Cmc03g0083291 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0083291
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	protein RADIALIS-like 4
Location	CMiso1.1chr03: 28108756 .. 28110457 (+)
RNA-Seq Expression	Cmc03g0083291
Synteny	Cmc03g0083291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCACACCATACCTTGACTTGGTCCTCGTCTTAAACGAGATCCTTAAGTCTCTTTCTTACCATTATTTCTTTGGCTTTCCTTACAGTATCTTCACCTACTTATTCTCCTGTGTATTGTAAGACAAACCATATATCTTCACCCTTCAAAACTTTCCATCCAAACTTCCTTTATATAATGGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGATAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTACGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCGTTGTTCCCAACGGTTCAATGTATGATGATGAACAGAGGTAACGTTCTTACTACTCTTAAGCGTGTTTTCTATGTCATGTATCGCTATCCTATAGTATCATCCTCGGGAAATCATTCAAGACCTTCGAGTATTCAGTTCTTAAGGAAAAAAGATCTTCAAAATAACATGATTCTTACTAGTGTCACTAGAAAAACAACTTATAAGAGAAAGGGTATTCATCTTTGCTGGGTGAACCAACCTCCCTTGTTTCTTCAAAGGCATAATATTATCCATTTTTGGAATTTAAATCCATAAGACTTTGATTTTAGTTTCATTCAAAAACCACGTACCGATAGCATTACCGTCCTTATTTATTTATATATCGTGGATCTTCTCTTTCTGAGTGGATGTTAGACTACACGTATATGTTTCTTTCCCAACCATCCTCAGACTAAAATTTCAATTTCCTTTTCATCATTTATCCAATGGAAGTTCAAATGGCTGCAGGCTATATAAAAGGAAATAATCTATCTCAACCGATTTTCTATAAACAGTATATGTAGAGGAGAGAAGATGATATTATTTTATGTCCATGTATCCTTACGTACCACGCTCTCTCTTTTCCTACTCAATTAGCTACAACTTAAATCCTAACACCGACAACTCTCTTTTCTACGGAGACTTCATGCTATTCCTAATCTATTCATGCATTCCCACTTCCTCTTTCTAAGAAAAAGACCACGTGAAATCTAATCTCCCATGCTTTAAATTACTTTGCACGTGGTCCTGTATTTCTGACTTTAGACATCTACGTATTTAATTATAAATCCCTTCTTTGAAATTTAGATCTGCTTGATCAGTATTTGGCCACAAAAGTACTAATTAAAAAACTTTTAAGCTAACATGGGTTGCGTTAAATGGACATCGTTGCCTCCTTGAACTATTGCACGCTTATGAAGAATTCCGCTGCCCCCTTGCAGAATTAATTTAAGATTAACTAATCTTTTTAATGATCATTCTCTCTTCAAACTATTGCAGGCTCATGAAGAATCTAAAGCTCCAATAAGGCAAGGGTGTTATACCAACGATAGAATAAGAGCTGTAGAAGCGTTGTTCTCGATAATTTCAAGAATATAGCTTGCTGTCGGTATTTCTCTACTTTCCCGCTCTGTTTGTCCTTTCTACCATATATTGCTAAACTATTGTAACCTGTGAAGCGAACTATAATCTATTGTAAGTTGTAATCTGATTGTTCGTGTACCCGATTTCTCTGCTTTTGTGTACTTCTATCATTACTGTTTCATT

mRNA sequence

TTTTCACACCATACCTTGACTTGGTCCTCGTCTTAAACGAGATCCTTAAGTCTCTTTCTTACCATTATTTCTTTGGCTTTCCTTACAGTATCTTCACCTACTTATTCTCCTGTGTATTGTAAGACAAACCATATATCTTCACCCTTCAAAACTTTCCATCCAAACTTCCTTTATATAATGGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGATAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTACGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCGTTGTTCCCAACGGTTCAATGTATGATGATGAACAGAGGCTCATGAAGAATCTAAAGCTCCAATAAGGCAAGGGTGTTATACCAACGATAGAATAAGAGCTGTAGAAGCGTTGTTCTCGATAATTTCAAGAATATAGCTTGCTGTCGGTATTTCTCTACTTTCCCGCTCTGTTTGTCCTTTCTACCATATATTGCTAAACTATTGTAACCTGTGAAGCGAACTATAATCTATTGTAAGTTGTAATCTGATTGTTCGTGTACCCGATTTCTCTGCTTTTGTGTACTTCTATCATTACTGTTTCATT

Coding sequence (CDS)

ATGGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGATAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTACGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCGTTGTTCCCAACGGTTCAATGTATGATGATGAACAGAGGCTCATGAAGAATCTAAAGCTCCAATAA

Protein sequence

MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ

Homology

[Close]

BLAST of Cmc03g0083291 vs. NCBI nr
Match: XP_008444724.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 204.9 bits (520), Expect = 3.2e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Cmc03g0083291 vs. NCBI nr
Match: XP_004152694.1 (protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_022103 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 4.7e-48
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Cmc03g0083291 vs. NCBI nr
Match: XP_038884277.1 (protein RADIALIS-like 4 [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 3.4e-46
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKP+V NGS+Y DEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 101

[Close]

BLAST of Cmc03g0083291 vs. NCBI nr
Match: KAA0065228.1 (protein RADIALIS-like 4 [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 6.3e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 94
          LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of Cmc03g0083291 vs. NCBI nr
Match: XP_022961874.1 (protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-like 4 [Cucurbita maxima] >XP_023545905.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.7 bits (465), Expect = 7.7e-43
Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 102
           L+QDLMHIESGK+PLPNYKP+V NG++Y DEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Cmc03g0083291 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-26
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 8   SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMH 67
           +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4   NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68  IESGKVPLPNYKPVVPNG-SMYDDEQRLMKNLKL 101
           IE+G+VPLPNYK    N  S+ D + R MKNLK+
Sbjct: 64  IETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Cmc03g0083291 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-25
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSS     +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDI
Sbjct: 1   MASSSM----SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPV---VPNGSMYDDEQRLMKNLKLQ 102
           L++DLM+IE   VPLP YK V     +  + D + RLMKN+++Q
Sbjct: 61  LVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Cmc03g0083291 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-24
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LLQDLMHIESGKVPLPNYKPV--VPNGSMYDDEQRLMKNLKLQ 102
           L+QD+  IE+G VP PNY+      NG +  +E+R M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR-MRNMRLQ 100

[Close]

BLAST of Cmc03g0083291 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-24
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1   MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LLQDLMHIESGKVPLPNYKPVVPN---GSMYDDEQRLMKNLKLQ 102
           L++D+  IE+G VP P+YK    N   G + D+E+R M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR-MRSMKLQ 101

[Close]

BLAST of Cmc03g0083291 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-22
Identity = 51/94 (54.26%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 8   SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMH 67
           S+  S   W+ K+NK FE AL +Y +DTPDRW  VARAV G+T EEVK+HY+IL++D+ +
Sbjct: 3   STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 68  IESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 102
           IESGKVP PNY+     G+M  DE+R  +NLK++
Sbjct: 63  IESGKVPFPNYR--TTGGNMKTDEKR-FRNLKIR 93

[Close]

