Cmc04g0088571 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0088571
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon-derived protein PEG10, putative
LocationCMiso1.1chr04: 1143338 .. 1144286 (+)
RNA-Seq ExpressionCmc04g0088571
SyntenyCmc04g0088571
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCATCTTTTCTCTTTTCTGTATATCATTCGCATAGAAACGTGAGAAAAACAGGACGGAGCATGAATGTGTGTGTGTGTGTGTATATATATGAACTGCCCAACCCAAAATTTCAAATAACTCGATACTAAAACTGCATTGCAAAAATTTTCTTGTAGTGTTACGACAGATTACCTTCATAATTTCTTTCGATCAGTTGTAGTTGTAGCAGAAATCATGGAGAACGTTGAAGCGGAATCCAAAGACGAAGCAATGCGAGGATCCAAAACCGCCATTCGATGTGCAAAAGCAGCTTTTCTACTTTCTTCACTCAAATCCTCCCAAAATCGCCAACTCAGAGCCACTGCCCATGAACAAGCCAAGGTACTCAAAGTCACAATTTACGATCACTATATAATTAATCTATCCTAACTTGTCTATATATATATATATCGCTCTGGCTTACTTATTTTTTTTGATTCGCGATTTTGATAAATTAAAACGTCGATCGATTACCTGTCAGGAGAGGAAGATGCTAAGGAAAACTGTGGGAGATTTGAAGATCCAGTTGGCTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGGTTATCTCTCTTTCGAGTTTATCCCTTTTTGTTGCCTTCAAATTTGTTTGAGTTCTGATGGAATGATCGATGGTAAGACTACGGAGTTTGCTTGAGGAAATTAAACAACCCTAACCAGTTCATGAATTACAACACTGGATTGATTCATCGTCGTCTTCCATTGTTGTTTGTAGTTTTAGAGTTCTTAGATTTCGAAGGCTTCAGAGAACTACTTCGTTCCAACTGAAATCGTTTTTTTCAAGGGGGAAAGAGAAACTTCAATACAATTTGGAAGTGTAATGCTTCGAACGAATTGTTATATTAATAAAAGTTTTTGATATTCCATATA

mRNA sequence

TTCATCTTTTCTCTTTTCTGTATATCATTCGCATAGAAACTTGTAGCAGAAATCATGGAGAACGTTGAAGCGGAATCCAAAGACGAAGCAATGCGAGGATCCAAAACCGCCATTCGATGTGCAAAAGCAGCTTTTCTACTTTCTTCACTCAAATCCTCCCAAAATCGCCAACTCAGAGCCACTGCCCATGAACAAGCCAAGGAGAGGAAGATGCTAAGGAAAACTGTGGGAGATTTGAAGATCCAGTTGGCTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGGTTATCTCTCTTTCGAGTTTATCCCTTTTTGTTGCCTTCAAATTTGTTTGAGTTCTGATGGAATGATCGATGGTAAGACTACGGAGTTTGCTTGAGGAAATTAAACAACCCTAACCAGTTCATGAATTACAACACTGGATTGATTCATCGTCGTCTTCCATTGTTGTTTGTAGTTTTAGAGTTCTTAGATTTCGAAGGCTTCAGAGAACTACTTCGTTCCAACTGAAATCGTTTTTTTCAAGGGGGAAAGAGAAACTTCAATACAATTTGGAAGTGTAATGCTTCGAACGAATTGTTATATTAATAAAAGTTTTTGATATTCCATATA

Coding sequence (CDS)

ATGGAGAACGTTGAAGCGGAATCCAAAGACGAAGCAATGCGAGGATCCAAAACCGCCATTCGATGTGCAAAAGCAGCTTTTCTACTTTCTTCACTCAAATCCTCCCAAAATCGCCAACTCAGAGCCACTGCCCATGAACAAGCCAAGGAGAGGAAGATGCTAAGGAAAACTGTGGGAGATTTGAAGATCCAGTTGGCTAGGGAGCGTCTGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGGTTATCTCTCTTTCGAGTTTATCCCTTTTTGTTGCCTTCAAATTTGTTTGA

Protein sequence

MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGDLKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV
Homology
[Close]
BLAST of Cmc04g0088571 vs. NCBI nr
Match: KAA0038606.1 (putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31205.1 putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
           MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD
Sbjct: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 106
           LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV
Sbjct: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 105

[Close]
BLAST of Cmc04g0088571 vs. NCBI nr
Match: XP_011652624.1 (uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical protein Csa_001987 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 3.3e-36
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 0 

Query: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
           ME+VEAE+K+EAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRAT HEQAKE+KML KTVGD
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAF 103
           LKIQLARER+RNKRIKLCGLMEFVLQLLLV+SLSSL LF AF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]
BLAST of Cmc04g0088571 vs. NCBI nr
Match: XP_022940284.1 (uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 uncharacterized protein LOC111788615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.9 bits (346), Expect = 5.1e-29
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 0 

Query: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
           ME VEAES+DEAMR SKTA RCAKAAFL+SS KS QNR LRA+  EQAKE++ LRK VGD
Sbjct: 1   MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGD 60

Query: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 106
           LKI+LA ER RNKRIKLCGLMEFVLQLLLVISLSS  LF+AFK +
Sbjct: 61  LKIELAMERRRNKRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

[Close]
BLAST of Cmc04g0088571 vs. NCBI nr
Match: XP_022138206.1 (uncharacterized protein LOC111009432 [Momordica charantia])

HSP 1 Score: 137.9 bits (346), Expect = 5.1e-29
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
           ME VEAES+DEAMR S+TA RCAKAAF+LSSLKSSQN  LRAT +E  KE++ LRKT+GD
Sbjct: 1   MEKVEAESRDEAMR-SRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGD 60

Query: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFK 104
           LK++LARERLRNKRIKLCGLMEFVLQ+LLVI+LSS   F+AFK
Sbjct: 61  LKVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFFFIAFK 102

[Close]
BLAST of Cmc04g0088571 vs. NCBI nr
Match: KAG7031715.1 (hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-28
Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 0 

Query: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
           ME VEAES+DEAMR SKTA RCAKAAFL+SS KS QNR LRA+  E+AKE++ LRK VGD
Sbjct: 1   MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGD 60

Query: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 106
           LKI+LA ER RN+RIKLCGLMEFVLQLLLVISLSS  LF+AFK +
Sbjct: 61  LKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

[Close]
BLAST of Cmc04g0088571 vs. ExPASy TrEMBL
Match: A0A5D3E7E0 (Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004900 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.1e-43
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
           MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD
Sbjct: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 106
           LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV
Sbjct: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 105

[Close]
BLAST of Cmc04g0088571 vs. ExPASy TrEMBL
Match: A0A0A0LJY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.6e-36
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 0 

Query: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
           ME+VEAE+K+EAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRAT HEQAKE+KML KTVGD
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAF 103
           LKIQLARER+RNKRIKLCGLMEFVLQLLLV+SLSSL LF AF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]
BLAST of Cmc04g0088571 vs. ExPASy TrEMBL
Match: A0A6J1C920 (uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009432 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
           ME VEAES+DEAMR S+TA RCAKAAF+LSSLKSSQN  LRAT +E  KE++ LRKT+GD
Sbjct: 1   MEKVEAESRDEAMR-SRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGD 60

Query: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFK 104
           LK++LARERLRNKRIKLCGLMEFVLQ+LLVI+LSS   F+AFK
Sbjct: 61  LKVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFFFIAFK 102

[Close]
BLAST of Cmc04g0088571 vs. ExPASy TrEMBL
Match: A0A6J1FJM5 (uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC111445952 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 0 

Query: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
           ME VEAES+DEAMR SKTA RCAKAAFL+SS KS QNR LRA+  EQAKE++ LRK VGD
Sbjct: 1   MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGD 60

Query: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 106
           LKI+LA ER RNKRIKLCGLMEFVLQLLLVISLSS  LF+AFK +
Sbjct: 61  LKIELAMERRRNKRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

[Close]
BLAST of Cmc04g0088571 vs. ExPASy TrEMBL
Match: A0A6A1UUX9 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G028350 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.5e-15
Identity = 53/101 (52.48%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60
           +E +E E+K EA++ SK  IRCAKAAFLLS+LKS  N  + +T  +Q +E +M+R+ + +
Sbjct: 3   IEGLEMETKHEALK-SKMLIRCAKAAFLLSALKSFPNLSMNSTTDDQDEEEEMVRREIEE 62

Query: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVA 102
           LK++LARERL+NK++KLCGLME VLQ+ +V+SLS+     A
Sbjct: 63  LKMELARERLKNKKMKLCGLMEMVLQVAVVLSLSTFFFMFA 102

[Close]
BLAST of Cmc04g0088571 vs. TAIR 10
Match: AT1G78172.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 0 

Query: 8  SKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGDLKIQLAR 67
          SKDE  R   TAIRCA+A  LL SL SS  R + +   +Q  E+   R+ + DL+ +L  
Sbjct: 3  SKDEFSR-DLTAIRCARATMLLYSLASS--RTIDSAGEKQ--EKGETRREIEDLRRKLTM 62

Query: 68 ERLRNKRIKLCGLMEFVLQLLLVISLSSLSL 99
           +++  RIKLCGLME +L + LV+ LS+  L
Sbjct: 63 VKIKMNRIKLCGLMELLLLVFLVLLLSTFFL 88

The following BLAST results are available for this feature:
BLAST of Cmc04g0088571 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038606.11.1e-42100.00putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31... [more]
XP_011652624.13.3e-3690.20uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical ... [more]
XP_022940284.15.1e-2978.10uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 unchar... [more]
XP_022138206.15.1e-2976.70uncharacterized protein LOC111009432 [Momordica charantia][more]
KAG7031715.12.5e-2876.19hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Cmc04g0088571 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc04g0088571 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E7E05.1e-43100.00Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0LJY11.6e-3690.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1[more]
A0A6J1C9202.5e-2976.70uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1FJM52.5e-2978.10uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC1114459... [more]
A0A6A1UUX94.5e-1552.48Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G028350 PE=4 SV=1[more]
BLAST of Cmc04g0088571 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G78172.12.2e-0643.96unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0088571.1Cmc04g0088571.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane