Cmc03g0086201 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0086201
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	photosystem II core complex proteins psbY, chloroplastic
Location	CMiso1.1chr03: 29597806 .. 29598414 (-)
RNA-Seq Expression	Cmc03g0086201
Synteny	Cmc03g0086201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTACCATGGCTACAATGGCGGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAACCCATAACACCCAAAAGATAATCCCCAAACCTATCTCCCTCCTCTCTCTCCAAAACCTTCCAAAAGGCCTTATTTCATCAAAATCTAATGAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTGCAACTTTGGGAACATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCCGACGGTGACAACCGTGGTTTAGCCCTTCTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTAGGATTAGGTGGATTGACTGCATCAGGGTTTATGTACGCACCTGATGCTTCGGCCAGCGAGATTGCCATGATTGCCGATGCTTCTTCAAGCGATAGCAGGGGACAACTTCTTCTGTTTGTCGTAGCACCCGCCATTCTTTGGGTGTTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCAAGTGA

mRNA sequence

ATGGCAGCTACCATGGCTACAATGGCGGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAACCCATAACACCCAAAAGATAATCCCCAAACCTATCTCCCTCCTCTCTCTCCAAAACCTTCCAAAAGGCCTTATTTCATCAAAATCTAATGAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTGCAACTTTGGGAACATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCCGACGGTGACAACCGTGGTTTAGCCCTTCTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTAGGATTAGGTGGATTGACTGCATCAGGGTTTATGTACGCACCTGATGCTTCGGCCAGCGAGATTGCCATGATTGCCGATGCTTCTTCAAGCGATAGCAGGGGACAACTTCTTCTGTTTGTCGTAGCACCCGCCATTCTTTGGGTGTTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCAAGTGA

Coding sequence (CDS)

ATGGCAGCTACCATGGCTACAATGGCGGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAACCCATAACACCCAAAAGATAATCCCCAAACCTATCTCCCTCCTCTCTCTCCAAAACCTTCCAAAAGGCCTTATTTCATCAAAATCTAATGAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTGCAACTTTGGGAACATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCCGACGGTGACAACCGTGGTTTAGCCCTTCTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTAGGATTAGGTGGATTGACTGCATCAGGGTTTATGTACGCACCTGATGCTTCGGCCAGCGAGATTGCCATGATTGCCGATGCTTCTTCAAGCGATAGCAGGGGACAACTTCTTCTGTTTGTCGTAGCACCCGCCATTCTTTGGGTGTTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCAAGTGA

Protein sequence

MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSK

Homology

[Close]

BLAST of Cmc03g0086201 vs. NCBI nr
Match: XP_008444395.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo] >KAA0061043.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa])

HSP 1 Score: 372.1 bits (954), Expect = 3.1e-99
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 111

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSK 203
           ILWVLYNILQPALNQLNRMRSK
Sbjct: 232 ILWVLYNILQPALNQLNRMRSK 253

[Close]

BLAST of Cmc03g0086201 vs. NCBI nr
Match: XP_004142959.3 (photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 7.6e-98
Identity = 198/202 (98.02%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSN+NSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 111

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFATLG+SDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSK 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 232 ILWVLYNILQPALNQLNRMRSE 253

[Close]

BLAST of Cmc03g0086201 vs. NCBI nr
Match: KGN62604.2 (hypothetical protein Csa_018753 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 7.6e-98
Identity = 198/202 (98.02%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSN+NSNLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 60

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFATLG+SDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSK 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of Cmc03g0086201 vs. NCBI nr
Match: XP_038886078.1 (LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 353.6 bits (906), Expect = 1.1e-93
Identity = 191/202 (94.55%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGL+SSKSN+NSNLST 
Sbjct: 53  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLVSSKSNQNSNLSTI 112

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+TL +SDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 113 LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 172

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQIN+MRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 173 NQINKMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 232

Query: 181 ILWVLYNILQPALNQLNRMRSK 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 233 ILWVLYNILQPALNQLNRMRSE 254

[Close]

BLAST of Cmc03g0086201 vs. NCBI nr
Match: KAG6598253.1 (Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.4 bits (895), Expect = 2.1e-92
Identity = 187/202 (92.57%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAATMATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSNE+SNLS F
Sbjct: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAF 60

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+ L +SDPAFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVV PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSK 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of Cmc03g0086201 vs. ExPASy Swiss-Prot
Match: P80470 (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-48
Identity = 126/209 (60.29%), Postives = 153/209 (73.21%), Query Frame = 0


Query: 1   MAATMA-TMAVLSVKCTSINSTKTHNTQ-KIIPKPISLLSLQNLPKGLISSKSNENSNLS 60
           MAATMA TMAVL+ KC ++N+ KT +T  K   KPISL      P GL +SK      LS
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISL-----SPLGLSNSKL--PMGLS 60

Query: 61  TFLSSTAIAGAVFATLGTSDPAFAAQQIAEIAAD---GDNRGLALLLPLIPAIAWVLFNI 120
             +++ AIAGAVFATLG+ DPAFA QQ+A+IAA+    DNRGLALLLP+IPA+ WVLFNI
Sbjct: 61  PIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120

Query: 121 LQPALNQINRMRSD-KGVIIGLGLGGLTASGFMYA-PDASASEIAMIADASSSDSRGQLL 180
           LQPALNQIN+MR++ K  I+GLGL GL  SG + A P+A A+   +   A  SD+RG LL
Sbjct: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEI---ARGSDNRGTLL 180

Query: 181 LFVVAPAILWVLYNILQPALNQLNRMRSK 203
           L VV PAI WVL+NILQPALNQLN+MRS+
Sbjct: 181 LLVVLPAIGWVLFNILQPALNQLNKMRSQ 199

[Close]

BLAST of Cmc03g0086201 vs. ExPASy Swiss-Prot
Match: O49347 (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.7e-45
Identity = 113/205 (55.12%), Postives = 143/205 (69.76%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAA MAT    + KC S+N           P P  L + Q   K  IS  +    N+S  
Sbjct: 1   MAAAMAT----ATKCMSLN-----------PSPPKLQN-QTKSKPFISLPTPPKPNVSLA 60

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAIAWVLFNILQ 120
           ++STA+AGAVF++L  S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 121 PALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFV 180
           PA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 181 VAPAILWVLYNILQPALNQLNRMRS 202
           V PA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

[Close]

BLAST of Cmc03g0086201 vs. ExPASy TrEMBL
Match: A0A5A7UYJ2 (Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001790 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.5e-99
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 111

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSK 203
           ILWVLYNILQPALNQLNRMRSK
Sbjct: 232 ILWVLYNILQPALNQLNRMRSK 253

[Close]

BLAST of Cmc03g0086201 vs. ExPASy TrEMBL
Match: A0A1S3B9R1 (photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487736 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.5e-99
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 111

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSK 203
           ILWVLYNILQPALNQLNRMRSK
Sbjct: 232 ILWVLYNILQPALNQLNRMRSK 253

[Close]

BLAST of Cmc03g0086201 vs. ExPASy TrEMBL
Match: A0A0A0LKA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.7e-98
Identity = 198/202 (98.02%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSN+NSNLSTF
Sbjct: 52  MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTF 111

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVFATLG+SDPAFAAQQIAEIAADGDNRGLALLLPLIPA+AWVLFNILQPAL
Sbjct: 112 LSSTAIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPAL 171

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA
Sbjct: 172 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 231

Query: 181 ILWVLYNILQPALNQLNRMRSK 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 232 ILWVLYNILQPALNQLNRMRSE 253

[Close]

BLAST of Cmc03g0086201 vs. ExPASy TrEMBL
Match: A0A6J1BQF3 (photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004808 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 7.2e-86
Identity = 177/202 (87.62%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAATMATMAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK+++N NLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 60

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           LSSTAIAGAVF+   +SDPAFAAQQIAEIAA+GDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQINRMRSDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSK 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of Cmc03g0086201 vs. ExPASy TrEMBL
Match: F6GVJ9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 9.7e-75
Identity = 159/202 (78.71%), Postives = 176/202 (87.13%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAAT+ATMA+L+ KC SINS K  N  K   KPISLLS+QNLPKGL + KS+EN NLST 
Sbjct: 1   MAATIATMAMLNAKCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTS 60

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPAL 120
           L+ TAIAGA+F+TL + DPA AAQQIAEI ADGDNRGLALLLP+IPAIAWVLFNILQPAL
Sbjct: 61  LAGTAIAGAIFSTLSSCDPALAAQQIAEI-ADGDNRGLALLLPIIPAIAWVLFNILQPAL 120

Query: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPA 180
           NQ+N+MRS KGVIIGLGLGGL ASGFM  P ASASEIA +ADA+SSD+RGQLLLFVV PA
Sbjct: 121 NQLNKMRSTKGVIIGLGLGGLAASGFMLTPHASASEIATLADAASSDNRGQLLLFVVTPA 180

Query: 181 ILWVLYNILQPALNQLNRMRSK 203
           ILWVLYNILQPALNQLNRMRS+
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 201

[Close]

BLAST of Cmc03g0086201 vs. TAIR 10
Match: AT1G67740.1 (photosystem II BY )

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-46
Identity = 113/205 (55.12%), Postives = 143/205 (69.76%), Query Frame = 0


Query: 1   MAATMATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTF 60
           MAA MAT    + KC S+N           P P  L + Q   K  IS  +    N+S  
Sbjct: 1   MAAAMAT----ATKCMSLN-----------PSPPKLQN-QTKSKPFISLPTPPKPNVSLA 60

Query: 61  LSSTAIAGAVFATLGTSDPAFAAQQIAEIA---ADGDNRGLALLLPLIPAIAWVLFNILQ 120
           ++STA+AGAVF++L  S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 121 PALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFV 180
           PA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 181 VAPAILWVLYNILQPALNQLNRMRS 202
           V PA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

The following BLAST results are available for this feature:

BLAST of Cmc03g0086201 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444395.1	3.1e-99	100.00	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis mel...	[more]
XP_004142959.3	7.6e-98	98.02	photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]	[more]
KGN62604.2	7.6e-98	98.02	hypothetical protein Csa_018753 [Cucumis sativus]	[more]
XP_038886078.1	1.1e-93	94.55	LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-li...	[more]
KAG6598253.1	2.1e-92	92.57	Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita arg...	[more]

BLAST of Cmc03g0086201 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80470	1.5e-48	60.29	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX...	[more]
O49347	2.7e-45	55.12	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of Cmc03g0086201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYJ2	1.5e-99	100.00	Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B9R1	1.5e-99	100.00	photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656...	[more]
A0A0A0LKA1	3.7e-98	98.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1	[more]
A0A6J1BQF3	7.2e-86	87.62	photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia ...	[more]
F6GVJ9	9.7e-75	78.71	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=...	[more]

BLAST of Cmc03g0086201 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67740.1	1.9e-46	55.12	photosystem II BY	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 167..199 e-value: 1.8E-10 score: 40.5 coord: 94..126 e-value: 2.7E-14 score: 52.7
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 94..128 score: 10.933356
IPR038760	Photosystem II PsbY, plant	PANTHER	PTHR34790	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 1..202
None	No IPR available	PANTHER	PTHR34790:SF1	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 1..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0086201.1	Cmc03g0086201.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034219	carbohydrate transmembrane transport
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0000325	plant-type vacuole
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0051119	sugar transmembrane transporter activity