Cmc03g0086851 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0086851
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionLEUNIG_homolog
LocationCMiso1.1chr03: 29884984 .. 29887190 (+)
RNA-Seq ExpressionCmc03g0086851
SyntenyCmc03g0086851
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGTGATCCTCTGGGATGGAGTGGCCCCATCTTGTTAGTGTTACATTGTTGAACCTCAATCCAGTTGATAAGCTTGAGTAGTAGAGACTGAGGAACTTTCCTGATATCCTCGTCCCCCGCTCCCTTGGTCTTCGTTATACCCGCTTCCAATGCTTTCTCTATGAACTCCATGAACCACTTTCCAGCTTCCGTTTCAATCTGCCTTCCCAGTTTGATTGTGTCGCTCAAGCTGCACCATGATGCCATTGGCATTGGCACTGGTGGCTTCTGATTTTCATCATTTTCACCACTACCACTGCTTTCCATGCCTAATTGCCCAACAGATGCTGCTGCTGTTTTCTGCTTCCCAAACTTGGTTTTCCTTTGCTCGCTTCTATCTGGAAAAGCTGCCACTGATTTGTACAACCCACACCTTCTTTTGGATAAACTTGCTTCTGGATTATTGGAGTTGGGAGAGATATCGCTTAGTATGGAGGGAGATTCTTGTTCCTGCTTGGAAGCCTGGTTCTGAGCCAATTCAGTAGCAGCTTGAATGGACACCATATCACTCACGGCCTGCATGATTTGTTGGTGGAATTCAAGAAACTTGTTGAAACAGTTGGCGGGAGCGTCGGCTTTAGCCCATTTGCTCAACCTGGAAAGCATCCTACAATTACATGCCGCAAAGTATCCATCTTAGAACAACCCAGCGATGAAAAAAAAAAGTGACAGAGAATGGTCGTAGCTGTATATAGAAGTACCTGAGGGATCTAACTAAAGCTTCCGTGGCAGTAGCACATCTTAAGGCGTGGAGGGCATTCTTCTGCGCTGTATCTCTCTGCTGCACAGCTTCCTTGCCCAGTATGCTGAGTTTTCCTGGTAAGTTGACGGGAAGAGCGGTGACGCTATCATCAGAGTCGCAACCCTTCGGCATGGGGGAGGTAGAGGCAGCTGGAGCTGGGGTTTTTTGATTTCTTCGCGAACTAGGGGGTGGAGTGGCGCTCTTCTTCACTGCAACGTGACAACAAGCCAAAGAATGAAATGAAAGATAACATGTTTCAAGGCCAACAGGCAACAGCAGCACTTGAAACTAAGTTTAACAATAACGAATAGTACCTACAGCTGAGTTGAAGGGAGTCGGTGGTGAAATCCTTGGTTCTCGCTCACACACGCTCTTGCTTCTAGGGAATTTGGATATGGTTGCACAGCTTTTCCTAAGCATTGAAGGAGTAGGAGCAGGGCTTTCGAGTTTACCCAACAGACTACCACCAAAGGAAGACCGGATTCCCTTCTTGCCCCCTACCACGGGAGACGTCATCAGGGAGCTGGAAGTTGCACGCTCCTTCACTGGGGTACACTGCTCAAAGTCCAGCGGAAGGGGCTTCAGAATTAGGGGCGAAGAGTTCCCATCTCCCAGGCTCAGCCCTGTTCCTGTTCCCCAAGAACCCCGCCTCGGACACGAAACTTTTGCCTTTGCAGCCATTGACTTATCATCACATTTCTCCCCTTTCTTTCTTAAACCCATCAGCGGCTCTGGCGTTCCCACCAGAGGGTGCCGCCCAGGGAGTGGCTTCGTGCCTTTCATCACTGGGACGGGCGACCCAGGTTCCAATTTATCCACGTAAATGAATTGACCAAGCTGCATTCTGTTGCTCAGAACGAAATCGTCTTGATCCGAAGGCAGACTCACGTAGATTGAATGCGAAGAATCGGACACCTTGATATAGAATCCATGCTTAGGCCACAGGTTTTTCTCATCCAGATCCGCTGGCACAATGTCCGTCACCTGCAACAGTGAGCTCCGGTGATCGCTTGTGGGTTTCACTCCAGAATTCATTCCATCGAGAAGCTTCACAAGAACTCCCGGTGCTAGACTCGCCATTCTCCAACTCCAAACTCAAAGAACTTCAGCAAACAACCAACCACTTGATTTCCCAGATTATTTTACTTCTGTCTCAATTACAAATAATATTCCCGGCTTCTCTCACTTGCTTGCTTTCATGGACAAGAATGGGAAAGTGGCCGTTGCCAACGGAAGCCAATCCCAGGAAAAAGACCCAACTTTTTTGAAATTTGGAATTTGTAACGTTACCCAACGGTCACATGGAGTGGACCCACCCATCTAACTCCTTATAGTTTCGGAAAATGCTCAACCCCTTTTTCTCATTCTTATAAATGGAGCGCCTTTTCCTTTGGGTTAATTAACTGGGCAATAATTTATATATTG

mRNA sequence

TTTGTGATCCTCTGGGATGGAGTGGCCCCATCTTGTTAGTGTTACATTGTTGAACCTCAATCCAGTTGATAAGCTTGAGTAGTAGAGACTGAGGAACTTTCCTGATATCCTCGTCCCCCGCTCCCTTGGTCTTCGTTATACCCGCTTCCAATGCTTTCTCTATGAACTCCATGAACCACTTTCCAGCTTCCGTTTCAATCTGCCTTCCCAGTTTGATTGTGTCGCTCAAGCTGCACCATGATGCCATTGGCATTGGCACTGGTGGCTTCTGATTTTCATCATTTTCACCACTACCACTGCTTTCCATGCCTAATTGCCCAACAGATGCTGCTGCTGTTTTCTGCTTCCCAAACTTGGTTTTCCTTTGCTCGCTTCTATCTGGAAAAGCTGCCACTGATTTGTACAACCCACACCTTCTTTTGGATAAACTTGCTTCTGGATTATTGGAGTTGGGAGAGATATCGCTTAGTATGGAGGGAGATTCTTGTTCCTGCTTGGAAGCCTGGTTCTGAGCCAATTCAGTAGCAGCTTGAATGGACACCATATCACTCACGGCCTGCATGATTTGTTGGTGGAATTCAAGAAACTTGTTGAAACAGTTGGCGGGAGCGTCGGCTTTAGCCCATTTGCTCAACCTGGAAAGCATCCTACAATTACATGCCGCAAAGTATCCATCTTAGAACAACCCAGCGATGAAAAAAAAAAGTGACAGAGAATGGTCGTAGCTGTATATAGAAGTACCTGAGGGATCTAACTAAAGCTTCCGTGGCAGTAGCACATCTTAAGGCGTGGAGGGCATTCTTCTGCGCTGTATCTCTCTGCTGCACAGCTTCCTTGCCCAGTATGCTGAGTTTTCCTGGTAAGTTGACGGGAAGAGCGGTGACGCTATCATCAGAGTCGCAACCCTTCGGCATGGGGGAGGTAGAGGCAGCTGGAGCTGGGGTTTTTTGATTTCTTCGCGAACTAGGGGGTGGAGTGGCGCTCTTCTTCACTGCAACGTGACAACAAGCCAAAGAATGAAATGAAAGATAACATGTTTCAAGGCCAACAGGCAACAGCAGCACTTGAAACTAAGTTTAACAATAACGAATAGTACCTACAGCTGAGTTGAAGGGAGTCGGTGGTGAAATCCTTGGTTCTCGCTCACACACGCTCTTGCTTCTAGGGAATTTGGATATGGTTGCACAGCTTTTCCTAAGCATTGAAGGAGTAGGAGCAGGGCTTTCGAGTTTACCCAACAGACTACCACCAAAGGAAGACCGGATTCCCTTCTTGCCCCCTACCACGGGAGACGTCATCAGGGAGCTGGAAGTTGCACGCTCCTTCACTGGGGTACACTGCTCAAAGTCCAGCGGAAGGGGCTTCAGAATTAGGGGCGAAGAGTTCCCATCTCCCAGGCTCAGCCCTGTTCCTGTTCCCCAAGAACCCCGCCTCGGACACGAAACTTTTGCCTTTGCAGCCATTGACTTATCATCACATTTCTCCCCTTTCTTTCTTAAACCCATCAGCGGCTCTGGCGTTCCCACCAGAGGGTGCCGCCCAGGGAGTGGCTTCGTGCCTTTCATCACTGGGACGGGCGACCCAGGTTCCAATTTATCCACGTAAATGAATTGACCAAGCTGCATTCTGTTGCTCAGAACGAAATCGTCTTGATCCGAAGGCAGACTCACGTAGATTGAATGCGAAGAATCGGACACCTTGATATAGAATCCATGCTTAGGCCACAGGTTTTTCTCATCCAGATCCGCTGGCACAATGTCCGTCACCTGCAACAGTGAGCTCCGGTGATCGCTTGTGGGTTTCACTCCAGAATTCATTCCATCGAGAAGCTTCACAAGAACTCCCGGTGCTAGACTCGCCATTCTCCAACTCCAAACTCAAAGAACTTCAGCAAACAACCAACCACTTGATTTCCCAGATTATTTTACTTCTGTCTCAATTACAAATAATATTCCCGGCTTCTCTCACTTGCTTGCTTTCATGGACAAGAATGGGAAAGTGGCCGTTGCCAACGGAAGCCAATCCCAGGAAAAAGACCCAACTTTTTTGAAATTTGGAATTTGTAACGTTACCCAACGGTCACATGGAGTGGACCCACCCATCTAACTCCTTATAGTTTCGGAAAATGCTCAACCCCTTTTTCTCATTCTTATAAATGGAGCGCCTTTTCCTTTGGGTTAATTAACTGGGCAATAATTTATATATTG

Coding sequence (CDS)

ATGGTTGCACAGCTTTTCCTAAGCATTGAAGGAGTAGGAGCAGGGCTTTCGAGTTTACCCAACAGACTACCACCAAAGGAAGACCGGATTCCCTTCTTGCCCCCTACCACGGGAGACGTCATCAGGGAGCTGGAAGTTGCACGCTCCTTCACTGGGGTACACTGCTCAAAGTCCAGCGGAAGGGGCTTCAGAATTAGGGGCGAAGAGTTCCCATCTCCCAGGCTCAGCCCTGTTCCTGTTCCCCAAGAACCCCGCCTCGGACACGAAACTTTTGCCTTTGCAGCCATTGACTTATCATCACATTTCTCCCCTTTCTTTCTTAAACCCATCAGCGGCTCTGGCGTTCCCACCAGAGGGTGCCGCCCAGGGAGTGGCTTCGTGCCTTTCATCACTGGGACGGGCGACCCAGGTTCCAATTTATCCACGTAA

Protein sequence

MVAQLFLSIEGVGAGLSSLPNRLPPKEDRIPFLPPTTGDVIRELEVARSFTGVHCSKSSGRGFRIRGEEFPSPRLSPVPVPQEPRLGHETFAFAAIDLSSHFSPFFLKPISGSGVPTRGCRPGSGFVPFITGTGDPGSNLST
Homology
[Close]
BLAST of Cmc03g0086851 vs. NCBI nr
Match: GER32245.1 (LEUNIG_homolog [Striga asiatica])

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-07
Identity = 43/95 (45.26%), Postives = 52/95 (54.74%), Query Frame = 0 

Query: 51  TGV-HCSKSSGRGFRIRGEEFPSPRLS-PV-PVPQEPRLGHETFAFAAIDLSSHFSPFFL 110
           TGV H SKS G GF+  G+       S P+ P PQE  L         +   S F P   
Sbjct: 62  TGVAHWSKSKGTGFKTLGDPITLELFSQPLGPKPQEHLL-------LLLGFLSGFWPLAR 121

Query: 111 KPISGSGVPTRGCRPGSGFVPFITGTGDPGSNLST 143
           +P+SGSGVP +G RPG G  P   GTG+PGS+LST
Sbjct: 122 RPMSGSGVPIKGWRPGKGLAPLRMGTGEPGSSLST 149

[Close]
BLAST of Cmc03g0086851 vs. ExPASy TrEMBL
Match: A0A5A7PH89 (LEUNIG_homolog OS=Striga asiatica OX=4170 GN=STAS_08299 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 43/95 (45.26%), Postives = 52/95 (54.74%), Query Frame = 0 

Query: 51  TGV-HCSKSSGRGFRIRGEEFPSPRLS-PV-PVPQEPRLGHETFAFAAIDLSSHFSPFFL 110
           TGV H SKS G GF+  G+       S P+ P PQE  L         +   S F P   
Sbjct: 62  TGVAHWSKSKGTGFKTLGDPITLELFSQPLGPKPQEHLL-------LLLGFLSGFWPLAR 121

Query: 111 KPISGSGVPTRGCRPGSGFVPFITGTGDPGSNLST 143
           +P+SGSGVP +G RPG G  P   GTG+PGS+LST
Sbjct: 122 RPMSGSGVPIKGWRPGKGLAPLRMGTGEPGSSLST 149

The following BLAST results are available for this feature:
BLAST of Cmc03g0086851 vs. NCBI nr
Match NameE-valueIdentityDescription
GER32245.15.6e-0745.26LEUNIG_homolog [Striga asiatica][more]
BLAST of Cmc03g0086851 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc03g0086851 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7PH892.7e-0745.26LEUNIG_homolog OS=Striga asiatica OX=4170 GN=STAS_08299 PE=4 SV=1[more]
BLAST of Cmc03g0086851 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0086851.1Cmc03g0086851.1mRNA