Cmc03g0078881 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0078881
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribosomal protein S19
Location	CMiso1.1chr03: 25353683 .. 25355582 (-)
RNA-Seq Expression	Cmc03g0078881
Synteny	Cmc03g0078881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGGGCAGAAGGAAAACTCAGGCCCAATCAATCTTGGAAAGTCCAACAATAGTAAAACCCAATGATTTAACTTAAAAAAAAAAAAAAAAAGGAAACCCTAGATTCCACGATTCTTTCATCTTCTTCTTCAACTCTCACGTCTCTGCCTTTCACAAATCTCTAATCTTCATTCTTCACAGTATCATCTTTCTCTTCGTTCATGTCGCCACGATCTATATGGAAGGGCGGTTTTGTTGATGCATTCCTGATGAAAATGAAGAAGAATGTAGAACCTCTTATGAACAGGAAAATTTGGTCACGTGGATCTATGATTCTGCCGGAATTCGTTGGTAGCACCGTACGAGTTTACAATGGGAAAAATTTTGTTCGTTGTAAGATCACTGAAGGAAGAGTTGGTCATAAGTTTGGAGAGTTTGCTATGACACGGAAACGAAGAATTGCGAGATCAAATAGTGCACCGGCAAAAAGAGGGGGGAAAAAGTGAAGTTCAAGCGCATATGCCATTTGGTATTCACTTTTTCTTTCTTATTCTCAATTCAAGGTTAGTAAAATCAGTCTGGTGCTGTCAATGTAGTTTGTGTTTTCCTATTTTGCGCCACAGACCGTCACTGTTTTCGTTTGATATCGCCAAAGCTGTTATTGGTTTCTGTATGATTTTGATATACAACTGTATTTCAAATTCTATATGAGTTCTGTTCTACCATGCTTTGACAGAACTATCTCGAGATATTGGGGTAATAACAATTTTTTGATCTTGAAATTCTGAAATTATAAGGACGTCCATGTTACAAGATAGCCTTTTTACTTTTGAAAACTTGTGTTAAATGTTGATACAATAAATTTTCCTCGTTAATTCATTCATATACTTGAACTTTTCATCATTTTTCGTTTCTTCAAGCAAGTTCTTTAAAAACTACATTTTTTGGTATTCACAAACTGGACATAGTTTTTACAAACGCATACCAAAACAAAGGTAAAAATCAGAAACAAAAAATTAAATGGTTATTGAAGGAACCATAATTTAAAATCAGAATTTCTTTTTTTAAGTTCAACAAAGTAAAAGGGTGATGCTCCTCATTCTAACTATAAGTAATCATATGCTAATTGAAAGACCCTTTTTCAAAAGTGCACAAACAAATTTATAGTCATTTGAACAAGAAGAATGGGTCATTCAAGACTGCCTATTAGTAAAATAAACACTATTATTTACTATTTCTTATAGTTTTTACTATTTTACCTTTACAGTGTTTATCATTTTTCATCTGATGCATAATATTATAATCCAAATTAAAATAATCAATACCCCTTATATTATATGTATTTATCTTGGATGCAATCTATCCAAGCATTCAATGTTTCATCTAAAATTATTGTAATCTATATATATATTTTAAAAAAAGTTTCTATTTTTGATATTTCTAGAGATAGGGTACTTGGCTTGAAATTTGTTCTCAGAACACCGATTTCTTTCTCGGAGGCAATGTCCGCCTCTTTCTTGCTCATCTTGGCATAGCTCTGCTCGCATTAGTATCAACGAATTTTGTGTATGAGCTATGGTGGGTCGATGCCATTGTAGGCCATCAGTTGCCGAGGTGTAAGCTCCATTGGCTCCAGGGGGAACTGAGAAGAACGGTAGCTTCAGTTGAAATGGTGAATTCAACCATTTTTCATATTCATTCTCATTCGAATGGGGAGAAAAGGCAAAGAATTTTGAATATGTCCCATTTGGAATAATTTGACTTGATAACCCTTGCACTAATGAAAAATACTTATTGATCCATCAACTAATAGTTAGTCTCAGTTTGTAGCAGTTCAGTAAATTGAAGAAATTATTTTAAATGAAATTTTTTTTGAAAATATTAAAATAAAATATCAAAATCTATTGTGACAGACCAAG

mRNA sequence

AAAAAGGGCAGAAGGAAAACTCAGGCCCAATCAATCTTGGAAAGTCCAACAATAGTAAAACCCAATGATTTAACTTAAAAAAAAAAAAAAAAAGGAAACCCTAGATTCCACGATTCTTTCATCTTCTTCTTCAACTCTCACGTCTCTGCCTTTCACAAATCTCTAATCTTCATTCTTCACAGTATCATCTTTCTCTTCGTTCATGTCGCCACGATCTATATGGAAGGGCGGTTTTGTTGATGCATTCCTGATGAAAATGAAGAAGAATGTAGAACCTCTTATGAACAGGAAAATTTGGTCACGTGGATCTATGATTCTGCCGGAATTCGTTGGTAGCACCGTACGAGTTTACAATGGGAAAAATTTTGTTCGTTGTAAGATCACTGAAGGAAGAGTTGGTCATAAGTTTGGAGAGTTTGCTATGACACGGAAACGAAGAATTGCGAGATCAAATAGTGCACCGGCAAAAAGAGGGGGGAAAAAGTGAAGTTCAAGCGCATATGCCATTTGGTATTCACTTTTTCTTTCTTATTCTCAATTCAAGGGTACTTGGCTTGAAATTTGTTCTCAGAACACCGATTTCTTTCTCGGAGGCAATGTCCGCCTCTTTCTTGCTCATCTTGGCATAGCTCTGCTCGCATTAGTATCAACGAATTTTGTGTATGAGCTATGGTGGGTCGATGCCATTGTAGGCCATCAGTTGCCGAGGTGTAAGCTCCATTGGCTCCAGGGGGAACTGAGAAGAACGGTAGCTTCAGTTGAAATGGTGAATTCAACCATTTTTCATATTCATTCTCATTCGAATGGGGAGAAAAGGCAAAGAATTTTGAATATGTCCCATTTGGAATAATTTGACTTGATAACCCTTGCACTAATGAAAAATACTTATTGATCCATCAACTAATAGTTAGTCTCAGTTTGTAGCAGTTCAGTAAATTGAAGAAATTATTTTAAATGAAATTTTTTTTGAAAATATTAAAATAAAATATCAAAATCTATTGTGACAGACCAAG

Coding sequence (CDS)

ATGTCGCCACGATCTATATGGAAGGGCGGTTTTGTTGATGCATTCCTGATGAAAATGAAGAAGAATGTAGAACCTCTTATGAACAGGAAAATTTGGTCACGTGGATCTATGATTCTGCCGGAATTCGTTGGTAGCACCGTACGAGTTTACAATGGGAAAAATTTTGTTCGTTGTAAGATCACTGAAGGAAGAGTTGGTCATAAGTTTGGAGAGTTTGCTATGACACGGAAACGAAGAATTGCGAGATCAAATAGTGCACCGGCAAAAAGAGGGGGGAAAAAGTGA

Protein sequence

MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKITEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGKK

Homology

[Close]

BLAST of Cmc03g0078881 vs. NCBI nr
Match: KAA0064877.1 (ribosomal protein S19 [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 5.3e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
          MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI
Sbjct: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGKK 95
          TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGKK
Sbjct: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGKK 94

[Close]

BLAST of Cmc03g0078881 vs. NCBI nr
Match: KAE8652214.1 (hypothetical protein Csa_022320 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 7.5e-40
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
          MSPRSIWKGGFVDAFL KMKKNVEPLMN+KIWSRGSMILPEFVGSTVRVYNGKNF+RCKI
Sbjct: 1  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRIARSNSAP 88
          TE RVGHKFGEFAMTRKR+IARSNSAP
Sbjct: 61 TEERVGHKFGEFAMTRKRKIARSNSAP 87

[Close]

BLAST of Cmc03g0078881 vs. NCBI nr
Match: YP_003587264.1 (ribosomal protein S19 [Citrullus lanatus] >ACV96651.1 ribosomal protein S19 [Citrullus lanatus])

HSP 1 Score: 150.6 bits (379), Expect = 6.8e-33
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
          M  RSIWKG FVDAFL++MKK  +PL+NRKIWSR S ILPEFV S+VR+YNGK FVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGG 93
          TEGRVGHKFGEFA+TRKRR++R+N  P K+GG
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKGG 92

[Close]

BLAST of Cmc03g0078881 vs. NCBI nr
Match: YP_003587380.1 (ribosomal protein S19 [Cucurbita pepo] >ACV96694.1 ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 147.5 bits (371), Expect = 5.7e-32
Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
          M  RSIWKG FVDAFL++MKK  +PL+NRKIWSR S ILPEFV S+VR+YNGK FVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGK 94
          TEGRVGHKFGEFA+TRKRR++R+N  P K+ G+
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGE 93

[Close]

BLAST of Cmc03g0078881 vs. NCBI nr
Match: YP_003587364.1 (ribosomal protein S19 [Cucurbita pepo] >ACV96693.1 ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 147.5 bits (371), Expect = 5.7e-32
Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
          M  RSIWKG FVDAFL++MKK  +PL+NRKIWSR S ILPEFV S+VR+YNGK FVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGK 94
          TEGRVGHKFGEFA+TRKRR++R+N  P K+ G+
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGE 93

[Close]

BLAST of Cmc03g0078881 vs. ExPASy Swiss-Prot
Match: P27527 (Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 5.9e-32
Identity = 66/94 (70.21%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
          M  RSIWKG FVDAFL++MKK  + L NRKIWSR S ILPEFV   VR+YNGK FVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDLLFNRKIWSRRSSILPEFVDCFVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGKK 95
          TEG+VGHKFGEFA TRKRR +R+N  P ++ GKK
Sbjct: 61 TEGKVGHKFGEFAFTRKRRPSRTNIGPGRKRGKK 94

[Close]

BLAST of Cmc03g0078881 vs. ExPASy Swiss-Prot
Match: P39697 (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-24
Identity = 56/77 (72.73%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
           M  RS+WK  FVDAFLMK KKN    +NRKIWSR S ILPE+V S VR+YNGK  VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMK-KKNA--ALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 61  TEGRVGHKFGEFAMTRK 78
           TEG+VGHKFGEFA TRK
Sbjct: 191 TEGKVGHKFGEFAFTRK 204

[Close]

BLAST of Cmc03g0078881 vs. ExPASy Swiss-Prot
Match: P26874 (Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS19 PE=3 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 4.9e-18
Identity = 48/86 (55.81%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 4  RSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKITEG 63
          RSIWKG FVD  L K KK     +  +IWSR S ILP+FVG   ++YNGK FV  KITE 
Sbjct: 3  RSIWKGPFVDTCLFKQKK-----IRWRIWSRRSCILPQFVGCYAQIYNGKGFVGLKITEE 62

Query: 64 RVGHKFGEFAMTRKRRIARSNSAPAK 90
           VGHKFGEFA TRK       + P+K
Sbjct: 63 MVGHKFGEFASTRKTSSLGKRALPSK 83

[Close]

BLAST of Cmc03g0078881 vs. ExPASy Swiss-Prot
Match: B6IRR0 (30S ribosomal protein S19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpsS PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-15
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 4  RSIWKGGFVDAFLMKMKKNVEPLMNR---KIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 63
          RS+WKG FVD +L+K  +           KIWSR S ILP+FVG T  VYNG+ F+   +
Sbjct: 3  RSVWKGPFVDGYLLKKAEKARASGRNEIIKIWSRRSTILPQFVGLTFGVYNGQKFLPVLV 62

Query: 64 TEGRVGHKFGEFAMTR 77
          TE  +GHKFGEF+ TR
Sbjct: 63 TENMIGHKFGEFSPTR 78

[Close]

BLAST of Cmc03g0078881 vs. ExPASy Swiss-Prot
Match: P50893 (Ribosomal protein S19, mitochondrial OS=Tetraselmis subcordiformis OX=3161 GN=RPS19 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.1e-15
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 4  RSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKITEG 63
          R+IWKG F+D F    +KN     N KI+SR S++ P+F+G  V +YNG  ++  KI E 
Sbjct: 3  RAIWKGPFIDPFF--FRKNGSSNSNNKIYSRRSVVSPKFIGREVEIYNGHKWITIKIKED 62

Query: 64 RVGHKFGEFAMTRKRRIARSNS 86
           +GHKFGEFA TRK  I +  +
Sbjct: 63 MIGHKFGEFAFTRKATIHKKKT 82

[Close]

BLAST of Cmc03g0078881 vs. ExPASy TrEMBL
Match: A0A5A7VCX8 (Ribosomal protein S19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001900 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
          MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI
Sbjct: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGKK 95
          TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGKK
Sbjct: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGKK 94

[Close]

BLAST of Cmc03g0078881 vs. ExPASy TrEMBL
Match: A0A0A0LPU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382770 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
          MSPRSIWKGGFVDAFL KMKKNVEPLMN+KIWSRGSMILPEFVGSTVRVYNGKNF+RCKI
Sbjct: 1  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGKK 95
          TE RVGHKFGEFAMTRKR+IARSNSAP KRGGKK
Sbjct: 61 TEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK 94

[Close]

BLAST of Cmc03g0078881 vs. ExPASy TrEMBL
Match: D5I3D4 (Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.3e-33
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
          M  RSIWKG FVDAFL++MKK  +PL+NRKIWSR S ILPEFV S+VR+YNGK FVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGG 93
          TEGRVGHKFGEFA+TRKRR++R+N  P K+GG
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKGG 92

[Close]

BLAST of Cmc03g0078881 vs. ExPASy TrEMBL
Match: D5I3F0 (Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.8e-32
Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
          M  RSIWKG FVDAFL++MKK  +PL+NRKIWSR S ILPEFV S+VR+YNGK FVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGK 94
          TEGRVGHKFGEFA+TRKRR++R+N  P K+ G+
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGE 93

[Close]

BLAST of Cmc03g0078881 vs. ExPASy TrEMBL
Match: D5I3G6 (Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.8e-32
Identity = 68/93 (73.12%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1  MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
          M  RSIWKG FVDAFL++MKK  +PL+NRKIWSR S ILPEFV S+VR+YNGK FVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRIARSNSAPAKRGGK 94
          TEGRVGHKFGEFA+TRKRR++R+N  P K+ G+
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGE 93

[Close]

BLAST of Cmc03g0078881 vs. TAIR 10
Match: AT5G47320.1 (ribosomal protein S19 )

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-25
Identity = 56/77 (72.73%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1   MSPRSIWKGGFVDAFLMKMKKNVEPLMNRKIWSRGSMILPEFVGSTVRVYNGKNFVRCKI 60
           M  RS+WK  FVDAFLMK KKN    +NRKIWSR S ILPE+V S VR+YNGK  VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMK-KKNA--ALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 61  TEGRVGHKFGEFAMTRK 78
           TEG+VGHKFGEFA TRK
Sbjct: 191 TEGKVGHKFGEFAFTRK 204

[Close]

BLAST of Cmc03g0078881 vs. TAIR 10
Match: ATCG00820.1 (ribosomal protein S19 )

HSP 1 Score: 51.6 bits (122), Expect = 4.0e-07
Identity = 29/90 (32.22%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 4  RSIWKGGFVDAFLMKMKKNVEPLMNRKI---WSRGSMILPEFVGSTVRVYNGKNFVRCKI 63
          RS+ K  FV   L++  + +     ++I   WSR S I+P  +G T+ ++NG+  +   I
Sbjct: 3  RSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYI 62

Query: 64 TEGRVGHKFGEFAMTRKRRIARSNSAPAKR 91
           +  VGHK GEF+ T   R    N   ++R
Sbjct: 63 IDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92

[Close]

BLAST of Cmc03g0078881 vs. TAIR 10
Match: AT5G09490.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.9e-05
Identity = 19/44 (43.18%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 34  RGSMILPEFVGSTVRVYNGKNFVRCKITEGRVGHKFGEFAMTRK 78
           R  +I+PE +GS + VYNGK F + +I    +GH   EF++T K
Sbjct: 88  RNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYK 131

[Close]

BLAST of Cmc03g0078881 vs. TAIR 10
Match: AT1G04270.2 (cytosolic ribosomal protein S15 )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 23/69 (33.33%), Postives = 36/69 (52.17%), Query Frame = 0


Query: 14  AFLMKMKKNVEPLMNRK-----IWSRGSMILPEFVGSTVRVYNGKNFVRCKITEGRVGHK 73
           A + K++K  E     K        R  +I+PE +GS + VYNGK F + +I    +GH 
Sbjct: 62  ALIKKLRKKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 121

Query: 74  FGEFAMTRK 78
             EF+++ K
Sbjct: 122 LAEFSISYK 130

[Close]

BLAST of Cmc03g0078881 vs. TAIR 10
Match: AT5G63070.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 20/45 (44.44%), Postives = 27/45 (60.00%), Query Frame = 0


Query: 34  RGSMILPEFVGSTVRVYNGKNFVRCKITEGRVGHKFGEFAMTRKR 79
           R  +I+PE +GS V V+NGK F    I    +GH   EF+MT K+
Sbjct: 92  RNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTCKK 136

The following BLAST results are available for this feature:

BLAST of Cmc03g0078881 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064877.1	5.3e-46	100.00	ribosomal protein S19 [Cucumis melo var. makuwa]	[more]
KAE8652214.1	7.5e-40	94.25	hypothetical protein Csa_022320 [Cucumis sativus]	[more]
YP_003587264.1	6.8e-33	75.00	ribosomal protein S19 [Citrullus lanatus] >ACV96651.1 ribosomal protein S19 [Cit...	[more]
YP_003587380.1	5.7e-32	73.12	ribosomal protein S19 [Cucurbita pepo] >ACV96694.1 ribosomal protein S19 [Cucurb...	[more]
YP_003587364.1	5.7e-32	73.12	ribosomal protein S19 [Cucurbita pepo] >ACV96693.1 ribosomal protein S19 [Cucurb...	[more]

BLAST of Cmc03g0078881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27527	5.9e-32	70.21	Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV...	[more]
P39697	2.7e-24	72.73	40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P26874	4.9e-18	55.81	Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS19 P...	[more]
B6IRR0	3.9e-15	51.32	30S ribosomal protein S19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
P50893	5.1e-15	46.34	Ribosomal protein S19, mitochondrial OS=Tetraselmis subcordiformis OX=3161 GN=RP...	[more]

BLAST of Cmc03g0078881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCX8	2.6e-46	100.00	Ribosomal protein S19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A0A0LPU9	2.0e-43	93.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382770 PE=3 SV=1	[more]
D5I3D4	3.3e-33	75.00	Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-2 PE=3 SV=1	[more]
D5I3F0	2.8e-32	73.12	Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-1 PE=3 SV=1	[more]
D5I3G6	2.8e-32	73.12	Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-2 PE=3 SV=1	[more]

BLAST of Cmc03g0078881 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47320.1	1.9e-25	72.73	ribosomal protein S19	[more]
ATCG00820.1	4.0e-07	32.22	ribosomal protein S19	[more]
AT5G09490.1	4.9e-05	43.18	Ribosomal protein S19 family protein	[more]
AT1G04270.2	1.1e-04	33.33	cytosolic ribosomal protein S15	[more]
AT5G63070.1	1.4e-04	44.44	Ribosomal protein S19 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002222	Ribosomal protein S19/S15	PRINTS	PR00975	RIBOSOMALS19	coord: 31..50 score: 48.95 coord: 51..63 score: 40.82 coord: 63..78 score: 55.04
IPR002222	Ribosomal protein S19/S15	PIRSF	PIRSF002144	RPS19p_RPS19a_RPS15e_RPS19o	coord: 1..94 e-value: 1.1E-28 score: 97.2
IPR002222	Ribosomal protein S19/S15	PFAM	PF00203	Ribosomal_S19	coord: 4..79 e-value: 1.0E-25 score: 89.4
IPR002222	Ribosomal protein S19/S15	PANTHER	PTHR11880	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	coord: 2..93
IPR002222	Ribosomal protein S19/S15	HAMAP	MF_00531	Ribosomal_S19	coord: 2..90 score: 19.465796
IPR005732	Ribosomal protein S19, bacterial-type	TIGRFAM	TIGR01050	TIGR01050	coord: 3..86 e-value: 9.5E-29 score: 97.5
IPR023575	Ribosomal protein S19/S15, superfamily	GENE3D	3.30.860.10	30s Ribosomal Protein S19; Chain A	coord: 1..90 e-value: 2.5E-27 score: 96.6
IPR023575	Ribosomal protein S19/S15, superfamily	SUPERFAMILY	54570	Ribosomal protein S19	coord: 4..80
None	No IPR available	PANTHER	PTHR11880:SF36	40S RIBOSOMAL PROTEIN S19, MITOCHONDRIAL	coord: 2..93
IPR020934	Ribosomal protein S19 conserved site	PROSITE	PS00323	RIBOSOMAL_S19	coord: 51..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0078881.1	Cmc03g0078881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome