Cmc04g0087421 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0087421
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDNA-directed RNA polymerase II subunit RPB2
LocationCMiso1.1chr04: 333043 .. 336172 (+)
RNA-Seq ExpressionCmc04g0087421
SyntenyCmc04g0087421
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGAGTTATAAAAAATAATAAATTTGACAAGCTATTTAAAAAATATAACAAAATTTCTAATAATATCAATAACGGTGACATTGAAGTTTATATTTTAGTTTATTTTGCTATCTTTAAAAATGTTATATTTTTTTCCCTAATAAATTTAACACGTGAGAGTTATGGATGTAAGAATAAAAAAATTGACTTTTTTGGTCAAAGTAAAGCGATGGGTACTATAAGCAAAGGGCCTATGCTTCTCGAAGCCCAAGCCAGTCCATTTCCTAATGGGCCCAATCGACTTTTGACTTTTATGGGCCGAAGTGTCAAAAGCCGAAAACGATGGTCTCTGTCTGGGCCTAAACAAGTGGAAGCCCAAGAAATGAAAGAACCTCCGTGTTTCTTCTTCTTCTCTGTATCGGCGGAGGAATTCGGTGAGAGAGAGAATTGAAATGGGGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCCGGAGCCTTCTCTGCGATTTCATTCTGGTGAGATTTTACTTCTCTTTCTTCCACTTACTTTTCTTGATATTCCTAATCTAATTCATCTTCCTCCATTTTTTTTTTGTCAGGTATGGTTTCATGTTTGGAAGAGAGTCCGCTCGTAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGAGGAGTCTCTAAATCCGATTCTTCTTCTGAAACTCCTCAGTCTTGATTTGGTACCTTATGTCCTTTTCCTCGATACGCTTAGGTAATGATTTTGGATAGGATTGTGTTGGAGAAGTCTATTGTGGATTAATGAACGAGAAATTTCACCTTCTGGAACAAGGAGATCTGTAGTTTTTGATTTGAGGCGTTTTGTGAAGTATCGATTAACTTAGATATTTGGAACCCATATCGATCTTGTACACAGATCAAGGCGTTTTGTGGGTCTCTCTTCAATCCTTCCATTTCTTTTTTGTTATTCTCATCAAATTTGCAAATTTTATTTTAGATTTTTTCTTCACGTCGATGTCTTTTTCTATTTTGGACTCACTCTCTCTGAATTACGGTCGATCTTCTTCCATCTTTGATTCCAGAAAGAGACCAAACCAAGACGAATGAAATGGTTCACTTGAAACCGTGACATGATGTTATCGCTCCTCCAAGTCGTATATAAATGTGTATGCAACACACATATCATATTCCAACAAATAGCAAAAATGTGACCCACCAATATTAGGCTACATTACACGTATATGTGCGCATAGATGATACATGTTTACGGGTGCAACCGATCATCTTCAAAACGCGACAATTTTATAGCCGAAACTATTTAATTTTTTATTGAGAGTAAAATAAAGTCTAAATATTTTAAAGTATACTGAATGAAACTAAATAAAGACTAAAACAATAGTTTAACATCTTCATTAATGAAAGGTATATTGATCAACTGTTTTTAAAAAAAGAGAAACGTGCTTGATGATATTTATTCACAATCTCATCTTTCAGTCCCACTCTTTGATTCTCCATCTCTTTTATCTTTTCCATGAAAGGTAACATTAAATCTCAATTCTAATTCAATTAGATTTAAGTGCATTTGCTGTCTCATTAGTTTAATGTTATTAGGGTTTGAATTTTCATCGACAACGTAATAGCAAAATAGGTTTCAAGCGAGTAGAGGGAGAATTGGGAGTTTAGAGAGTACCAAGATCTAATAGATAGAATAAAGTAATGAGATAGGGTTGAAACAAAAGTTTTACAAAAGTGCCGAATTGTATCTAGACTATTTTTTTTTTGTCCAACATTGCCTTTTAACATAGTAACATATGGGTAGAAATCTAAAAATTGATAGTGAAGATCGCTTTTGCAGCTAGGTTATGAGCTTATCATCTCATATCACGACATGAAAAAGATGGTAAAAGAGGTCACAAAAAGATGACTAGACTTGTTAAGGAGGATCATGTTTCAATGATTCGTGAATATGGACAGTTTCCAACAACCCTCTAATCCAAAATGGACAATATAGTAGATGCCACGAGTTTTGATTCGAATGGAAAGATAGTTGAATTCTCCATAAAGAGTTTTTGTAGGTGATAAGATTGTGTGACAGTCATCTACTCAACCAGTTCTATAAATAAAATCGTTTAAAAATTGATATAAACCAGTTTTTTAGAACCACAGAATTTTTTCTATAAGAAAAAAAAAGACGGGAAAATCTACTACCAATGAACAATCGAAGGAGGTATTATGATAACATTCTAGTCGAAACTGTCAGTCGAAAATGAAAGAAATTTGAAAGAAAGCTCAAAATAAATCAAATACAAGTTGTTTGTTAAATGAACAACCAATTTACAATGTTTTACAATAGGCACAAAAAATGATGACAAGAAACGTCGACTCTCTGTTATTTCTAAACTTCAATTTTATAGAACAAATTACACAATCTAATACAAAGGGAAGATAAGATTCTGGAGACTCAATTTCACAAACTCTCTTCCTCTATTTTTTTCTCTTCTGTAATGGATTCTAAGCTTCTAACAAATTTTCTATAGGGTATAATATTGAAGATAGAGTTGCAGAGAGTACGATGAATTTACCAGCTGTGTTCGACATGTTGTCTTTATTGATCTTGTACTTTGTGCAAAAATGATCTGCTTGACTGCAGAAGACGCTGTTCTTATAATCCTTTGTGTGATGGCTGGAAAAGTAAGTTTCGTGGAAGAGATGCAAATTGGAATATGCAATTTCGAGAAACAGCCTTCTTTGTCAACCAAATTGGAAAGTATTGGAATTGTAGAACTGCTGTGCAACCGTCAGTGATTTCCTGAAGTTGGTAACAGACTGGGGGGTTTATCTAGAACTCTCATAGGCTTCCAATCGGATTCTTCCTTGCTTTGTCTGAGAGCGACGAAATGAAGCGCATGACTTTGAATTTGGTAGATATGACACGCCCAAGGGTATGCATCTGGTGCTGACCAAATCTTCTGCTCCTCAAATACTGTCTCCTCAGTAAGAGATTCAGCCACACAATATACCAAGTTAGGCTCTGGCTCAGCAAAATCCGCGACTGCGACACATCCTGGAGCAACAAAGCCTTCTGGAGCCCTTGGATGCCAGATTGATACAGGAGTTATGTAGTCGTCTTGGCAGTTTCTCCATACCTGC