BLAST of Cmc03g0083291 vs. ExPASy TrEMBL
Match: A0A1S3BBS2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.6e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Cmc03g0083291 vs. ExPASy TrEMBL
Match: A0A0A0LPB1 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.3e-48
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 102
           LLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Cmc03g0083291 vs. ExPASy TrEMBL
Match: A0A5A7VC75 (Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005670 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.1e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
          MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 94
          LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of Cmc03g0083291 vs. ExPASy TrEMBL
Match: A0A6J1K2Q1 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 102
           L+QDLMHIESGK+PLPNYKP+V NG++Y DEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Cmc03g0083291 vs. ExPASy TrEMBL
Match: A0A6J1HFA3 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 102
           L+QDLMHIESGK+PLPNYKP+V NG++Y DEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Cmc03g0083291 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 118.2 bits (295), Expect = 3.7e-27
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 8   SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMH 67
           +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4   NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68  IESGKVPLPNYKPVVPNG-SMYDDEQRLMKNLKL 101
           IE+G+VPLPNYK    N  S+ D + R MKNLK+
Sbjct: 64  IETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Cmc03g0083291 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-26
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSS     +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+AEEVKRHYDI
Sbjct: 1   MASSSM----SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPV---VPNGSMYDDEQRLMKNLKLQ 102
           L++DLM+IE   VPLP YK V     +  + D + RLMKN+++Q
Sbjct: 61  LVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Cmc03g0083291 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LLQDLMHIESGKVPLPNYKPV--VPNGSMYDDEQRLMKNLKLQ 102
           L+QD+  IE+G VP PNY+      NG +  +E+R M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR-MRNMRLQ 100

[Close]

BLAST of Cmc03g0083291 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-25
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60
           MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKT EE KR YD+
Sbjct: 1   MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LLQDLMHIESGKVPLPNYKPVVPN---GSMYDDEQRLMKNLKLQ 102
           L++D+  IE+G VP P+YK    N   G + D+E+R M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR-MRSMKLQ 101

[Close]

BLAST of Cmc03g0083291 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 110.5 bits (275), Expect = 7.8e-25
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDILLQDLMH 67
          +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKVPLPNYKPVVPNGSMYDD 91
          IE+G+VPLPNYK    N    +D
Sbjct: 64 IETGRVPLPNYKTFESNSRSIND 86

The following BLAST results are available for this feature:

BLAST of Cmc03g0083291 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444724.1	3.2e-49	100.00	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
XP_004152694.1	4.7e-48	97.03	protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_0...	[more]
XP_038884277.1	3.4e-46	95.05	protein RADIALIS-like 4 [Benincasa hispida]	[more]
KAA0065228.1	6.3e-45	100.00	protein RADIALIS-like 4 [Cucumis melo var. makuwa]	[more]
XP_022961874.1	7.7e-43	87.13	protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-li...	[more]

BLAST of Cmc03g0083291 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	5.2e-26	61.70	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	1.5e-25	60.58	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	1.7e-24	57.28	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	8.4e-24	56.73	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	6.0e-22	54.26	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Cmc03g0083291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBS2	1.6e-49	100.00	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1	[more]
A0A0A0LPB1	2.3e-48	97.03	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 S...	[more]
A0A5A7VC75	3.1e-45	100.00	Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1K2Q1	3.7e-43	87.13	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1	[more]
A0A6J1HFA3	3.7e-43	87.13	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1	[more]

BLAST of Cmc03g0083291 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.2	3.7e-27	61.70	RAD-like 6	[more]
AT1G19510.1	1.1e-26	60.58	RAD-like 5	[more]
AT4G39250.1	1.2e-25	57.28	RAD-like 1	[more]
AT2G21650.1	5.9e-25	56.73	Homeodomain-like superfamily protein	[more]
AT1G75250.1	7.8e-25	61.45	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 3.2E-7 score: 40.0
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..62 score: 6.283716
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..58 e-value: 2.94849E-6 score: 39.0958
None	No IPR available	GENE3D	1.10.10.60		coord: 7..75 e-value: 1.6E-22 score: 81.0
None	No IPR available	PANTHER	PTHR43952:SF32	PROTEIN RADIALIS-LIKE 5	coord: 14..101
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..58 e-value: 2.2E-6 score: 27.7
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 14..101
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0083291.1	Cmc03g0083291.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity