Cmc03g0082841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0082841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transcription initiation factor IIF subunit beta
Location	CMiso1.1chr03: 27876158 .. 27886726 (-)
RNA-Seq Expression	Cmc03g0082841
Synteny	Cmc03g0082841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATCAGTGTCTTCGTCAAAAGAAAGTCAATACTCGATTGAGAGATAAACTCTATAGTCTATACTCTTCGTTTTAGTATACAGATTACATCACTTGTACGACAATCTTCTAGCACTGATTGCGTAATATCAAACCTCCCTCGGATTTCCGACCACCGCTTTCCACTTCTTTAGGGTCCACTCCTCTTCCGTCCACGGACTTCCACACCGCCGTCGTCTCCAGAAAAGAAAAAAAGAAGAACAAAGTTGCAGTAAATCCGCCGTTGGAAATTCAGAAGAGAGAGAGAGTGATTTTGTAAGTTAATAGATATGGAAGATGACCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGAAAGGCGGATAGATCAGTGTGGCTGATGAAGTGTCCGTTGCTAGTCGCTAAGTCGTGGCAGGCTCATCCTCCATCCGATCCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGGTAATCTATAATTCGATATCTGTAATTGATGTTTATGTAGCTAACTAATTAAACTTGTTTTCTTGGGCTTTAAATCTTGTGAATTATGTTGTTTCTTTGATCGATGCTTGAAGGGATGTGTAAGCAGAACCCTAGATTTTGATTCGTTGTAATTTTGATTACTTGGGAGGGGCAGCTTGGTTTTATGATATGTATTGCCGAAGTTCTTTGACAATTTTGTTGTTGCAATGTCTTAAATCTGTTGTTTGGCGTATTGAATGAGAAGCATAGGGCAGTGAGACCCAGGTCCAGGGGCAACGAGTCCTGGTGGGACTTGAGGAAATGCCTCAAACCATGTTAATCTCTTTATTGATTTCTTCTTAGCCTCTATTCTTACTTGTCTATTTTGTTTTTGTCATAACATTTGTTCCAGATAAGGGGAATGATATTAGTTTACTTATGTAAGTTCTGAGCTTTGGCCTCAAATTGTGCAAGAAGATTGAAGTCTTCTTTTGGACCATTTGTTACGAAGCTGAAATATAGTTATGAAATGTTGTAAAAGATATGACCTACTTGGATAATGTCTCCATTGGTGTGTGCTGTGAAACCTTGTTTATAGATTTGGTTTAGGCGTGTACTCCCCTCCCTTGAAACTTAAATTGGAAGATTGAGTATCCTAGAAGAGTTAAAATCTTCACTTGGGAGCTCACTCACGGTTATATCAATTATCAACACTCTCGTTAAAATTAAAGTCTGGAACACTCTATTATTTATTAATTAATTAATATAAGAAACTAAGTCTTCTGACAATGATACGCAAAAAACATAGGGAATTAGAAAAAGGCTCTTCGAGTTGTCTTAATTACACTAGAAATTATGTCTCAGCTGGTTAACAAACACATGTTACAGTTGAGAAGTTAATTGGACTTGAATGATTTCTTTAGCAGCTTAAGCAGAAAGGTAGCAATGTTATCATCTATTTTTGTATTGTTCGGCTGTATTTGTCAATTGTCTTAATAAATATTTGGTTTCATCACAAAGACAATCATCATCGTTGCTGGCTATTTCTTAACTTTTACAAGTCTTTGTTAGACCATACATACTCATATGTACACACACATGCAGACGTGTATATATATACACATATATAAATATAGGAAGCAAATAAATTTTTTATACATTCCAGCAATCATGAGTGTTCTGTGTGGCTCATTGTTTATCCTTTTTTTTTTGTCTAACAACTGTATTCCCTTGCATGCTTTAAAATGAACCTCAGTTCAAGATGGAGATGGCTGGAACAGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGTGAGCAACATGATCCTTATCTGTTGTCCATTCTTTCTTTGACTATGCTGTCACCCTGAATGTAATATGTGAATATTTCTGCCATCCGAAAATGTTTCTTCCTCTATTCTGGATATTGTTTCCTCTGTTATGAACACCAATTTGCACGGATTTTGTTTTATTTTATTGTAATTACATTTGTGGATTTTTTTTTAAGATAAGGAACGAGGATGTTCATTGAAATAAAAAGGGATAGAAGTTAGACGAGGTTTCCCTTTCACCCTTTGCTAAGGAGGTTATAAAAAATCTCCCAATTTTGAACTTGTCAAGAATCGGCTGTGGTTATGAAGGAGAGACACTTCATGTTGCGCAGAGAATCGGTATCAGAAACGTTTTAAAACTAATATGTCCAAATATATGAGAGATATGTGGGAGATGTGTGATTCCGTGATTCTCAAACCCTACGCCTCAAGTTGAGTTTGGGTGAGTGGACGATTTCCACTTATCCAAATGGGGCTGCCTCGAGTGAAATTATCTTTTCCCAAGTGAAATCTCTCACTTTTTGCAAACGTTGCTTGGGTTTTAAATAGAGAGAAATAATAGGTTGGGTTGATGAACGTGACCACTTAAGCAAAAAATTTAATCTACAGTCCTTTGGGTTTGGGTTATTATTCAAATTTGCAATTTTAGTCACCTCGTCCAAGAAGGCTCCTGGGAGATGCAAGATTTTATGTTTTTATCTGTAGGGAGGCTAAGGACAGATTAGGACAATAAATAATACTCGCAATCATAGAAGGCAAAAGTAATATTGTATAATGAATATATGAAATATGGATCTGTTGATCATCTTCCCCAAAGCATTCAACAGGATCTTAAAACATTGGCATGGCTGCAGAGTAAACAACTAAAGCAGACACTAGATAGGAAGTAGGAGAGGGTTCCCCGTGACAAATTCCTCATGAAGTGGATCTTGCTTTCTAGGGCCCTTCTGGACAATAATAGTAGTTGACCGAAGAGAGCTATCACCTGATCTAACTTCTCCCTTTGTTACCAAATCCTTTTTGTGTATGATAGCATCCAATCAGTTCCTTTCACTCTTTTGTTATTAGCCTTGATGAAGTTTTAGAACAAAACCTATTTTTTCCATTCACCTCTTATTTCTAGTAACATGGATTTTCAATCAGAGATTATCTTCCAATAAAGGCTATTTTTGGAATGCGTGAAGTGAATCAATCCGTGTTTTTTTAGCTTTTTGTTGCAAGTTTTATGTTTCTTTTGATGCAGTTTATATTCTTTATGGCATGTTCCGATTTTGGAAAGCTTTTTGTAATCTCCAAAACAACTTTTCTCAACCTCTTAGTTGGACCCCCTCCCTGTGGAGGGCCCTTTTTTAATCCATTATTTCCACAAATGACTTCCGGCTGCAGAAGTCTTGAGTTCTTGTGTCCTCTTCAGCTAGTCAGCCCTTAAATTTATAAACCAACAAAAATTTATAGTTGTTGTTCTGCACCTTTCTTGCCGTGCTAATAACCCAACAAGAAAATTTGTTTTGGAATTTAAGTTTTGTTTTTGTTTAACCTCTTTCTTCTTTTGAGATCAGTAATGTGTTAGGTTTCCCAAAAAGAAAACTGTAATAACCTAACTTAGTGGCAGGAAAACAGAGTATCCTCTGTTGTTTTATTTATTTATAATGCCAAATACATTCATAAGTTTAAAACAGTAAAGAACATCAAGGAAAAGCAATAACAAATAGCATACCAACAAGTAGTCTACCCTAGGATGCCTTGGCTACAGCAGCCGCCCTCCCAAACTTTTATCAAAATTAGACCTACCTCCCCAATCCCAAAAAGATGCTATATATAGGTATTATCCAACCTTCTCTCTCTCCCCCTGGGTCCCACACGCACGATCTCCCATTTATTTTCCTTTTCCCACATTCTTGTCCAGCTGAATTACTTTTCTGTCCCTCCTCTTATATGTATGCAATATGGGAGGTCTTACAATACCCCTTGGTTCCACATTCACCTTGTCCTCAAGGTGGAAAGAAGGGAATTGTTGATTCATTTGATAAACTGATTCCCACGTAGCATCACTCTCTTGTAGGCCTTGCCATTTGATTAACCACTCGTTAGCCCCTAACTCCTTATTCCAACGGATTCCGAGGACATTTTCTGGCTGAAGCTGTAATTCAAAGTTTTCTGTCAACATGGGGTGCTGGTGCTGAACCACTTGCTGTGCCCCCAGCTTGGGTTTGAGCTGAGAGATGTGGAATACATTGTGTATTGCTGCCTCCGGAGGAAGGTCCAGCCGATAAGCCACAGCTCCAATTTCTTCAATGATCTTGTAAGGCCCATAATACCTAGGAGCCAATTTTTCTGATTTCTTCCGAGCCAAGGAGCGTTGTCTGTAAGGTTTGAGTTTGAGATAGACCTCCTCTCCCACCTTTAGCTTAAGTTCCCTTCTCTTTAGATCAGCAAACTTCTTCATGCGATTTTGAGCTAATGTCAAATTTTCCTTCAAGGCACTAAGGGCTGAATCACGTTCCTTCAGCATTACTTCCACTTCATTGTTAGTAGTTTTCTTGTCCCCGTAGGATAGCAAAGGGGAGGGGAACGCCCATAAACTGCCTCAAAAGGAGTAGTTTTTGTAGATGCGTGAAAGGCAGTGTTGTACCACAATTCGGCCCACGGTATGAACTGATCCCACTTGTGCGGCTGCTCATTGCAAAAACATCTCAAGTAAGTCTCCAAGCATTGATTTACTCTCTCAGTTTGTCCATCCGTCTGTGGGTGGAAAGCTGTACTTCTTTTCAGTAATGTCCCCATGGATGCGAATAGTTCCCTCCAAAAATTGCTGAGGAAGATCTTGTCTCTGTCAGATATGATAGAATTTGGAATTCCATGGCGCCTAACTATCTTGTCAATGAAGGTCAGCGCTACTTGTTTCGCCGAGAAGGGGTGTTTGAGAGTGATGAAGTAGGCATACTTAGTGAGACGATCCACCACCACCATAATTACATTCATGCCTCCTGCCTTAGGTAATCCTTCAATAAAGTCCATTGTCCAATCTTCTAGGATTTTGTCCGGAATGGGTAGGGGTTGAAGAACACCAGCCGGTTTAGTAGCTTCATATTTGTTCCGCTGACATACCTCACACTGCTCCACGTATTTTTTGATATCATTCTTCATCCCCTGCCAATAAAGTTCCCCACTCATCCTTTTGTACGTTCGTAGGAATCCCGAATGGCCTCCTAGCACTGAATCATGAAATGTGTGCAGCAATCTTGGAATGAGGGAGGAAGTTTGGGGTAGTACAAGTCTTCCTTTGTAGAGTAATCTACCATTCTTCCACTCGAATTTTCCATCCACTTCTTGTTCCTTCTTCAGCTTCGCCACAATTTTCTGTAGCCCTTCATCTTTGTCAACTTCCTCACAAACAACACTGATGTCGACAATACCCGAAGTTGTCATCTCATGAAGCTCTATCTTCGGTTCCACTCTTGAGAGAGCATCTGCTGCTTTGTTGAGTTGGCCCGGTTGGTAGAGTATTTCAAAATCATACCCTAGTAGTTTGGTTAGCCATTTCTGGAATTGGGGCTGCACTTCCCTCTGCTCCAGCAGAAACTTCAAAGCCTTCTGGTCTGAGAGTATAGAAAACTTCCTTCCCAATAGGTAGTGCCTCCACCTTTGTACAGATAAGACGACAGCCATCAATTCTCTTTCATATATGGACTTTGCCTGGGCTCTTTGCGAGAGTTTCTGACTATAAAAAGCTATGGGATGCCCTCTTTGCGATAAAACTGCTCCCAAGCCGCTGCCTGAAGCGTCAGTTTCTATGGTAAAGGGCAAACTCCAATCGGGCAGTGCCAAGACTGGGATCGTTGTCATTGCCACCTTCAGCCTGACGAATGCTGTTTCAGCGTCTTCATTCCATTTAAAAGCATTTTTCTGTAATAGTTTAGTAAGGGGGGTTGCAATGTTGCTGTAACCCTTAACAAACCTTCTGTAATATCCAGTCAGCCCCAGAAATCCTCTTAATTCAGTCACATCTGAAGGTCTTGGCCAATTTACCATACTTCTAATCTTATCTTCATCTGCCTCTACCCCTGCCTTAGATATTTGGTGTCCCAAATATTGGATTTTAGAATGAGCAAACACACATTTCTTGTGATTGGCATAGAGTTGATTATCCCTTAACACAGCAAAAACCATCCCTAGGTGTTTCTCATGTTCAATGATGTCCCTGCTATATACTAAGATGTCATCAAAAAATACCAAAACACAACGTCTAAGGAAAGGCTTGAAAACCTGATTCATTAGTGATTGAAACGTTGCTGGTGCGTTGGTGAGACCGAAAGGCATCACTAGGAATTCATAATGGCCTTCATGGGTGCGAAACGCTGTTTTCTCTACATCTTCTTCCTTCATTCTAATTTGGTGGTAACCCGATTTGAGGTCCAGTTTAGAGAAAACTGCTGCTCCATACAACTCATCCAATAGTTCTTCAATCACCGGAATAGGAAATTTATCTGAGATTGTAGCTTGATTCAACTTCCGGTAATCAACACAAAAACGCCACCCTCCATCTTTCTTTTTAACCAGGAGAACAGGGCTGGAATATGGGCTTCGGCTTGGGCGGATGACACCATCTTGCAGCATTTCAGCCACTAACTTCTCTATCTCCCCTTTTTGGATATGTCCATATTTATATGGTCTTACATTGATCGGCTTTTGGTCGGGTAGTGTCAATATCCTGTGGTCGATATCTCTCTTTGGAGGGAGCCCCTTTGGTGTGGTAAAAATATCTTTGTACTGTTGTAGTAAAAACCGAATCATAGGGATATCCGCTTCATCTCCTTCCTCTTTCTCATCAGTCTTGTAAGTATCATCAGTTTCTACTTCCATGTTTGCCCACTCCAATAGAAATCCTTGATCCTCCTCTTGCCATGTCTTTTCCAATGTCCTTAGTGAACATTCGGCCCTGATGAGGGAAGGGTCTCCTTTCAATACGATCTGTCTACCACCGTTCCAAAAGCTCATCGTCAAGGAAGGCCAGTTGATCTTCATAGTACCTGTGGTGTCCAGCCACTGCATTCCTAAGACAGCATCAACCGAGCCCAGTTCTACCGCTAGGAAATCTGCTATGATGGTAATTTCGTCAAGCTTCACTTCCACTCTTCGGCATATCCCCTTTCCCCTACAGCGTGTTCCATTTCCTATGGTATAACCGAACGAAGTGTGTGGATCCATTCCCAGCTCTAATTCTGCTGCCAAGGAGTGATGGATGAAATTATGGGTTGCCCCGCTATCGATTAGTACCACTACCTCCTTCTGCCTTATCCATCCCTTGAGTTTCATCGTTCCTTTTGAGGAAATCCGAGTCATGGTCTTCAGTTCAATTGCAGTCTCATCGGTAAGTTCCAAAGTCTTCAGCTCTACGGTTTCCTCGATTACTTCCTCTTGGCTGTCTCCTTCTTCATCCTCTTCTTCTTCATTCATGATGAAGAACATCAGTTCTCTTTTCTCCTTGGTTTTGCACCGGTGACCAGGAGAATACTTATCATTGCATCTGAAGCACAGTCCCCGGTCTAGTCTTGCTCTAAACTCTGCATCAGACAGCCTTTTCACCGGTGGTTCCCCTTTCTTGAAGTTACCTTTAATAGGTATGGTGATCTGTTTCATTTGGAAATCGGTCTTCCTTGGTGGTGGCTTATCCACATCTCCCAGCTTCTTGACCTTAGATGATCCTCCAACTTCCCACTCTGTCATTCCTAACTCCATCTTGGACAGCTTTAAAGCGTAGTTCCGATCATTTACTAGCTGTGCTTCCCTCATACAATCCTCAAGTGTTTGGGGATGCCTACTGATTACCTCGGCTTGTAGGGAAGGTTCTAACCCAGTGACAAACGCATCAACCAACACACTTTCTGCCATGTAGGGTAGTGGGGCTGAATAGGTCACGAATTTTTTGACATATTCATTATAGGATCCTTCTTGTTGAATCCTAATCAATCTTGCTCCCAAGCTCTTTTGTCCCGAGTCTCGAAAAAATTCAAACATTCTACTCTTCAGATCCTCCCATGACTCCACCTTCTTCCTATTATGACTCCAACGGTACCAATCCACCTCATCTTGGCCAAAACTTACCACAGCTACCTTGACTTTTTCACTCTCCGACAGGTTGTTTATCTCAAAAAAATGTTCAGCTCTGTACACCCATGACTCAGGGTTTTCTCCAAGGAACATCGGCATCTCCAGTTTTTTGTACTTGCTCCGGTCAGTTACTGTTCCATTGATCTCTGTTATCGGCTCGGTTTCATCCATCTTCCCCTTTAACTTCATCACTGAACCATCTGATGTGGTACCTGACTCTTCTTTTTTCTTGTAACTATGATTTTCCTTCATTTCGTCAGCCAAACGTTCTACAGCCTTCTTCATTTCCAGTAGCATTTCTTTCATACTCAGGAGTTCCTTTTCAGTACCCTCAACTCTTTCTTCCATCTGTCTTTGGGCCATTTGCCTCGTGATCACCCCCAGTTTCTAGAGGCTCTGATACCAATTGTTAGGTTTCCCAAAAAGAAAACTGTAATAACCTAACTTAGTGGCAGGAAAACAGAGTATCCTCTGTTGTTTTATTTATTTATAATGCCAAATACATTCATAAGTTTAAAACAGTAAAGAACATCAAGGAAAAGCAATAACAAATAGCATACCAACAAGTAGTCTACCCTAGGATGCCTTGGCTACAGCAGCCGCCCTCCCAAACTTTTATCAAAATTAGACCTACCTCCCCAATCCCAAAAAGATGCTATATATAGGTATTATCCAACCTTCTCTCTCTCCCCCTGGGTCCCACACGCACGATCTCCCATTTATTTTCCTTTTCCCACATTCTTGTCCAGCTGAATTACTTTTCTGTCCCTCCTCTTATATGTATGCAATATGGGAGGTCTTACATAATGCTAGGGTGGACATTCGAACATCTGTTGAGGATAAAGCCTTTACCAATTGAGTTATGCTTGGATTTGTCCTGCAATTATTTCTTGACTTGATCTTTATTTAAAAGTATGAACTAATTTAACAAGCATCATTAGTCCTGTTTTCAACTTTTTTTTTTAATTAGGTGGGGAGGGTTCCCTCTCTTGAGAACTATTTCCGTCAAGTATGGATGAAGATGCATGTATCATAATCAGCTAATGTTATCGGTGTTTGTTATAGATTTTTGTCTCTTTGTAAATTCTTTTGTAGGCAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTCGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTAAATCATCAAGAGCCCTTTTTCTTTTCCCTAATACTTTCCTTAAGTCTCACTACTCCATGTTTGCAATTGATTTTACATTTCATAATTTTCTCATGTATTGATAAGGTGATAGACAACGACCGCGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGTATATCTTTCTTATCGTTTTCTTTCATCATTCTTGAACTCTTGTGGTAGTATGATTCTATAATCAATCATTTATTGCAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGATGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAACGACAACCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCTGTATGTCTATTGATCGTTTTCTTATTTATCAACGATTTTTTAAAATATCACTCTTCTTTTCTGTTTTTGCGAACCTGTTGCCAGAGAAGATATAAATTTTAAAACCCTCCCCGACATACACGACTCTAGACACTATACAACCTTCCCTTCCCCATAACTCAAAAGTTCATCAGAGATCCATACACCCTAGAGATCATTTATTATTTTGGCTGTCTGTTGCCAGTGTACATAATACTTATTCTTGATTTGATTTCTGTTCCTTCTCTTTGCAGCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAAAGAGGGACTAATCAAGGAACATACGAGCTTAAGCCTGAATACAAGAAATCTGTTGAAGACACCGGCGGAGAGTAGGTTAGTTTTTGACTGTATCATTATATAGATTCCCTTTTCTTAGGGTAAGTGGAAATGGTCAGAAATAAATCAATTTAAGAGGGGGAAAAATATTTTGCTTTTCCTTTTGTTATATTTTCTTGGGAGGGGGGGAGATGGGAAGTTGAAAGAAGTTGGTTTAAATTAATTGCTATAGATAGCTTTATACTGAAGTAAAACCAAACGTCAAATGGAGGGGGAGTTTTTCTTATGGCAATTACGTTCAAAGTCGTCGGAAGTTGCAAGATGAATCTGTATAGATTTCACAAACTTGATTTTTCATTGACTTCTTATTTTACCTACTGTTTTTCTAATTACAAGTCAAGGAAATTGTTTTTGTCGTGTGTCACTATGCTAGTACTTGTATGAGATATTCAGAATAAGTGAGTGAGAGAGATTGGTGATTACAATGATATTTGAAACTGAAACTAAAGAATTAACCACACGGGTTGGCCTGGTGGTAGATAATGTTTAGTCTAAACAGGAAAAAACTAATGGAAAATGAGTTCTTTCATGGT

mRNA sequence

CAAATCAGTGTCTTCGTCAAAAGAAAGTCAATACTCGATTGAGAGATAAACTCTATAGTCTATACTCTTCGTTTTAGTATACAGATTACATCACTTGTACGACAATCTTCTAGCACTGATTGCGTAATATCAAACCTCCCTCGGATTTCCGACCACCGCTTTCCACTTCTTTAGGGTCCACTCCTCTTCCGTCCACGGACTTCCACACCGCCGTCGTCTCCAGAAAAGAAAAAAAGAAGAACAAAGTTGCAGTAAATCCGCCGTTGGAAATTCAGAAGAGAGAGAGAGTGATTTTGTAAGTTAATAGATATGGAAGATGACCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGAAAGGCGGATAGATCAGTGTGGCTGATGAAGTGTCCGTTGCTAGTCGCTAAGTCGTGGCAGGCTCATCCTCCATCCGATCCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAACAGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTCGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTGATAGACAACGACCGCGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGATGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAACGACAACCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCTCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAAAGAGGGACTAATCAAGGAACATACGAGCTTAAGCCTGAATACAAGAAATCTGTTGAAGACACCGGCGGAGAGTAGGTTAGTTTTTGACTGTATCATTATATAGATTCCCTTTTCTTAGGGTAAGTGGAAATGGTCAGAAATAAATCAATTTAAGAGGGGGAAAAATATTTTGCTTTTCCTTTTGTTATATTTTCTTGGGAGGGGGGGAGATGGGAAGTTGAAAGAAGTTGGTTTAAATTAATTGCTATAGATAGCTTTATACTGAAGTAAAACCAAACGTCAAATGGAGGGGGAGTTTTTCTTATGGCAATTACGTTCAAAGTCGTCGGAAGTTGCAAGATGAATCTGTATAGATTTCACAAACTTGATTTTTCATTGACTTCTTATTTTACCTACTGTTTTTCTAATTACAAGTCAAGGAAATTGTTTTTGTCGTGTGTCACTATGCTAGTACTTGTATGAGATATTCAGAATAAGTGAGTGAGAGAGATTGGTGATTACAATGATATTTGAAACTGAAACTAAAGAATTAACCACACGGGTTGGCCTGGTGGTAGATAATGTTTAGTCTAAACAGGAAAAAACTAATGGAAAATGAGTTCTTTCATGGT

Coding sequence (CDS)

ATGGAAGATGACCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGAAAGGCGGATAGATCAGTGTGGCTGATGAAGTGTCCGTTGCTAGTCGCTAAGTCGTGGCAGGCTCATCCTCCATCCGATCCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAACAGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTCGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTGATAGACAACGACCGCGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGATGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAACGACAACCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCTCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAAAGAGGGACTAATCAAGGAACATACGAGCTTAAGCCTGAATACAAGAAATCTGTTGAAGACACCGGCGGAGAGTAG

Protein sequence

MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

Homology

[Close]

BLAST of Cmc03g0082841 vs. NCBI nr
Match: XP_008444765.1 (PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo] >KAA0065193.1 transcription initiation factor IIF subunit beta-like [Cucumis melo var. makuwa])

HSP 1 Score: 521.2 bits (1341), Expect = 5.3e-144
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60
           MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 261
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of Cmc03g0082841 vs. NCBI nr
Match: XP_004152667.1 (transcription initiation factor IIF subunit beta [Cucumis sativus] >KGN62646.1 hypothetical protein Csa_021785 [Cucumis sativus])

HSP 1 Score: 516.5 bits (1329), Expect = 1.3e-142
Identity = 258/260 (99.23%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60
           MED+HGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSD
Sbjct: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 261
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of Cmc03g0082841 vs. NCBI nr
Match: XP_022144312.1 (transcription initiation factor IIF subunit beta [Momordica charantia])

HSP 1 Score: 509.6 bits (1311), Expect = 1.6e-140
Identity = 253/260 (97.31%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60
           MED+HG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSD
Sbjct: 3   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDTLPLAKVILSLDPLQSD 62

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPH
Sbjct: 63  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 122

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
            ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 123 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 182

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 183 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 242

Query: 241 QGTYELKPEYKKSVEDTGGE 261
           QGTYELKPEYKKSVE+TGGE
Sbjct: 243 QGTYELKPEYKKSVEETGGE 262

[Close]

BLAST of Cmc03g0082841 vs. NCBI nr
Match: XP_038884084.1 (transcription initiation factor IIF subunit beta-like [Benincasa hispida])

HSP 1 Score: 509.6 bits (1311), Expect = 1.6e-140
Identity = 256/260 (98.46%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60
           MED++G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDENG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 261
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 259

[Close]

BLAST of Cmc03g0082841 vs. NCBI nr
Match: XP_023002475.1 (transcription initiation factor IIF subunit beta [Cucurbita maxima])

HSP 1 Score: 502.7 bits (1293), Expect = 1.9e-138
Identity = 251/260 (96.54%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60
           MED++G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDENG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKDKRKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           Q +VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QPEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 261
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 259

[Close]

BLAST of Cmc03g0082841 vs. ExPASy Swiss-Prot
Match: O94424 (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfg2 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.9e-21
Identity = 82/260 (31.54%), Postives = 127/260 (48.85%), Query Frame = 0


Query: 2   EDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDE 61
           E+D      + +LD G+    VWL+K P  +   W + P  D   L  V +  D +Q   
Sbjct: 11  EEDDRYEDDAGDLDLGQIGSRVWLVKIPKFLMDKWNSIPEDDAANLGCVRVKNDEIQLLL 70

Query: 62  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE----ASQGKVSMEGKVEHKFD 121
            +S          E  +VPK ++L +   FV    VF E    +S    ++ G V H+ +
Sbjct: 71  QNS---------PENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECN 130

Query: 122 MKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLIS-STSKEKKK 181
           + P     + Y ++ ++R   +    R++Q+ID DRG  +   PG +G  S ST+   + 
Sbjct: 131 VSPVIN--DDYRRVMQKRALAASAPKRKVQMID-DRGGSLL-APGTLGSRSRSTTSFIRN 190

Query: 182 VAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYN 241
           V P     +K +R  R EL DI+FK FE    W LK L +   QP  +LKE+L+ + + N
Sbjct: 191 VKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILN 250

Query: 242 KRGTNQGTYELKPEYKKSVE 256
           KRG     Y LKPEYK +++
Sbjct: 251 KRGPYALKYSLKPEYKGTMD 257

[Close]

BLAST of Cmc03g0082841 vs. ExPASy Swiss-Prot
Match: Q2T9L9 (General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.8e-17
Identity = 71/247 (28.74%), Postives = 116/247 (46.96%), Query Frame = 0


Query: 13  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMA 72
           +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A
Sbjct: 8   DLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKN----QGRTEVSFTLNEDLA 67

Query: 73  GT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKVSMEGKVEHKFDMKPHSENL 132
              + G  P S S      FV        + VF+E+S  K+S+EG V  + + +P +   
Sbjct: 68  NIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAN-- 127

Query: 133 EMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDV 192
           E Y +L R +  +S    R  Q +D     + +P+      I    K+K+        D 
Sbjct: 128 ENYMRLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKE--------DG 187

Query: 193 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 252
           KR R D+  + D++F  FE+   + LK LV  T QP  +LK+IL E+ V N +G ++ T+
Sbjct: 188 KRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTW 240

[Close]

BLAST of Cmc03g0082841 vs. ExPASy Swiss-Prot
Match: Q01750 (General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.8e-17
Identity = 72/247 (29.15%), Postives = 115/247 (46.56%), Query Frame = 0


Query: 13  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMA 72
           +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A
Sbjct: 8   DLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKN----QGRTEVSFTLNEDLA 67

Query: 73  GT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKVSMEGKVEHKFDMKPHSENL 132
              + G  P S S      FV        + VF+E+S  K+S+EG V  + + +P +   
Sbjct: 68  NIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAS-- 127

Query: 133 EMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDV 192
           E Y KL R +  +S    R  Q  D     + +P+      I    K+K+        D 
Sbjct: 128 ENYMKLKRLQIEESSKPVRLSQQADKVVTTNYKPVANHQYNIEYERKKKE--------DG 187

Query: 193 KRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTY 252
           KR R D+  + D++F  FE+   + LK LV  T QP  +LKEIL E+ + N +G ++ T+
Sbjct: 188 KRARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTW 240

[Close]

BLAST of Cmc03g0082841 vs. ExPASy Swiss-Prot
Match: Q54KT7 (General transcription factor IIF subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2f2 PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-16
Identity = 70/245 (28.57%), Postives = 113/245 (46.12%), Query Frame = 0


Query: 14  LDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAG 73
           ++T  AD  VWL+K P  +++SWQ         + +  +    ++  ++ SL +     G
Sbjct: 13  VNTDNADNQVWLIKVPKFLSESWQ--------KIGQGEIGQIHIKGGDNISLSY-----G 72

Query: 74  TETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRE 133
            + G   +  +     D  P+ +FSE   G +++EG +  + D+K   E+   Y  L + 
Sbjct: 73  PDVGQEFQLITTANTLDNQPLKIFSEDKDGALALEGNIGLRCDIKIDVES-PQYRDLMKS 132

Query: 134 RTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISST--SKEKKKVAPV-----KQSDVKR 193
           R  K   K R  QVID               L + T     K KV+ V     K+S  K+
Sbjct: 133 RHTKYNTKTRMTQVIDESE------------LFTPTLFDANKVKVSTVGITQKKKSTDKK 192

Query: 194 TRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYEL 252
            +    E+ D++F  F  + +  LK L   T+QP   LK IL ++C+ NKRG     YEL
Sbjct: 193 EKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQPKNHLKTILEKVCILNKRGPYHHLYEL 231

[Close]

BLAST of Cmc03g0082841 vs. ExPASy Swiss-Prot
Match: Q8R0A0 (General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.7e-16
Identity = 72/246 (29.27%), Postives = 120/246 (48.78%), Query Frame = 0


Query: 13  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMA 72
           +L   K +  VWL+K P  +++ W     S    + K+ ++ +  +++ S +L   +   
Sbjct: 8   DLTGAKQNTGVWLVKVPKYLSQQWA--KASGRGEVGKLRIAKNQGRTEVSFTLNEDLANI 67

Query: 73  GTETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKVSMEGKVEHKFDMKPHSENLE 132
             + G  P S S      FV        + VF+E+S  K+S+EG V  + + +P +   E
Sbjct: 68  -HDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAECRPAAS--E 127

Query: 133 MYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVK 192
            Y KL R +  +S    R  Q +D     + +P+      I    K+K+        D K
Sbjct: 128 NYMKLKRLQIEESSKPVRLSQQLDKVVTTNYKPVANHQYNIEYERKKKE--------DGK 187

Query: 193 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 252
           R R D+  + D++F  FE+   + LK LV  T QP  +LKEIL E+ + N +G ++ T+E
Sbjct: 188 RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWE 240

[Close]

BLAST of Cmc03g0082841 vs. ExPASy TrEMBL
Match: A0A5A7VAJ9 (Transcription initiation factor IIF subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005300 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 2.6e-144
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60
           MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 261
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of Cmc03g0082841 vs. ExPASy TrEMBL
Match: A0A1S3BBV5 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103488014 PE=3 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 2.6e-144
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60
           MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 261
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of Cmc03g0082841 vs. ExPASy TrEMBL
Match: A0A0A0LRL0 (Transcription initiation factor IIF subunit beta OS=Cucumis sativus OX=3659 GN=Csa_2G363560 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.3e-143
Identity = 258/260 (99.23%), Postives = 259/260 (99.62%), Query Frame = 0


Query: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60
           MED+HGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSD
Sbjct: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 261
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 260

[Close]

BLAST of Cmc03g0082841 vs. ExPASy TrEMBL
Match: A0A6J1CTB7 (Transcription initiation factor IIF subunit beta OS=Momordica charantia OX=3673 GN=LOC111014025 PE=3 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 7.7e-141
Identity = 253/260 (97.31%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60
           MED+HG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSD
Sbjct: 3   MEDEHGGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDTLPLAKVILSLDPLQSD 62

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPH
Sbjct: 63  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 122

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
            ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK
Sbjct: 123 GENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 182

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 183 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 242

Query: 241 QGTYELKPEYKKSVEDTGGE 261
           QGTYELKPEYKKSVE+TGGE
Sbjct: 243 QGTYELKPEYKKSVEETGGE 262

[Close]

BLAST of Cmc03g0082841 vs. ExPASy TrEMBL
Match: A0A6J1KP21 (Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111496301 PE=3 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 9.4e-139
Identity = 251/260 (96.54%), Postives = 258/260 (99.23%), Query Frame = 0


Query: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60
           MED++G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSD
Sbjct: 1   MEDENG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGK+SMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKMSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVK 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVK
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKDKRKVAPVK 180

Query: 181 QSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240
           Q +VKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN
Sbjct: 181 QPEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTN 240

Query: 241 QGTYELKPEYKKSVEDTGGE 261
           QGTYELKPEYKKSVEDTGGE
Sbjct: 241 QGTYELKPEYKKSVEDTGGE 259

[Close]

BLAST of Cmc03g0082841 vs. TAIR 10
Match: AT1G75510.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 351.7 bits (901), Expect = 5.1e-97
Identity = 181/270 (67.04%), Postives = 211/270 (78.15%), Query Frame = 0


Query: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS---------DPLPLAKVI 60
           MED H       NLD  K+DRS+WLMKCP++V K+W     S          P  +AK++
Sbjct: 1   MEDIH-------NLDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIV 60

Query: 61  LSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKV 120
             +DPL+ D  S  +FKM M G E GN+PK ++LNMF DFVPM  FS+ +QG  + EGKV
Sbjct: 61  REVDPLRDD--SPPEFKMYMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKV 120

Query: 121 EHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK 180
           +HKFDMKP+ E +E Y +LCRERT+K+MVKNRQIQVIDNDRGVHMRPMPGM+GL+SS SK
Sbjct: 121 DHKFDMKPYGETIEEYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSK 180

Query: 181 EKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNEL 240
           EK+K  PVKQ++VKRTRRDRGELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNEL
Sbjct: 181 EKRKPPPVKQTEVKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNEL 240

Query: 241 CVYNKRGTNQGTYELKPEYKKSVE-DTGGE 261
           CVYNKRG+NQGTYELKPEYKKS E DTGG+
Sbjct: 241 CVYNKRGSNQGTYELKPEYKKSAEDDTGGQ 261

[Close]

BLAST of Cmc03g0082841 vs. TAIR 10
Match: AT3G52270.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 294.7 bits (753), Expect = 7.5e-80
Identity = 149/251 (59.36%), Postives = 196/251 (78.09%), Query Frame = 0


Query: 14  LDTGKADRSVWLMKCPLLVAKSWQAHP-------PSDPL-PLAKVILSLDPLQSDESSSL 73
           L+TG A+RS+ LMK P LVA S Q+H        P DP  P AKVIL +DPL + E    
Sbjct: 23  LETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPL-AHEDEGT 82

Query: 74  QFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLE 133
           QF ME+A  ++GN+P+ ++L+M KDF+PM VF E+S GK+S+EGK+++KFDM+PH+EN+E
Sbjct: 83  QFVMELARADSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENIE 142

Query: 134 MYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVK 193
            YG+LCRERTNK M KNRQIQVIDN RG+HMRPMPGM+  I + + EKKK+   + S++K
Sbjct: 143 SYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPGMI--IPTAAPEKKKLTN-RTSEMK 202

Query: 194 RTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYE 253
           RTRRDR E+E++MF LFERQ NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTYE
Sbjct: 203 RTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPEQFLKDLLKDLCIYNNKGSNQGTYE 262

Query: 254 LKPEYKKSVED 257
           LKPEYKK+ ++
Sbjct: 263 LKPEYKKATQE 269

The following BLAST results are available for this feature:

BLAST of Cmc03g0082841 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444765.1	5.3e-144	100.00	PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo] ...	[more]
XP_004152667.1	1.3e-142	99.23	transcription initiation factor IIF subunit beta [Cucumis sativus] >KGN62646.1 h...	[more]
XP_022144312.1	1.6e-140	97.31	transcription initiation factor IIF subunit beta [Momordica charantia]	[more]
XP_038884084.1	1.6e-140	98.46	transcription initiation factor IIF subunit beta-like [Benincasa hispida]	[more]
XP_023002475.1	1.9e-138	96.54	transcription initiation factor IIF subunit beta [Cucurbita maxima]	[more]

BLAST of Cmc03g0082841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O94424	5.9e-21	31.54	Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (s...	[more]
Q2T9L9	8.8e-17	28.74	General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 ...	[more]
Q01750	8.8e-17	29.15	General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2...	[more]
Q54KT7	3.3e-16	28.57	General transcription factor IIF subunit 2 OS=Dictyostelium discoideum OX=44689 ...	[more]
Q8R0A0	5.7e-16	29.27	General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE...	[more]

BLAST of Cmc03g0082841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAJ9	2.6e-144	100.00	Transcription initiation factor IIF subunit beta OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BBV5	2.6e-144	100.00	Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0LRL0	6.3e-143	99.23	Transcription initiation factor IIF subunit beta OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A6J1CTB7	7.7e-141	97.31	Transcription initiation factor IIF subunit beta OS=Momordica charantia OX=3673 ...	[more]
A0A6J1KP21	9.4e-139	96.54	Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Cmc03g0082841 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75510.1	5.1e-97	67.04	Transcription initiation factor IIF, beta subunit	[more]
AT3G52270.1	7.5e-80	59.36	Transcription initiation factor IIF, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040504	TFIIF, beta subunit, N-terminal	PFAM	PF17683	TFIIF_beta_N	coord: 21..135 e-value: 2.5E-6 score: 28.2
IPR040450	TFIIF beta subunit, HTH domain	PFAM	PF02270	TFIIF_beta	coord: 188..251 e-value: 1.2E-20 score: 73.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 186..253 e-value: 3.9E-35 score: 121.8
None	No IPR available	PANTHER	PTHR10445:SF2	TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT	coord: 1..257
None	No IPR available	CDD	cd07980	TFIIF_beta	coord: 13..119 e-value: 5.23823E-20 score: 80.834
IPR003196	Transcription initiation factor IIF, beta subunit	PANTHER	PTHR10445	GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2	coord: 1..257
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 186..252
IPR011039	Transcription Factor IIF, Rap30/Rap74, interaction	SUPERFAMILY	50916	Rap30/74 interaction domains	coord: 11..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0082841.1	Cmc03g0082841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
biological_process	GO:0006366	transcription by RNA polymerase II
cellular_component	GO:0005674	transcription factor TFIIF complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003743	translation initiation factor activity