mRNA sequence

GGGGAGTTATAAAAAATAATAAATTTGACAAGCTATTTAAAAAATATAACAAAATTTCTAATAATATCAATAACGGTGACATTGAAGTTTATATTTTAGTTTATTTTGCTATCTTTAAAAATGTTATATTTTTTTCCCTAATAAATTTAACACGTGAGAGTTATGGATGTAAGAATAAAAAAATTGACTTTTTTGGTCAAAGTAAAGCGATGGGTACTATAAGCAAAGGGCCTATGCTTCTCGAAGCCCAAGCCAGTCCATTTCCTAATGGGCCCAATCGACTTTTGACTTTTATGGGCCGAAGTGTCAAAAGCCGAAAACGATGGTCTCTGTCTGGGCCTAAACAAGTGGAAGCCCAAGAAATGAAAGAACCTCCGTGTTTCTTCTTCTTCTCTGTATCGGCGGAGGAATTCGGTGAGAGAGAGAATTGAAATGGGGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCCGGAGCCTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAGTCCGCTCGTAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGAGGAGTCTCTAAATCCGATTCTTCTTCTGAAACTCCTCAGTCTTGATTTGGTACCTTATGTCCTTTTCCTCGATACGCTTAGGTAATGATTTTGGATAGGATTGTGTTGGAGAAGTCTATTGTGGATTAATGAACGAGAAATTTCACCTTCTGGAACAAGGAGATCTGTAGTTTTTGATTTGAGGCGTTTTGTGAAGTATCGATTAACTTAGATATTTGGAACCCATATCGATCTTGTACACAGATCAAGGCGTTTTGTGGGTCTCTCTTCAATCCTTCCATTTCTTTTTTGTTATTCTCATCAAATTTGCAAATTTTATTTTAGATTTTTTCTTCACGTCGATGTCTTTTTCTATTTTGGACTCACTCTCTCTGAATTACGGTCGATCTTCTTCCATCTTTGATTCCAGAAAGAGACCAAACCAAGACGAATGAAATGGTTCACTTGAAACCGTGACATGATGTTATCGCTCCTCCAAGTCGTATATAAATGTGTATGCAACACACATATCATATTCCAACAAATAGCAAAAATGTGACCCACCAATATTAGGCTACATTACACGTATATGTGCGCATAGATGATACATGTTTACGGGTGCAACCGATCATCTTCAAAACGCGACAATTTTATAGCCGAAACTATTTAATTTTTTATTGAGAGTAAAATAAAGTCTAAATATTTTAAAGTATACTGAATGAAACTAAATAAAGACTAAAACAATAGTTTAACATCTTCATTAATGAAAGGTATATTGATCAACTGTTTTTAAAAAAAGAGAAACGTGCTTGATGATATTTATTCACAATCTCATCTTTCAGTCCCACTCTTTGATTCTCCATCTCTTTTATCTTTTCCATGAAAGGGTATAATATTGAAGATAGAGTTGCAGAGAGTACGATGAATTTACCAGCTGTGTTCGACATGTTGTCTTTATTGATCTTGTACTTTGTGCAAAAATGATCTGCTTGACTGCAGAAGACGCTGTTCTTATAATCCTTTGTGTGATGGCTGGAAAAGTAAGTTTCGTGGAAGAGATGCAAATTGGAATATGCAATTTCGAGAAACAGCCTTCTTTGTCAACCAAATTGGAAAGTATTGGAATTGTAGAACTGCTGTGCAACCGTCAGTGATTTCCTGAAGTTGGTAACAGACTGGGGGGTTTATCTAGAACTCTCATAGGCTTCCAATCGGATTCTTCCTTGCTTTGTCTGAGAGCGACGAAATGAAGCGCATGACTTTGAATTTGGTAGATATGACACGCCCAAGGGTATGCATCTGGTGCTGACCAAATCTTCTGCTCCTCAAATACTGTCTCCTCAGTAAGAGATTCAGCCACACAATATACCAAGTTAGGCTCTGGCTCAGCAAAATCCGCGACTGCGACACATCCTGGAGCAACAAAGCCTTCTGGAGCCCTTGGATGCCAGATTGATACAGGAGTTATGTAGTCGTCTTGGCAGTTTCTCCATACCTGC

Coding sequence (CDS)

ATGGGGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCCGGAGCCTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAGTCCGCTCGTAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGAGGAGTCTCTAAATCCGATTCTTCTTCTGAAACTCCTCAGTCTTGA

Protein sequence

MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS
Homology
[Close]
BLAST of Cmc04g0087421 vs. NCBI nr
Match: XP_016903560.1 (PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo] >KAA0038521.1 putative membrane lipoprotein [Cucumis melo var. makuwa] >TYK31115.1 putative membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS
Sbjct: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60

[Close]
BLAST of Cmc04g0087421 vs. NCBI nr
Match: KGN60447.1 (hypothetical protein Csa_002577 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.8e-22
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SK DSSSETP S
Sbjct: 35 MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS 94

[Close]
BLAST of Cmc04g0087421 vs. NCBI nr
Match: XP_004148372.3 (uncharacterized protein LOC101212897 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.8e-22
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SK DSSSETP S
Sbjct: 24 MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS 83

[Close]
BLAST of Cmc04g0087421 vs. NCBI nr
Match: XP_023553989.1 (uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.7 bits (265), Expect = 7.1e-20
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQ 60
          M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S SDSSS TPQ
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGSSDSDSSSATPQ 59

[Close]
BLAST of Cmc04g0087421 vs. NCBI nr
Match: XP_038888236.1 (uncharacterized protein LOC120078095 [Benincasa hispida] >XP_038888237.1 uncharacterized protein LOC120078095 [Benincasa hispida])

HSP 1 Score: 102.1 bits (253), Expect = 1.8e-18
Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = 0 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSD---SSSET 60
          M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI DLRRG S SD   SSSET
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLILDLRRGTSNSDSSSSSSET 60

[Close]
BLAST of Cmc04g0087421 vs. ExPASy TrEMBL
Match: A0A5A7TAA3 (Putative membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003920 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS
Sbjct: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60

[Close]
BLAST of Cmc04g0087421 vs. ExPASy TrEMBL
Match: A0A1S4E6G4 (uncharacterized protein LOC103503490 OS=Cucumis melo OX=3656 GN=LOC103503490 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS
Sbjct: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60

[Close]
BLAST of Cmc04g0087421 vs. ExPASy TrEMBL
Match: A0A0A0LIB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912310 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-22
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SK DSSSETP S
Sbjct: 35 MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS 94

[Close]
BLAST of Cmc04g0087421 vs. ExPASy TrEMBL
Match: A0A6J1I859 (uncharacterized protein LOC111471813 OS=Cucurbita maxima OX=3661 GN=LOC111471813 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.5e-19
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 0 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQ 60
          M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S +DSSS TPQ
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG-SSNDSSSATPQ 58

[Close]
BLAST of Cmc04g0087421 vs. ExPASy TrEMBL
Match: A0A6J1F0E3 (uncharacterized protein LOC111438056 OS=Cucurbita moschata OX=3662 GN=LOC111438056 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.2e-18
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 0 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQ 60
          M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S +DSSS  PQ
Sbjct: 1  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG-SSNDSSSANPQ 58

[Close]
BLAST of Cmc04g0087421 vs. TAIR 10
Match: AT4G17085.1 (Putative membrane lipoprotein )

HSP 1 Score: 81.3 bits (199), Expect = 3.0e-16
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          M KSF+LIQT+A +G FSA+S WYGFMFGRESARK+LG LI++LRRG S SDS   TP S
Sbjct: 1  MQKSFSLIQTVAISGVFSAVSCWYGFMFGRESARKELGGLIEELRRGGSNSDS---TPHS 57

The following BLAST results are available for this feature:
BLAST of Cmc04g0087421 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903560.12.4e-23100.00PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo] >KAA0038521.1 put... [more]
KGN60447.15.8e-2293.33hypothetical protein Csa_002577 [Cucumis sativus][more]
XP_004148372.35.8e-2293.33uncharacterized protein LOC101212897 [Cucumis sativus][more]
XP_023553989.17.1e-2093.22uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo][more]
XP_038888236.11.8e-1888.71uncharacterized protein LOC120078095 [Benincasa hispida] >XP_038888237.1 unchara... [more]
BLAST of Cmc04g0087421 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc04g0087421 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TAA31.1e-23100.00Putative membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1S4E6G41.1e-23100.00uncharacterized protein LOC103503490 OS=Cucumis melo OX=3656 GN=LOC103503490 PE=... [more]
A0A0A0LIB22.8e-2293.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912310 PE=4 SV=1[more]
A0A6J1I8598.5e-1991.53uncharacterized protein LOC111471813 OS=Cucurbita maxima OX=3661 GN=LOC111471813... [more]
A0A6J1F0E33.2e-1889.83uncharacterized protein LOC111438056 OS=Cucurbita moschata OX=3662 GN=LOC1114380... [more]
BLAST of Cmc04g0087421 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G17085.13.0e-1670.00Putative membrane lipoprotein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38384:SF2MEMBRANE LIPOPROTEIN-RELATEDcoord: 1..57
NoneNo IPR availablePANTHERPTHR38384MEMBRANE LIPOPROTEIN-RELATEDcoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0087421.1Cmc04g0087421.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane