Cmc03g0079281 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0079281
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	40S ribosomal protein S11
Location	CMiso1.1chr03: 25615999 .. 25617893 (-)
RNA-Seq Expression	Cmc03g0079281
Synteny	Cmc03g0079281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCCTCCTCACTCTCTGCTGCCTCTAGGGTTTTTACTTCGTATTAGACTCTGCGGCTTAGGCTTCTATCGGATCTTCGAAACTCTAACAATGGCTGAACAGGTATGGATGTTGTTCTTCCCCCACCGTTTATTCACATTCAAACAATGTCTGATTGGCCCTTGCATTTTTTTTAAAACTCTATTCTATACTGCAGACGGAGAAGGCTTTCCTGAAGCAGCCCAAGGTGTTCCTTAGGTAGGAAATCCTCTGGAAATTGTGTAGTTTTTCACTTTAAAACATGTTTAACGTTTTACTTGATGCGGGAAAGGCTGTTTTATTTCCGGTGTCTAATATACTACTACGTCTGCATTGAATCGTTGTTTCCAGCTCGAAGAAATCGGGCAAAGGAAAGAGGCCAGGAAAAGGAGGAAATCGGTTCTGGAAGAGCATTGGTTTGGGGTTCAAAACTCCCAGAGATGCAATTGAAGGTCGTATTCTCTTATCTTTCTGATCCGTGCTTTAACTTTACTTATTCTTGAGTTTGTTCGTCCATAGAGACTAGTATGCTGAAGTATTCCTACAGTTTGTTCTGTCTTTCAATGAACTGTCCCAGCAACATATAGTAGTAGACGAGAAGACGGTTCTTTTTTGCCTGAATTGGTGTGTTTACACACTCAGTTTTCGCTTCAATTTCACTGGTCTAAATCAGCAATTGGTATGCTGTTGGGCCTGTCATTAGTTTTTGTTTATTTGGTTCAAACTAGGGATTCGCGTGTGTGTATTAAATTGCAATTTCTGATAGAGGCCTTGAAAATGTCAAGTTATTCGTTGCTCGTTCTTAATTAGAGTTCATTGGACTATTTTCCCGTATCATTGCCCTCAGCTTCTTTTTAGCTTCAATTGTTGCACTTCCCAATCGAATTGCTAGTCAACGTTATCTGCTCAATTTTTTCATATATAGTTAACGAATTCTACGAAACAATGCGGCTCTGTCCTTTGCATCATTTGATCTGGCCAATGGAGAAGTTTGATTTGCATTCATCCTATGACACCATTCAAACTAAAATTTTAATTTAAAATTTGGTGTTTATGTTGCAAGTGAAGTTTAGTAATCGGTAGGTGGTGTGGAGTGTTATTTTGGACTTTTATTCTCAGCGCTGCTCTCTCATCTTAATTTTACCAAAGACTGAAGAGTGTTTCTGCTGCAGGAACCTACATTGATAAGAAGTGTCCATTCACTGGCACTGTTTCTATTAGGGGGCGTATTCTTGCTGGTACCTGCCACAGTGCTAAGATGGTCAGAACTATCATTGTTAGACGTAATTATCTTCACTATGTGAAGAAATATCAAAGGTGAGAAACTAATACTCGAATGTTCTTGTTTTTTATCTATTGTTTGATATTATGCTGACACATGTTATTTCTTTATAGGTACGAAAAGAGACACTCTAACATCCCAGCACACATAGCTCCTTGCTTTAGAGTTAAAGAGGGAGACCATGTCATCATTGGCCAGTGCAGGTTTATACATGAGCTTCCTATATACCTCTGGCTATATACTCTTGCACCTTTATCTAGTCTTTTTCTTAATGCAATTCTTTGCAGGCCCTTGTCAAAGACCGTGAGGTTTAATGTATTGAAAGTGATTCCTGCTGGATCATCCACAGGTGGAAAGAAGGCTTTCGCAGGGATTTAAGTCCAGAATTTTCAGGTCCCATATTTGTTTATGTTAAGGGGATGATATGTTAGCATGAGCTTTTCTTCAGCTAGATGTTCTTTTCACTTTATTTATTAACTGTATTTCATTATTGTGATACTATTGCAATTTTGATTCCCTTGAGTTTTGCTTTATCCATCAGTATCAGTACCTTCTCTGTTCTTGGTTTCTCCAATAGTATTTTCTTCTTACGTC

mRNA sequence

CCTTCCTCCTCACTCTCTGCTGCCTCTAGGGTTTTTACTTCGTATTAGACTCTGCGGCTTAGGCTTCTATCGGATCTTCGAAACTCTAACAATGGCTGAACAGACGGAGAAGGCTTTCCTGAAGCAGCCCAAGGTGTTCCTTAGCTCGAAGAAATCGGGCAAAGGAAAGAGGCCAGGAAAAGGAGGAAATCGGTTCTGGAAGAGCATTGGTTTGGGGTTCAAAACTCCCAGAGATGCAATTGAAGGAACCTACATTGATAAGAAGTGTCCATTCACTGGCACTGTTTCTATTAGGGGGCGTATTCTTGCTGGTACCTGCCACAGTGCTAAGATGGTCAGAACTATCATTGTTAGACGTAATTATCTTCACTATGTGAAGAAATATCAAAGGTACGAAAAGAGACACTCTAACATCCCAGCACACATAGCTCCTTGCTTTAGAGTTAAAGAGGGAGACCATGTCATCATTGGCCAGTGCAGGCCCTTGTCAAAGACCGTGAGGTTTAATGTATTGAAAGTGATTCCTGCTGGATCATCCACAGGTGGAAAGAAGGCTTTCGCAGGGATTTAAGTCCAGAATTTTCAGGTCCCATATTTGTTTATGTTAAGGGGATGATATGTTAGCATGAGCTTTTCTTCAGCTAGATGTTCTTTTCACTTTATTTATTAACTGTATTTCATTATTGTGATACTATTGCAATTTTGATTCCCTTGAGTTTTGCTTTATCCATCAGTATCAGTACCTTCTCTGTTCTTGGTTTCTCCAATAGTATTTTCTTCTTACGTC

Coding sequence (CDS)

ATGGCTGAACAGACGGAGAAGGCTTTCCTGAAGCAGCCCAAGGTGTTCCTTAGCTCGAAGAAATCGGGCAAAGGAAAGAGGCCAGGAAAAGGAGGAAATCGGTTCTGGAAGAGCATTGGTTTGGGGTTCAAAACTCCCAGAGATGCAATTGAAGGAACCTACATTGATAAGAAGTGTCCATTCACTGGCACTGTTTCTATTAGGGGGCGTATTCTTGCTGGTACCTGCCACAGTGCTAAGATGGTCAGAACTATCATTGTTAGACGTAATTATCTTCACTATGTGAAGAAATATCAAAGGTACGAAAAGAGACACTCTAACATCCCAGCACACATAGCTCCTTGCTTTAGAGTTAAAGAGGGAGACCATGTCATCATTGGCCAGTGCAGGCCCTTGTCAAAGACCGTGAGGTTTAATGTATTGAAAGTGATTCCTGCTGGATCATCCACAGGTGGAAAGAAGGCTTTCGCAGGGATTTAA

Protein sequence

MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI

Homology

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BLAST of Cmc03g0079281 vs. NCBI nr
Match: XP_008445242.1 (PREDICTED: 40S ribosomal protein S11 [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 4.4e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 159

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BLAST of Cmc03g0079281 vs. NCBI nr
Match: XP_038884265.1 (40S ribosomal protein S11 [Benincasa hispida])

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-84
Identity = 158/159 (99.37%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFTGI 159

[Close]

BLAST of Cmc03g0079281 vs. NCBI nr
Match: XP_004138716.1 (40S ribosomal protein S11 [Cucumis sativus] >KGN62969.1 hypothetical protein Csa_022406 [Cucumis sativus])

HSP 1 Score: 322.8 bits (826), Expect = 1.7e-84
Identity = 158/159 (99.37%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS GGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSAGGKKAFAGI 159

[Close]

BLAST of Cmc03g0079281 vs. NCBI nr
Match: KAA0064909.1 (40S ribosomal protein S11 [Cucumis melo var. makuwa])

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-83
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEG-TYIDKKC 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEG TYIDKKC
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGRTYIDKKC 60

Query: 61  PFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVK 120
           PFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVK
Sbjct: 61  PFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVK 120

Query: 121 EGDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           EGDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI
Sbjct: 121 EGDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160

[Close]

BLAST of Cmc03g0079281 vs. NCBI nr
Match: XP_022132263.1 (40S ribosomal protein S11 [Momordica charantia] >XP_022951457.1 40S ribosomal protein S11 [Cucurbita moschata] >XP_022961674.1 40S ribosomal protein S11 [Cucurbita moschata] >XP_023002533.1 40S ribosomal protein S11 [Cucurbita maxima] >XP_023537513.1 40S ribosomal protein S11 [Cucurbita pepo subsp. pepo] >XP_023545624.1 40S ribosomal protein S11 [Cucurbita pepo subsp. pepo] >KAG6598560.1 40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020399.1 40S ribosomal protein S11-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 319.3 bits (817), Expect = 1.9e-83
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSST GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 159

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BLAST of Cmc03g0079281 vs. ExPASy Swiss-Prot
Match: P25460 (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 8.1e-82
Identity = 146/156 (93.59%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGK+PGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAF 157
           GDHVIIGQCRPLSKTVRFNV+KVIPAGS+  GKKAF
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAF 156

[Close]

BLAST of Cmc03g0079281 vs. ExPASy Swiss-Prot
Match: Q9M5M1 (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.4e-81
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL+SKK+GKGKRPGKGGNRFWKSIGLGFKTPR+AI+GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS G KKAF  I
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]

BLAST of Cmc03g0079281 vs. ExPASy Swiss-Prot
Match: P17093 (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 303.1 bits (775), Expect = 1.8e-81
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLS+KK+GKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHI+P FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+G KKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

[Close]

BLAST of Cmc03g0079281 vs. ExPASy Swiss-Prot
Match: P42733 (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 300.1 bits (767), Expect = 1.5e-80
Identity = 144/159 (90.57%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSK SGKGKRPGKGGNRFWK+IGLGFKTPR+AI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S  GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]

BLAST of Cmc03g0079281 vs. ExPASy Swiss-Prot
Match: P16181 (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.0e-80
Identity = 144/160 (90.00%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPR+AI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTG-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSS+  GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]

BLAST of Cmc03g0079281 vs. ExPASy TrEMBL
Match: A0A1S3BCY7 (40S ribosomal protein S11 OS=Cucumis melo OX=3656 GN=LOC103488328 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.1e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 159

[Close]

BLAST of Cmc03g0079281 vs. ExPASy TrEMBL
Match: A0A0A0LPP1 (Ribosomal_S17_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G382430 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 8.1e-85
Identity = 158/159 (99.37%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS GGKKAFAGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSAGGKKAFAGI 159

[Close]

BLAST of Cmc03g0079281 vs. ExPASy TrEMBL
Match: A0A5A7VHG4 (40S ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002270 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.3e-84
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEG-TYIDKKC 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEG TYIDKKC
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGRTYIDKKC 60

Query: 61  PFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVK 120
           PFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVK
Sbjct: 61  PFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVK 120

Query: 121 EGDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           EGDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI
Sbjct: 121 EGDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160

[Close]

BLAST of Cmc03g0079281 vs. ExPASy TrEMBL
Match: A0A6J1HEQ3 (40S ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=LOC111462372 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.0e-84
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSST GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 159

[Close]

BLAST of Cmc03g0079281 vs. ExPASy TrEMBL
Match: A0A6J1KTV2 (40S ribosomal protein S11 OS=Cucurbita maxima OX=3661 GN=LOC111496347 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.0e-84
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSST GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 159

[Close]

BLAST of Cmc03g0079281 vs. TAIR 10
Match: AT5G23740.1 (ribosomal protein S11-beta )

HSP 1 Score: 300.1 bits (767), Expect = 1.1e-81
Identity = 144/159 (90.57%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSK SGKGKRPGKGGNRFWK+IGLGFKTPR+AI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S  GKKAF G+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]

BLAST of Cmc03g0079281 vs. TAIR 10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-81
Identity = 144/160 (90.00%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPR+AI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTG-GKKAFAGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSS+  GKKAF G+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]

BLAST of Cmc03g0079281 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 297.4 bits (760), Expect = 7.0e-81
Identity = 143/159 (89.94%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPR+AIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 160
           GD V IGQCRPLSKTVRFNVLKVIPAGSS+ GKKAF G+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

The following BLAST results are available for this feature:

BLAST of Cmc03g0079281 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445242.1	4.4e-85	100.00	PREDICTED: 40S ribosomal protein S11 [Cucumis melo]	[more]
XP_038884265.1	1.3e-84	99.37	40S ribosomal protein S11 [Benincasa hispida]	[more]
XP_004138716.1	1.7e-84	99.37	40S ribosomal protein S11 [Cucumis sativus] >KGN62969.1 hypothetical protein Csa...	[more]
KAA0064909.1	1.1e-83	99.38	40S ribosomal protein S11 [Cucumis melo var. makuwa]	[more]
XP_022132263.1	1.9e-83	98.11	40S ribosomal protein S11 [Momordica charantia] >XP_022951457.1 40S ribosomal pr...	[more]

BLAST of Cmc03g0079281 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25460	8.1e-82	93.59	40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1	[more]
Q9M5M1	1.4e-81	91.82	40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1	[more]
P17093	1.8e-81	91.82	40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2	[more]
P42733	1.5e-80	90.57	40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2	[more]
P16181	2.0e-80	90.00	40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1	[more]

BLAST of Cmc03g0079281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BCY7	2.1e-85	100.00	40S ribosomal protein S11 OS=Cucumis melo OX=3656 GN=LOC103488328 PE=3 SV=1	[more]
A0A0A0LPP1	8.1e-85	99.37	Ribosomal_S17_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G38...	[more]
A0A5A7VHG4	5.3e-84	99.38	40S ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A6J1HEQ3	9.0e-84	98.11	40S ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=LOC111462372 PE=3 SV=...	[more]
A0A6J1KTV2	9.0e-84	98.11	40S ribosomal protein S11 OS=Cucurbita maxima OX=3661 GN=LOC111496347 PE=3 SV=1	[more]

BLAST of Cmc03g0079281 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23740.1	1.1e-81	90.57	ribosomal protein S11-beta	[more]
AT3G48930.1	1.4e-81	90.00	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G30800.1	7.0e-81	89.94	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 131..138 score: 73.25 coord: 121..131 score: 60.91 coord: 88..111 score: 37.33
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 74..142 e-value: 1.3E-25 score: 89.3
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 1..159
IPR032440	40S ribosomal protein S11, N-terminal	PFAM	PF16205	Ribosomal_S17_N	coord: 4..72 e-value: 1.8E-31 score: 108.3
None	No IPR available	GENE3D	2.40.50.1000		coord: 1..158 e-value: 1.8E-82 score: 277.0
None	No IPR available	PANTHER	PTHR10744:SF24	40S RIBOSOMAL PROTEIN S11-1-RELATED	coord: 1..159
IPR028333	Ribosomal protein S17, archaeal/eukaryotic	TIGRFAM	TIGR03630	TIGR03630	coord: 55..143 e-value: 7.1E-34 score: 113.9
IPR019979	Ribosomal protein S17, conserved site	PROSITE	PS00056	RIBOSOMAL_S17	coord: 121..133
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 68..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0079281.1	Cmc03g0079281.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome