57.08%), Postives = 150/226 (66.37%), Query Frame = 0


Query: 1   MSSTTTLSLECCI----HSSVATTADE-QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISD 60
           MSS TT S  C I    + S AT     Q VE+RL  +S+LV   S+QI+QQT P  ISD
Sbjct: 1   MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60

Query: 61  ALFHFPLPELELENPPFFFHDLLLQFL-----SPADSTAIFHNISSFALQLAAGNLNLNF 120
            L  FPL   ELE+PPF  H  L +FL     S A   AIF  ISSFA QL AGNLN NF
Sbjct: 61  TLIRFPL--RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNF 120

Query: 121 HLIATVDLLYTISVDLDLDPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVC 180
           H+IA +D +YT  V  DLDP + +  VR GAP S IERLM EKYD  NG EEM D+C VC
Sbjct: 121 HIIAALDFVYTHWV--DLDPAEDAAAVRQGAPRSAIERLMKEKYDG-NGGEEMEDECSVC 180

Query: 181 YEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRRE 217
           YEDL+   + EKE+EV+RIPCGH++HK CILKWL I+NSCPLCR E
Sbjct: 181 YEDLH--GKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGE 219

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BLAST of Cmc04g0089961 vs. NCBI nr
Match: XP_031740500.1 (E3 ubiquitin-protein ligase At1g63170-like [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-49
Identity = 127/232 (54.74%), Postives = 153/232 (65.95%), Query Frame = 0


Query: 1   MSSTTTLSLECCIH----SSVATTADE-QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISD 60
           MS   T S +C I     SS+AT     Q V++RLR + +LV   S QI+QQT PT ISD
Sbjct: 1   MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60

Query: 61  ALFHFPLPELELENPPFFFHDLLLQFLSPADST-----AIFHNISSFALQL---AAGNLN 120
            L  F L   ELE+PPF  +  L +FLS  D +     AIF+NISSFA Q+   A  N+N
Sbjct: 61  TLIPFSL--WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNIN 120

Query: 121 LNFHLIATVDLLYTISVDLDLDPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMG-DQ 180
           +NFH+IA VD++YT  V  DLDP + +P VR GA  SVIER+M EKYD   G E+ G DQ
Sbjct: 121 VNFHIIADVDIVYTHWV--DLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQ 180

Query: 181 CCVCYEDL--NCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRRE 217
           C VCYE L    E E EKE+EV+RIPCGH+YHK CILKWL I+NSCPLCRRE
Sbjct: 181 CSVCYEQLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRE 228

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BLAST of Cmc04g0089961 vs. NCBI nr
Match: XP_023006826.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima])

HSP 1 Score: 186.0 bits (471), Expect = 3.4e-43
Identity = 114/219 (52.05%), Postives = 140/219 (63.93%), Query Frame = 0


Query: 7   LSLECCIHSSVATTADE-----QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHFP 66
           LS +C I S+   T        QL+E+RL   + L+S SS QI+QQT  TPI DALF F 
Sbjct: 9   LSFQCSIQSTCNGTVASGQQPIQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFV 68

Query: 67  LPELELENPPFFFHDLLLQFLSP-----ADSTAIFHNISSFALQLAAGNLNLNFHLIATV 126
           L   +L++PPF  +  +LQFLS      A    I+  ISSFALQLAAGN++LNFH++  V
Sbjct: 69  L--RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEV 128

Query: 127 DLLYTISVDLD-LDPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLN 186
           D+   I VDLD     +YSP   NGAPAS IERL  +K+D     EE GD C VC E L 
Sbjct: 129 DVNEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQKFDGLREEEEEGD-CSVCCEAL- 188

Query: 187 CEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCR 215
                + EEEV+RIPCGHVYHK+CILKWL ++NSCPLCR
Sbjct: 189 -----KGEEEVSRIPCGHVYHKFCILKWLQMSNSCPLCR 218

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BLAST of Cmc04g0089961 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 129 DPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREEEKEEEVTR 188
           DP +Y  P    A  S IE L        N   E  +QC VC +D       E+  E  +
Sbjct: 190 DPNRYGTP---PASKSAIEALPLVNITKSNLNSEF-NQCAVCMDDF------EEGTEAKQ 249

Query: 189 IPCGHVYHKYCILKWLNINNSCPLCRRE 217
           +PC H+YHK C+L WL ++NSCP+CR E
Sbjct: 250 MPCKHLYHKDCLLPWLELHNSCPVCRHE 267

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BLAST of Cmc04g0089961 vs. ExPASy Swiss-Prot
Match: Q9Y7K6 (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.04c PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 27/84 (32.14%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 133 YSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREEEKEEEVTRIPCG 192
           + PPV+     +       + ++  +  + M   C +CY+D+N    E  E++ T++PCG
Sbjct: 79  FQPPVKRAVKEAW------DSFEPLSNDQLMDLTCPICYDDMN----ENDEKQATKMPCG 138

Query: 193 HVYHKYCILKWLNINNSCPLCRRE 217
           H++ K C+ KWL  + +CPLCR+E
Sbjct: 139 HIFGKNCLQKWLENHCTCPLCRKE 152

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BLAST of Cmc04g0089961 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.4e-09
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 129 DPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREEEKEEEVTR 188
           DP +Y  P    A  S I+ L   K   +  + EM +QC VC +      E E   +V +
Sbjct: 182 DPNRYGTP---PASKSAIDALPTVKVTKDMLKSEM-NQCAVCMD------EFEDGSDVKQ 241

Query: 189 IPCGHVYHKYCILKWLNINNSCPLCRRE 217
           +PC HV+H+ C+L WL ++NSCP+CR E
Sbjct: 242 MPCKHVFHQDCLLPWLELHNSCPVCRFE 259

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BLAST of Cmc04g0089961 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-08
Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 166 QCCVCYEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRR 216
           QC +C++D         +E V ++PC H+YH+ CI+ WLN++++CP+CR+
Sbjct: 252 QCSICWDDFKI------DETVRKLPCSHLYHENCIVPWLNLHSTCPICRK 295

[Close]

BLAST of Cmc04g0089961 vs. ExPASy Swiss-Prot
Match: Q9Y4L5 (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-07
Identity = 23/54 (42.59%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 162 EMGDQCCVCYEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRR 216
           +MG +C VC ED         EEEV ++PC H +H  CI+ WL ++++CP+CR+
Sbjct: 223 DMGLECPVCKEDYTV------EEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRK 270

[Close]

BLAST of Cmc04g0089961 vs. ExPASy TrEMBL
Match: A0A5A7T784 (E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006300 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 1.8e-119
Identity = 216/218 (99.08%), Postives = 216/218 (99.08%), Query Frame = 0


Query: 1   MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 60
           MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF
Sbjct: 1   MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 60

Query: 61  PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120
           PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY
Sbjct: 61  PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120

Query: 121 TISVDLDLDPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREE 180
           TISVDLDLDPPQYSP VRNGAPASVIERLMDEKYDD NGREEMGDQCCVCYEDLNCEREE
Sbjct: 121 TISVDLDLDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDLNCEREE 180

Query: 181 EKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR 219
           EKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR
Sbjct: 181 EKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR 218

[Close]

BLAST of Cmc04g0089961 vs. ExPASy TrEMBL
Match: A0A1S3CR16 (E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC103503717 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 1.8e-119
Identity = 216/218 (99.08%), Postives = 216/218 (99.08%), Query Frame = 0


Query: 1   MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 60
           MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF
Sbjct: 1   MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 60

Query: 61  PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120
           PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY
Sbjct: 61  PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120

Query: 121 TISVDLDLDPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREE 180
           TISVDLDLDPPQYSP VRNGAPASVIERLMDEKYDD NGREEMGDQCCVCYEDLNCEREE
Sbjct: 121 TISVDLDLDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDLNCEREE 180

Query: 181 EKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR 219
           EKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR
Sbjct: 181 EKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR 218

[Close]

BLAST of Cmc04g0089961 vs. ExPASy TrEMBL
Match: A0A0A0LHI3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.1e-97
Identity = 184/218 (84.40%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MSSTTTLSLECCIHSSVATTADEQLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 60
           MSSTT LSL+CC+  S+ TTAD+QLVEIRLRR+SKLVSP SNQ IQQTFPT IS+ALFHF
Sbjct: 1   MSSTTNLSLDCCVR-SIPTTADKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHF 60

Query: 61  PLPELELENPPFFFHDLLLQFLSPADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120
           PLPELELENP   FHD LLQFLSPADS AIFHNISSFALQLAAGNLNLNFHLIATVDLLY
Sbjct: 61  PLPELELENPS-LFHDFLLQFLSPADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLY 120

Query: 121 TISVDLDLDPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREE 180
           TIS++L+L+PPQYSPPVRNG PASV+ERLM+EKYDD NG E MG QCCVCYEDLNCEREE
Sbjct: 121 TISINLNLNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREE 180

Query: 181 EKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRREFR 219
           EK EE TRIPCGHVYHK CILKWLN+NNSCPLCR EFR
Sbjct: 181 EK-EEATRIPCGHVYHKSCILKWLNVNNSCPLCRSEFR 215

[Close]

BLAST of Cmc04g0089961 vs. ExPASy TrEMBL
Match: A0A0A0LRB0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 7.3e-52
Identity = 129/226 (57.08%), Postives = 150/226 (66.37%), Query Frame = 0


Query: 1   MSSTTTLSLECCI----HSSVATTADE-QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISD 60
           MSS TT S  C I    + S AT     Q VE+RL  +S+LV   S+QI+QQT P  ISD
Sbjct: 1   MSSPTTFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISD 60

Query: 61  ALFHFPLPELELENPPFFFHDLLLQFL-----SPADSTAIFHNISSFALQLAAGNLNLNF 120
            L  FPL   ELE+PPF  H  L +FL     S A   AIF  ISSFA QL AGNLN NF
Sbjct: 61  TLIRFPL--RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNF 120

Query: 121 HLIATVDLLYTISVDLDLDPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVC 180
           H+IA +D +YT  V  DLDP + +  VR GAP S IERLM EKYD  NG EEM D+C VC
Sbjct: 121 HIIAALDFVYTHWV--DLDPAEDAAAVRQGAPRSAIERLMKEKYDG-NGGEEMEDECSVC 180

Query: 181 YEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRRE 217
           YEDL+   + EKE+EV+RIPCGH++HK CILKWL I+NSCPLCR E
Sbjct: 181 YEDLH--GKTEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGE 219

[Close]

BLAST of Cmc04g0089961 vs. ExPASy TrEMBL
Match: A0A0A0L3Z2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 5.2e-50
Identity = 127/232 (54.74%), Postives = 153/232 (65.95%), Query Frame = 0


Query: 1   MSSTTTLSLECCIH----SSVATTADE-QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISD 60
           MS   T S +C I     SS+AT     Q V++RLR + +LV   S QI+QQT PT ISD
Sbjct: 1   MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISD 60

Query: 61  ALFHFPLPELELENPPFFFHDLLLQFLSPADST-----AIFHNISSFALQL---AAGNLN 120
            L  F L   ELE+PPF  +  L +FLS  D +     AIF+NISSFA Q+   A  N+N
Sbjct: 61  TLIPFSL--WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNIN 120

Query: 121 LNFHLIATVDLLYTISVDLDLDPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMG-DQ 180
           +NFH+IA VD++YT  V  DLDP + +P VR GA  SVIER+M EKYD   G E+ G DQ
Sbjct: 121 VNFHIIADVDIVYTHWV--DLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQ 180

Query: 181 CCVCYEDL--NCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRRE 217
           C VCYE L    E E EKE+EV+RIPCGH+YHK CILKWL I+NSCPLCRRE
Sbjct: 181 CSVCYEQLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRE 228

[Close]

BLAST of Cmc04g0089961 vs. TAIR 10
Match: AT5G37200.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-10
Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 140 GAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREEEKEEEVTRIP-CGHVYHKY 199
           GA   V  RL++E+  +    EE  + C +C E  +     E  E++ R+P C H++H+ 
Sbjct: 132 GASGEVFHRLVEEQRVESADLEEEDETCSICIEKFS-----ESHEDIIRVPDCLHLFHQG 191

Query: 200 CILKWLNINNSCPLCRR 216
           C+ +WL + NSCPLCR+
Sbjct: 192 CLFEWLGLQNSCPLCRK 203

[Close]

BLAST of Cmc04g0089961 vs. TAIR 10
Match: AT5G37280.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.1e-10
Identity = 28/78 (35.90%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 139 NGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREEEKEEEVTRIP-CGHVYHK 198
           +GAP  V +RL++E+  + +   +  + C +C+E L+    E     + ++P C H +H+
Sbjct: 133 SGAPVDVFQRLLEEQTVEPS--MDSDESCSICFEKLSDSLSETYHNSIIQMPKCLHSFHQ 192

Query: 199 YCILKWLNINNSCPLCRR 216
            CI KW+   NSCPLCRR
Sbjct: 193 KCIFKWIGRQNSCPLCRR 208

[Close]

BLAST of Cmc04g0089961 vs. TAIR 10
Match: AT1G45180.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-10
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 144 SVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREEEKEEEVTRIPCGHVYHKYCILKW 203
           ++  RL  +KY       +  + CCVC E      E ++EEE+ R+ CGH +H  CI +W
Sbjct: 569 TISNRLKQQKYKSSTRSSQEVEPCCVCQE------EYKEEEEIGRLECGHDFHSQCIKEW 628

Query: 204 LNINNSCPLCR 215
           L   N CP+C+
Sbjct: 629 LKQKNLCPICK 633

[Close]

BLAST of Cmc04g0089961 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-10
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 129 DPPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREEEKEEEVTR 188
           DP +Y  P    A  S I+ L   K   +  + EM +QC VC +      E E   +V +
Sbjct: 182 DPNRYGTP---PASKSAIDALPTVKVTKDMLKSEM-NQCAVCMD------EFEDGSDVKQ 241

Query: 189 IPCGHVYHKYCILKWLNINNSCPLCRRE 217
           +PC HV+H+ C+L WL ++NSCP+CR E
Sbjct: 242 MPCKHVFHQDCLLPWLELHNSCPVCRFE 259

[Close]

BLAST of Cmc04g0089961 vs. TAIR 10
Match: AT1G60360.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 8.9e-10
Identity = 32/87 (36.78%), Postives = 44/87 (50.57%), Query Frame = 0


Query: 130 PPQYSPPVRNGAPASVIERLMDEKYDDENGREEMGDQCCVCYEDLNCEREEEKEEEVTRI 189
           PP  S P  N  P+         K   ++   +M  QC VC E+           + T +
Sbjct: 196 PPPASEPTINSLPS--------VKITPQHLTNDM-SQCTVCMEEFIV------GGDATEL 255

Query: 190 PCGHVYHKYCILKWLNINNSCPLCRRE 217
           PC H+YHK CI+ WL +NNSCP+CRR+
Sbjct: 256 PCKHIYHKDCIVPWLRLNNSCPICRRD 267

The following BLAST results are available for this feature:

BLAST of Cmc04g0089961 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466247.1	3.8e-119	99.08	PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo] >KAA0038...	[more]
XP_011652885.1	2.4e-97	84.40	RING-H2 finger protein ATL66 [Cucumis sativus] >KGN60202.1 hypothetical protein ...	[more]
XP_011650219.1	1.5e-51	57.08	RING-H2 finger protein ATL16 [Cucumis sativus] >KGN63362.1 hypothetical protein ...	[more]
XP_031740500.1	1.1e-49	54.74	E3 ubiquitin-protein ligase At1g63170-like [Cucumis sativus]	[more]
XP_023006826.1	3.4e-43	52.05	E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima]	[more]

BLAST of Cmc04g0089961 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CH30	1.1e-09	39.77	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q9Y7K6	5.6e-09	32.14	Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strai...	[more]
Q8LPN7	7.4e-09	38.64	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9VHI7	2.8e-08	40.00	E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1...	[more]
Q9Y4L5	1.1e-07	42.59	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2	[more]

BLAST of Cmc04g0089961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T784	1.8e-119	99.08	E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CR16	1.8e-119	99.08	E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A0A0LHI3	1.1e-97	84.40	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 P...	[more]
A0A0A0LRB0	7.3e-52	57.08	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G432790 P...	[more]
A0A0A0L3Z2	5.2e-50	54.74	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 P...	[more]

BLAST of Cmc04g0089961 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37200.1	1.4e-10	36.36	RING/U-box superfamily protein	[more]
AT5G37280.1	3.1e-10	35.90	RING/U-box superfamily protein	[more]
AT1G45180.1	5.2e-10	36.62	RING/U-box superfamily protein	[more]
AT3G19950.1	5.2e-10	38.64	RING/U-box superfamily protein	[more]
AT1G60360.1	8.9e-10	36.78	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 167..213 e-value: 6.6E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 165..214 e-value: 1.3E-10 score: 41.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 167..214 score: 12.563043
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 133..218 e-value: 2.4E-19 score: 70.8
None	No IPR available	PANTHER	PTHR45931:SF9	E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKE	coord: 65..216
None	No IPR available	PANTHER	PTHR45931	SI:CH211-59O9.10	coord: 65..216
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 166..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0089961.1	Cmc04g0089961.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity