Cmc03g0078721 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0078721
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr03: 25268759 .. 25270129 (+)
RNA-Seq Expression	Cmc03g0078721
Synteny	Cmc03g0078721

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTCCATTTTTGGATAAGACCCTAGAAATCTCTTTCTCCAATCACGTTCAAAAGATTCAAGCTTTTCAGTTCTAGGGACGTAAGTTTTTATTCCAATAACTCCTTGCATTGACTCAAAAGTTGAAGGCTTTATGGACTCCAACATGTTTGTAACACCATCCGTTATTATCCAAACATACCCTTTTTTCATCATTCCGATTTGTTTTGCTTTGGTGAAAATACGAGAGGCAAGGTCAGATAACATGTGTACCACAAACACTCGTGTCTGCATTGTCATTAATTTGTAAAGTTCGCTAGTGAGATGGTCGTCGGTTACATCCGGGGAAATGATGCTTTGATAAGGTACGTGAGCATTGACTTCTTGGAGCGCGTCGATGAGGTAAGGGATGATGCCATCGCCGAACTCGTTGTCGACATAGATTGGGACGACTTTTCGCCATTTGAAGGTTTTGACGATGGCTCCGATGGCTTTAACTTGAGAGGAATCGTCTTGGGCAACTCGAAAAAAGAAAGAGCTGCGGTGAGAAGTGAGAGAAGGTCGTGTGGCTGAAAATGAGATTATGGGAACTTGTGCTTTGTCTCCAATGTCGATCATGAAGTTGGCTTGCATTGAGCTTGTTGGACCTAAAATGGCTTGTACTTCCTCTTTCTTTATCAATTCTAGAGCTGTTCAATTGTGTCCATTTATGGAAATATAATGGTAAGATGTAAGTTTGTTGAGACTTGTGAGGAAGGAAAGAGGAGAGAAACTTTATCGTTGATGATTATTTCTTAATTTGATTTGAGGATATCTAGTTCTAGCTATGATCAGTTCCCTTATTTGTCATACTAAATAGAGTCTTGAAAACTTACTCAAAGAATCATCTTTTGAAAAACTGACTAAGAATTCGAATGTTTTTAATTAAGAAATATGAAGTCTTTAATAGTAAGAAAAATGGGAAGAAACAAGAAACATTTTAAAACAACTAAGAACCACAACTTGAGTAAACCATACCCAAAAGGAGTAATTTTTTAAAGTTTCATTCTTTTTCTAAAATTTGACTATGAATTCAAGCTTTTCAAAAAGAGAAAAACTCGGATGCAGTTCAGCTTCCAATAAGCATACCCATGTAACAATTTTTTTATGAAGAGAAGCCTAATTTCTAAAAAGAAACGCTATGGATTGAACTTTAAACTTTGGGTTTTGGGAAAAAAAAACATTACAAGCTTAGTTTCAGTTAGAATTTACTAAATTCAATTTAGTGTCCCACCCATTTTAAAAGATTCAAGTAGTCTCTAATATCAACTAAATGCTAATTTTGACTAAAATTGAAAAAAGAACCTGCAGCAGCTGCATCAACAACGGTACCATTGGAGTCCATGGGCTTA

mRNA sequence

CTTCTTCCATTTTTGGATAAGACCCTAGAAATCTCTTTCTCCAATCACGTTCAAAAGATTCAAGCTTTTCAGTTCTAGGGACGTAAGTTTTTATTCCAATAACTCCTTGCATTGACTCAAAAGTTGAAGGCTTTATGGACTCCAACATGTTTGTAACACCATCCGTTATTATCCAAACATACCCTTTTTTCATCATTCCGATTTGTTTTGCTTTGGTGAAAATACGAGAGGCAAGGTCAGATAACATGTGTACCACAAACACTCGTGTCTGCATTGTCATTAATTTGTAAAGTTCGCTAGTGAGATGGTCGTCGGTTACATCCGGGGAAATGATGCTTTGATAAGGTACGTGAGCATTGACTTCTTGGAGCGCGTCGATGAGGTAAGGGATGATGCCATCGCCGAACTCGTTGTCGACATAGATTGGGACGACTTTTCGCCATTTGAAGGTTTTGACGATGGCTCCGATGGCTTTAACTTGAGAGGAATCGTCTTGGGCAACTCGAAAAAAGAAAGAGCTGCGGTGAGAAGTGAGAGAAGGTCGTGTGGCTGAAAATGAGATTATGGGAACTTGTGCTTTGTCTCCAATGTCGATCATGAAGTTGGCTTGCATTGAGCTTGTTGGACCTAAAATGGCTTGTACTTCCTCTTTCTTTATCAATTCTAGAGCTGTTCAATTGTGTCCATTTATGGAAATATAATGGTAAGATGTAAGTTTGTTGAGACTTGTGAGGAAGGAAAGAGGAGAGAAACTTTATCGTTGATGATTATTTCTTAATTTGATTTGAGGATATCTAGTTCTAGCTATGATCAGTTCCCTTATTTGTCATACTAAATAGAGTCTTGAAAACTTACTCAAAGAATCATCTTTTGAAAAACTGACTAAGAATTCGAATGTTTTTAATTAAGAAATATGAAGTCTTTAATAGTAAGAAAAATGGGAAGAAACAAGAAACATTTTAAAACAACTAAGAACCACAACTTGAGTAAACCATACCCAAAAGGAGTAATTTTTTAAAGTTTCATTCTTTTTCTAAAATTTGACTATGAATTCAAGCTTTTCAAAAAGAGAAAAACTCGGATGCAGTTCAGCTTCCAATAAGCATACCCATGTAACAATTTTTTTATGAAGAGAAGCCTAATTTCTAAAAAGAAACGCTATGGATTGAACTTTAAACTTTGGGTTTTGGGAAAAAAAAACATTACAAGCTTAGTTTCAGTTAGAATTTACTAAATTCAATTTAGTGTCCCACCCATTTTAAAAGATTCAAGTAGTCTCTAATATCAACTAAATGCTAATTTTGACTAAAATTGAAAAAAGAACCTGCAGCAGCTGCATCAACAACGGTACCATTGGAGTCCATGGGCTTA

Coding sequence (CDS)

ATGGTCGTCGGTTACATCCGGGGAAATGATGCTTTGATAAGGTACGTGAGCATTGACTTCTTGGAGCGCGTCGATGAGGTAAGGGATGATGCCATCGCCGAACTCGTTGTCGACATAGATTGGGACGACTTTTCGCCATTTGAAGGTTTTGACGATGGCTCCGATGGCTTTAACTTGAGAGGAATCGTCTTGGGCAACTCGAAAAAAGAAAGAGCTGCGGTGAGAAGTGAGAGAAGGTCGTGTGGCTGA

Protein sequence

MVVGYIRGNDALIRYVSIDFLERVDEVRDDAIAELVVDIDWDDFSPFEGFDDGSDGFNLRGIVLGNSKKERAAVRSERRSCG

Homology

[Close]

BLAST of Cmc03g0078721 vs. NCBI nr
Match: PON61615.1 (hypothetical protein TorRG33x02_281070 [Trema orientale])

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-08
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 1   MVVGYIRGNDALIRYVSIDFLERVDEVRDDAIAELVVDIDWDDFSPFEGFDDGSDGFNLR 60
           +VVG  RG+D  +R  +ID L+ V +VR+D +A LVVD+D   F+P EG DDG++G +LR
Sbjct: 75  LVVGGGRGDDTPVRDSAIDALQSVGQVRNDPLAVLVVDVDGHRFAPSEGLDDGANGAHLR 134

Query: 61  GIVLGNSKKERAAVRSE 78
            +V G+S++  A+ R E
Sbjct: 135 RVVCGHSEEVGASERGE 151

[Close]

BLAST of Cmc03g0078721 vs. ExPASy TrEMBL
Match: A0A2P5CKX4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_281070 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 1   MVVGYIRGNDALIRYVSIDFLERVDEVRDDAIAELVVDIDWDDFSPFEGFDDGSDGFNLR 60
           +VVG  RG+D  +R  +ID L+ V +VR+D +A LVVD+D   F+P EG DDG++G +LR
Sbjct: 75  LVVGGGRGDDTPVRDSAIDALQSVGQVRNDPLAVLVVDVDGHRFAPSEGLDDGANGAHLR 134

Query: 61  GIVLGNSKKERAAVRSE 78
            +V G+S++  A+ R E
Sbjct: 135 RVVCGHSEEVGASERGE 151

The following BLAST results are available for this feature:

BLAST of Cmc03g0078721 vs. NCBI nr


Match Name	E-value	Identity	Description
PON61615.1	3.8e-08	46.75	hypothetical protein TorRG33x02_281070 [Trema orientale]	[more]

BLAST of Cmc03g0078721 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc03g0078721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5CKX4	1.9e-08	46.75	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_281070 PE=4 SV...	[more]

BLAST of Cmc03g0078721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0078721.1	Cmc03g0078721.1	mRNA