Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCAAACCCAATGCCGCGTTCTTTAAATTTTCAAATCCCAACAATTTCTCTTAAACCCGAAAACCCCCCAATATGGCCAACTTTCACACCTCTAAATCCGATTACGACCACCACCACCACCACCGCCGTCACCGCAACCACCACCACTGCAAACACCATCCAAATCACCACCAATCTCCTGGTGTTTGTTCTCTATGTTTAACCGAAAAGCTCTCGCGAATTCTCTCCACCGCCGGTTCATCGCGTAATAAAATCTCTAGTTCTCTTTCTTCTTCTTGTTCCTCTTCTTATTACTCCTCTTGTTCCTCTTCTTCTTCTTCTTGTTCTTCTTCGCCGAAGCCTTACAATTATTACAATTCGGATAATCATCGTCGTCGTAAGAAGGCTTTTGTGTTGTTTTCTGCGTCTTCGATCTTTAAGAAGAGTAAATCGATGGCGAGATTGAAACGAGGAACGACAACGGAGAGTGATTGTGGAAAGAAGAGTAACAATAATGACTTAGGGTTTTGGTCGAGGTTTCTGAATCGACCGAGACCGAAGAGGATGGAATTTCAGGATGTTTTGATGCGTTCGAGAACTGTTGTACACAGGAACGTGCATGGATGAACATAATCGTCTTTTGAAGATTCGCTAAGATTTTATGATTATTTCTTCATTTTTTTGTTTCCACTTAAACAGATGCAATTAGATCGTTGGGGTTTGAGAAGAAGACTTTTGTTTGTGTAAATATGTAATTAAAATCATACGGATCAGAATTGGTGAAGATTGAAGAAAAGCACTTACGATTATATCTATGATTATTGTTTTTTGGAATTTTAATTTTGGCTATTAATTAATTTAATTCTCAATATATATATATATATACACATAAACAAAATACTTATGATAATGTATTGTATAAACCAAATTAAACATAATTATAATTAAAATTTGGA
mRNA sequence
CACCAAACCCAATGCCGCGTTCTTTAAATTTTCAAATCCCAACAATTTCTCTTAAACCCGAAAACCCCCCAATATGGCCAACTTTCACACCTCTAAATCCGATTACGACCACCACCACCACCACCGCCGTCACCGCAACCACCACCACTGCAAACACCATCCAAATCACCACCAATCTCCTGGTGTTTGTTCTCTATGTTTAACCGAAAAGCTCTCGCGAATTCTCTCCACCGCCGGTTCATCGCGTAATAAAATCTCTAGTTCTCTTTCTTCTTCTTGTTCCTCTTCTTATTACTCCTCTTGTTCCTCTTCTTCTTCTTCTTGTTCTTCTTCGCCGAAGCCTTACAATTATTACAATTCGGATAATCATCGTCGTCGTAAGAAGGCTTTTGTGTTGTTTTCTGCGTCTTCGATCTTTAAGAAGAGTAAATCGATGGCGAGATTGAAACGAGGAACGACAACGGAGAGTGATTGTGGAAAGAAGAGTAACAATAATGACTTAGGGTTTTGGTCGAGGTTTCTGAATCGACCGAGACCGAAGAGGATGGAATTTCAGGATGTTTTGATGCGTTCGAGAACTGTTGTACACAGGAACGTGCATGGATGAACATAATCGTCTTTTGAAGATTCGCTAAGATTTTATGATTATTTCTTCATTTTTTTGTTTCCACTTAAACAGATGCAATTAGATCGTTGGGGTTTGAGAAGAAGACTTTTGTTTGTGTAAATATGTAATTAAAATCATACGGATCAGAATTGGTGAAGATTGAAGAAAAGCACTTACGATTATATCTATGATTATTGTTTTTTGGAATTTTAATTTTGGCTATTAATTAATTTAATTCTCAATATATATATATATATACACATAAACAAAATACTTATGATAATGTATTGTATAAACCAAATTAAACATAATTATAATTAAAATTTGGA
Coding sequence (CDS)
ATGGCCAACTTTCACACCTCTAAATCCGATTACGACCACCACCACCACCACCGCCGTCACCGCAACCACCACCACTGCAAACACCATCCAAATCACCACCAATCTCCTGGTGTTTGTTCTCTATGTTTAACCGAAAAGCTCTCGCGAATTCTCTCCACCGCCGGTTCATCGCGTAATAAAATCTCTAGTTCTCTTTCTTCTTCTTGTTCCTCTTCTTATTACTCCTCTTGTTCCTCTTCTTCTTCTTCTTGTTCTTCTTCGCCGAAGCCTTACAATTATTACAATTCGGATAATCATCGTCGTCGTAAGAAGGCTTTTGTGTTGTTTTCTGCGTCTTCGATCTTTAAGAAGAGTAAATCGATGGCGAGATTGAAACGAGGAACGACAACGGAGAGTGATTGTGGAAAGAAGAGTAACAATAATGACTTAGGGTTTTGGTCGAGGTTTCTGAATCGACCGAGACCGAAGAGGATGGAATTTCAGGATGTTTTGATGCGTTCGAGAACTGTTGTACACAGGAACGTGCATGGATGA
Protein sequence
MANFHTSKSDYDHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRNKISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSKSMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG
Homology
BLAST of Cmc04g0089651 vs. NCBI nr
Match:
XP_008466205.1 (PREDICTED: SKI/DACH domain-containing protein 1 [Cucumis melo])
HSP 1 Score: 330.5 bits (846), Expect = 9.0e-87
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0
Query: 1 MANFHTSKSDYD-HHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
MANFHTSKSDYD HHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN
Sbjct: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
Query: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK
Sbjct: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
Query: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178
SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG
Sbjct: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178
BLAST of Cmc04g0089651 vs. NCBI nr
Match:
XP_011652564.1 (uncharacterized protein LOC105435032 [Cucumis sativus])
HSP 1 Score: 241.5 bits (615), Expect = 5.5e-60
Identity = 142/179 (79.33%), Postives = 153/179 (85.47%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRNK 60
MANFH+SKSD D H R+ HHHC+ HPNHHQSPGVCSLCLTEKLSRI++ A SSRNK
Sbjct: 1 MANFHSSKSDVD--HRRTRNHRHHHCQRHPNHHQSPGVCSLCLTEKLSRIIAPAASSRNK 60
Query: 61 ISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSKS 120
IS+SLSSS SSSYYSSCSS+SSS SSSPK Y YYNSDNH R+K +FSASSIFKKSK+
Sbjct: 61 ISNSLSSSSSSSYYSSCSSASSSSSSSPKLYGYYNSDNHHPRRKTAFVFSASSIFKKSKT 120
Query: 121 MARLKRG-TTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHR-NVHG 178
MARLKRG TTTESDCGKKSNN DLGFWSRFLNR R KRMEFQ+VLMRSRTVV R NVHG
Sbjct: 121 MARLKRGITTTESDCGKKSNNTDLGFWSRFLNRHRLKRMEFQEVLMRSRTVVQRNNVHG 177
BLAST of Cmc04g0089651 vs. NCBI nr
Match:
KAE8651391.1 (hypothetical protein Csa_002099 [Cucumis sativus])
HSP 1 Score: 241.5 bits (615), Expect = 5.5e-60
Identity = 142/179 (79.33%), Postives = 153/179 (85.47%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRNK 60
MANFH+SKSD D H R+ HHHC+ HPNHHQSPGVCSLCLTEKLSRI++ A SSRNK
Sbjct: 125 MANFHSSKSDVD--HRRTRNHRHHHCQRHPNHHQSPGVCSLCLTEKLSRIIAPAASSRNK 184
Query: 61 ISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSKS 120
IS+SLSSS SSSYYSSCSS+SSS SSSPK Y YYNSDNH R+K +FSASSIFKKSK+
Sbjct: 185 ISNSLSSSSSSSYYSSCSSASSSSSSSPKLYGYYNSDNHHPRRKTAFVFSASSIFKKSKT 244
Query: 121 MARLKRG-TTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHR-NVHG 178
MARLKRG TTTESDCGKKSNN DLGFWSRFLNR R KRMEFQ+VLMRSRTVV R NVHG
Sbjct: 245 MARLKRGITTTESDCGKKSNNTDLGFWSRFLNRHRLKRMEFQEVLMRSRTVVQRNNVHG 301
BLAST of Cmc04g0089651 vs. NCBI nr
Match:
XP_038899400.1 (uncharacterized protein LOC120086706 [Benincasa hispida])
HSP 1 Score: 178.3 bits (451), Expect = 5.7e-41
Identity = 127/181 (70.17%), Postives = 134/181 (74.03%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILS--TAGSSR 60
MANFH SKSDYDHH R +H CK HP HHQSPGVCSLCLTEKLSRILS T SS
Sbjct: 1 MANFHKSKSDYDHH-----RRRNHCCKRHPKHHQSPGVCSLCLTEKLSRILSAATTTSSS 60
Query: 61 NKISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKS 120
K S SLSSS SSSYYSS SSSSS SSP Y +YN+D RRK AFV FSASSIFKKS
Sbjct: 61 RKTSDSLSSSYSSSYYSSASSSSS--CSSPNLY-HYNTD---RRKTAFV-FSASSIFKKS 120
Query: 121 KSMARL--KRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVH 178
KSMA + + TES+ KKSN LGFWSRFLNRPR KRMEFQDVLM SRT+V RNVH
Sbjct: 121 KSMAAIVPRLRGRTESESEKKSN---LGFWSRFLNRPRRKRMEFQDVLMHSRTIVERNVH 166
BLAST of Cmc04g0089651 vs. NCBI nr
Match:
KAG7024556.1 (hypothetical protein SDJN02_13373, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 166.4 bits (420), Expect = 2.2e-37
Identity = 117/180 (65.00%), Postives = 131/180 (72.78%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRNK 60
MANFH SKSDYD + CK HP HHQSPGVCSLCL EKLS+I+ST S K
Sbjct: 1 MANFHRSKSDYD---------DRRRCKRHPKHHQSPGVCSLCLAEKLSQIVST--KSSRK 60
Query: 61 ISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSKS 120
+S SLSSSCSSSYYSS +SS SSCSS PY YN+D R+KAFV FSASSIFKKS+S
Sbjct: 61 VSDSLSSSCSSSYYSS-ASSCSSCSSPNPPYG-YNTD----RRKAFV-FSASSIFKKSRS 120
Query: 121 MA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178
MA RL+RG TESD GK NN+LGFWS+ L RPR K MEF++VLM SRTVV R+VHG
Sbjct: 121 MAFAPRLRRG--TESDSGK---NNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG 157
BLAST of Cmc04g0089651 vs. ExPASy TrEMBL
Match:
A0A1S3CQP1 (SKI/DACH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103503688 PE=4 SV=1)
HSP 1 Score: 330.5 bits (846), Expect = 4.3e-87
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0
Query: 1 MANFHTSKSDYD-HHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
MANFHTSKSDYD HHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN
Sbjct: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
Query: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK
Sbjct: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
Query: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178
SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG
Sbjct: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178
BLAST of Cmc04g0089651 vs. ExPASy TrEMBL
Match:
A0A0A0LJL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889870 PE=4 SV=1)
HSP 1 Score: 241.5 bits (615), Expect = 2.7e-60
Identity = 142/179 (79.33%), Postives = 153/179 (85.47%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRNK 60
MANFH+SKSD D H R+ HHHC+ HPNHHQSPGVCSLCLTEKLSRI++ A SSRNK
Sbjct: 1 MANFHSSKSDVD--HRRTRNHRHHHCQRHPNHHQSPGVCSLCLTEKLSRIIAPAASSRNK 60
Query: 61 ISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSKS 120
IS+SLSSS SSSYYSSCSS+SSS SSSPK Y YYNSDNH R+K +FSASSIFKKSK+
Sbjct: 61 ISNSLSSSSSSSYYSSCSSASSSSSSSPKLYGYYNSDNHHPRRKTAFVFSASSIFKKSKT 120
Query: 121 MARLKRG-TTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHR-NVHG 178
MARLKRG TTTESDCGKKSNN DLGFWSRFLNR R KRMEFQ+VLMRSRTVV R NVHG
Sbjct: 121 MARLKRGITTTESDCGKKSNNTDLGFWSRFLNRHRLKRMEFQEVLMRSRTVVQRNNVHG 177
BLAST of Cmc04g0089651 vs. ExPASy TrEMBL
Match:
A0A6J1IHL9 (uncharacterized protein LOC111476165 OS=Cucurbita maxima OX=3661 GN=LOC111476165 PE=4 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 1.9e-37
Identity = 118/180 (65.56%), Postives = 130/180 (72.22%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRNK 60
MANFH SKSDYD + CK HP HHQSPGVCSLCL EKLS+I+S +S K
Sbjct: 1 MANFHKSKSDYD---------DRRRCKRHPKHHQSPGVCSLCLAEKLSQIVS--ATSSRK 60
Query: 61 ISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSKS 120
+S SLSSSCSSSYYSS +SS SSCSS PY YN+D R+KAFV FSASSIFKKS+S
Sbjct: 61 VSDSLSSSCSSSYYSS-ASSCSSCSSPNPPYG-YNTD----RRKAFV-FSASSIFKKSRS 120
Query: 121 MA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178
MA RLKR TESD GK SN LGFWSRFL RPR K MEF++VLM SRTVV R+VHG
Sbjct: 121 MAFAPRLKR--ETESDSGKNSN---LGFWSRFLRRPRRKIMEFEEVLMHSRTVVQRDVHG 157
BLAST of Cmc04g0089651 vs. ExPASy TrEMBL
Match:
A0A6J1FD38 (uncharacterized protein LOC111443018 OS=Cucurbita moschata OX=3662 GN=LOC111443018 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 2.4e-37
Identity = 116/180 (64.44%), Postives = 131/180 (72.78%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRNK 60
MANFH SKSDYD + CK HP HHQSPGVCSLCL EKLS+I+ST S K
Sbjct: 1 MANFHRSKSDYD---------DRRRCKRHPKHHQSPGVCSLCLAEKLSQIVST--KSSRK 60
Query: 61 ISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSKS 120
+S SLSSSCS+SYYSS +SS SSCSS PY YN+D R+KAFV FSASSIFKKS+S
Sbjct: 61 VSDSLSSSCSTSYYSS-ASSCSSCSSPNPPYG-YNTD----RRKAFV-FSASSIFKKSRS 120
Query: 121 MA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178
MA RL+RG TESD GK NN+LGFWS+ L RPR K MEF++VLM SRTVV R+VHG
Sbjct: 121 MAFAPRLRRG--TESDSGK---NNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVHG 157
BLAST of Cmc04g0089651 vs. ExPASy TrEMBL
Match:
A0A6J1FKF2 (uncharacterized protein LOC111446076 OS=Cucurbita moschata OX=3662 GN=LOC111446076 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 2.7e-28
Identity = 110/183 (60.11%), Postives = 122/183 (66.67%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRNK 60
MAN H SKSDYD RRHR CK HP H QSPGVCSLCLTEKLS+ILS SSR K
Sbjct: 1 MANLHKSKSDYD---DLRRHRRCCCCKRHPKHRQSPGVCSLCLTEKLSQILSATTSSR-K 60
Query: 61 ISSSLSSSCSSSY-YSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
IS SLSSS S SY Y S SS SSCSS +PY+ KA +ASSI+KKS+
Sbjct: 61 ISDSLSSSSSDSYSYYSSVSSCSSCSSPNRPYD-----------KA----TASSIYKKSR 120
Query: 121 SMA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRT--VVHRN 178
SMA R +RG T+SD GKKS+ LGFWSRFLNRPR KRME ++ LM SR+ VV N
Sbjct: 121 SMAFASRFRRG--TDSDSGKKSH---LGFWSRFLNRPRRKRMELEEALMHSRSSAVVQGN 159
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008466205.1 | 9.0e-87 | 99.44 | PREDICTED: SKI/DACH domain-containing protein 1 [Cucumis melo] | [more] |
XP_011652564.1 | 5.5e-60 | 79.33 | uncharacterized protein LOC105435032 [Cucumis sativus] | [more] |
KAE8651391.1 | 5.5e-60 | 79.33 | hypothetical protein Csa_002099 [Cucumis sativus] | [more] |
XP_038899400.1 | 5.7e-41 | 70.17 | uncharacterized protein LOC120086706 [Benincasa hispida] | [more] |
KAG7024556.1 | 2.2e-37 | 65.00 | hypothetical protein SDJN02_13373, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3CQP1 | 4.3e-87 | 99.44 | SKI/DACH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103503688 PE=... | [more] |
A0A0A0LJL6 | 2.7e-60 | 79.33 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889870 PE=4 SV=1 | [more] |
A0A6J1IHL9 | 1.9e-37 | 65.56 | uncharacterized protein LOC111476165 OS=Cucurbita maxima OX=3661 GN=LOC111476165... | [more] |
A0A6J1FD38 | 2.4e-37 | 64.44 | uncharacterized protein LOC111443018 OS=Cucurbita moschata OX=3662 GN=LOC1114430... | [more] |
A0A6J1FKF2 | 2.7e-28 | 60.11 | uncharacterized protein LOC111446076 OS=Cucurbita moschata OX=3662 GN=LOC1114460... | [more] |
Match Name | E-value | Identity | Description | |