Cmc03g0078091 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0078091
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptioneIF5
LocationCMiso1.1chr03: 24878970 .. 24880902 (+)
RNA-Seq ExpressionCmc03g0078091
SyntenyCmc03g0078091
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTTCGATAAAGACTCAAAAGCAGGTCTCTAAAGAGGTGACACGCTACTAGTTGAAGAAACAACAAACACAATACCATTGTTCAAAGACGAGGTTCATATAACCCAAACACACCGAAAGCGAACACAGAGACATGAGCACAACACAATGGAACAAACGATAATCCCTTATTCCAGAAATGCTAAACAAAAAGCTATGACAGTAAAATTAAAAGCCCTGACGCACAGGCAGTGGATACCATAACAAAAAGGAGTGCAGTAATATTATTCTTACTCTTCTTCCGTCTCCGACTCGGCATTTTGGAGCCATTCGATGAAAGGCTTTACGTATTTCCAGATTTGAGAGCTTTTGTTTGCACCAGCCACACCCTGCTTGTACCACTCTAGTACGAATTCCTCCTCTATTACATCGCCATCATATAATGATTTCAGGACAAGGGCAACCTCCTTACCCGCCTCTGGACTTGTGTTGATACAAAAAGATTCGATGGAGCGTAGAAGAGTTATCTGTGATCCTTCCTCAGCAGCGACTACAGCAAGGAACTTCTTCTTTTTCACTACTTCCTTAGAGAAGCCTTTGCCAACACCATCAAATAGAGCCTCGACCAAGGCGTTCACAATCTCTTGGCGAGTTCCAGAGAGGGATTCCAAGAACGATTTGAGATCGGTTGTGGAGGAACCTTTCTTCAAATGATCTTTGATTTCTTGAATGAGGGAAACATGTGTAGAAACTCCATTTCCATTCTTGTTACCATTGGCTGCAGACTTCTCATGCTCAGATGACTTCTTTGACGACTTGTTCTCTTCAGTAGTCGAGAGCATGACCATATCAGCAGTGACAGCACTCAACTGCTCCTGAATACGCTGCTTGGCCGCCTCTAAAGAAGTATCTGTTTGCCACTGCACATCGTCATCATCTTCGTCATCGGCTGCTTGGTCATTATCACCGGCATGGCTACGAGTTGGAGAATGATCTTCATCTGAGCCATTATTCTTTTTCTTGCTTGGAACTTTGGTTACAGCATCCTTTGTAGTAGTGCTTTTCTTTTTCAGAACATCCTTTTTTATTTTCTTCTGCTCCTCATCGGCAGCCTCTCCCTCCTTAAGCCGTTCCTTCTCAGCCCTCCTCATCGCTTTCTTGTCTTTTGATCCCTTCTTCTGTTCAGGTGGGTTCTTGAGAATAAATGTTGTGAGTTTATCTCTCATGTCGACATCAGATATGAATCCACAGGCAGCACATTTCATAGTGATCATCTGCGTCTTCGTGATGATTATCTCAGTCTCAGGGTTGCCACATCCATAGCATTGAACATATTTCTTGATGAAGTTTTCAAGAAGACCAGCCAGCTTTGCAGTCTCATGTGCACCATTTACAAGAGAAGTTCCAGTTTTCTCATCGAACTTGGATTGTGCACCAAGTTCGCATCCAAAGTACTTGGTAGTGTAGGAGGCAGGTCTGCCCAAGGCCTTTGCAATTTCCACCATGTTAACTACATTAGTCTTGATGCCATTACCTCTACCTTCAATTTTAGTAACCATCTTAGGCATTTTATACCTATAGAAGGCATCATCGCGGTTCGAGGCACCAATATTCTGCAACGCCATGTTGTTAAAATACAGAAATACTGCAAGTTCTAGTTAGAAAAGATAGGTAGAAGTAGCAGTATCTTCAAAAAGTCCTGATGCTCTTTGAGCAGCTGGGAAAGACCGCATAAAATGGAAACCAAGACCACGTGCTTTTCTATGAACTCCTAGCAACTCAAGATGCATGCAGCCAATAGTCTCAGCACAACTGATCTTTTTCCTAGACGTAGGACAATACTCTCCAAGCAATCCAATCGATGACAAAAAGAGAGAGGCCCGTTCAGACATAAAAGGAGTTTCAAACGTAACGCCCTCCACTTTGAACTACAGAACAGCAGACCGAATGGCCA

mRNA sequence

TTGTTCGATAAAGACTCAAAAGCAGGTCTCTAAAGAGGTGACACGCTACTAGTTGAAGAAACAACAAACACAATACCATTGTTCAAAGACGAGGTTCATATAACCCAAACACACCGAAAGCGAACACAGAGACATGAGCACAACACAATGGAACAAACGATAATCCCTTATTCCAGAAATGCTAAACAAAAAGCTATGACAGTAAAATTAAAAGCCCTGACGCACAGGCAGTGGATACCATAACAAAAAGGAGTGCAGTAATATTATTCTTACTCTTCTTCCGTCTCCGACTCGGCATTTTGGAGCCATTCGATGAAAGGCTTTACGTATTTCCAGATTTGAGAGCTTTTGTTTGCACCAGCCACACCCTGCTTGTACCACTCTAGTACGAATTCCTCCTCTATTACATCGCCATCATATAATGATTTCAGGACAAGGGCAACCTCCTTACCCGCCTCTGGACTTGTGTTGATACAAAAAGATTCGATGGAGCGTAGAAGAGTTATCTGTGATCCTTCCTCAGCAGCGACTACAGCAAGGAACTTCTTCTTTTTCACTACTTCCTTAGAGAAGCCTTTGCCAACACCATCAAATAGAGCCTCGACCAAGGCGTTCACAATCTCTTGGCGAGTTCCAGAGAGGGATTCCAAGAACGATTTGAGATCGGTTGTGGAGGAACCTTTCTTCAAATGATCTTTGATTTCTTGAATGAGGGAAACATGTGTAGAAACTCCATTTCCATTCTTGTTACCATTGGCTGCAGACTTCTCATGCTCAGATGACTTCTTTGACGACTTGTTCTCTTCAGTAGTCGAGAGCATGACCATATCAGCAGTGACAGCACTCAACTGCTCCTGAATACGCTGCTTGGCCGCCTCTAAAGAAGTATCTGTTTGCCACTGCACATCGTCATCATCTTCGTCATCGGCTGCTTGGTCATTATCACCGGCATGGCTACGAGTTGGAGAATGATCTTCATCTGAGCCATTATTCTTTTTCTTGCTTGGAACTTTGGTTACAGCATCCTTTGTAGTAGTGCTTTTCTTTTTCAGAACATCCTTTTTTATTTTCTTCTGCTCCTCATCGGCAGCCTCTCCCTCCTTAAGCCGTTCCTTCTCAGCCCTCCTCATCGCTTTCTTGTCTTTTGATCCCTTCTTCTGTTCAGGTGGGTTCTTGAGAATAAATGTTGTGAGTTTATCTCTCATGTCGACATCAGATATGAATCCACAGGCAGCACATTTCATAGTGATCATCTGCGTCTTCGTGATGATTATCTCAGTCTCAGGGTTGCCACATCCATAGCATTGAACATATTTCTTGATGAAGTTTTCAAGAAGACCAGCCAGCTTTGCAGTCTCATGTGCACCATTTACAAGAGAAGTTCCAGTTTTCTCATCGAACTTGGATTGTGCACCAAGTTCGCATCCAAAGTACTTGGTAGTGTAGGAGGCAGGTCTGCCCAAGGCCTTTGCAATTTCCACCATGTTAACTACATTAGTCTTGATGCCATTACCTCTACCTTCAATTTTAGTAACCATCTTAGGCATTTTATACCTATAGAAGGCATCATCGCGGTTCGAGGCACCAATATTCTGCAACGCCATGTTGTTAAAATACAGAAATACTGCAAGTTCTAGTTAGAAAAGATAGGTAGAAGTAGCAGTATCTTCAAAAAGTCCTGATGCTCTTTGAGCAGCTGGGAAAGACCGCATAAAATGGAAACCAAGACCACGTGCTTTTCTATGAACTCCTAGCAACTCAAGATGCATGCAGCCAATAGTCTCAGCACAACTGATCTTTTTCCTAGACGTAGGACAATACTCTCCAAGCAATCCAATCGATGACAAAAAGAGAGAGGCCCGTTCAGACATAAAAGGAGTTTCAAACGTAACGCCCTCCACTTTGAACTACAGAACAGCAGACCGAATGGCCA

Coding sequence (CDS)

ATGTGCACCATTTACAAGAGAAGTTCCAGTTTTCTCATCGAACTTGGATTGTGCACCAAGTTCGCATCCAAAGTACTTGGTAGTGTAGGAGGCAGGTCTGCCCAAGGCCTTTGCAATTTCCACCATGTTAACTACATTAGTCTTGATGCCATTACCTCTACCTTCAATTTTAGTAACCATCTTAGGCATTTTATACCTATAGAAGGCATCATCGCGGTTCGAGGCACCAATATTCTGCAACGCCATGTTGTTAAAATACAGAAATACTGCAAGTTCTAG

Protein sequence

MCTIYKRSSSFLIELGLCTKFASKVLGSVGGRSAQGLCNFHHVNYISLDAITSTFNFSNHLRHFIPIEGIIAVRGTNILQRHVVKIQKYCKF
Homology
[Close]
BLAST of Cmc03g0078091 vs. ExPASy TrEMBL
Match: A0A7C9ADE4 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 0 

Query: 1  MCTIYKRSSSFLIELGLCTKFASKVLGSVGGRSAQGLCNFHHVNYISLDAITSTFNFSNH 60
          MC+I+K   SFLI+ GL +KF +K+  SVG R +QG CN +H++ +SL AI+ TFN  +H
Sbjct: 16 MCSIHKGCPSFLIKFGLSSKFTAKIFRSVGCRPSQGFCNVNHIDNVSLYAISPTFNLCDH 75

Query: 61 LRHFIPIEGIIAVRGTNILQRHVV 85
          L H I +EGIIAV  TN+LQ H+V
Sbjct: 76 LWHLITVEGIIAVSSTNVLQCHLV 99

[Close]
BLAST of Cmc03g0078091 vs. ExPASy TrEMBL
Match: A0A0A9IZ48 (eIF5 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.6e-08
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 0 

Query: 1  MCTIYKRSSSFLIELGLCTKFASKVLGSVGGRSAQGLCNFHHVNYISLDAITSTFNFSNH 60
          M  I +RSS FLI+  LC +F SKVL  V     +  CN +H++ I LDAIT+ F F  H
Sbjct: 1  MSPIDQRSSCFLIKFRLCPQFTSKVLRCVRSWPGKRFCNVNHIHNIGLDAITTPFYFGYH 60

Query: 61 LRHFIPIEGIIAV 74
            H +P+EGII V
Sbjct: 61 PGHLVPVEGIIPV 73

The following BLAST results are available for this feature:
BLAST of Cmc03g0078091 vs.
Match NameE-valueIdentityDescription
BLAST of Cmc03g0078091 vs.
Match NameE-valueIdentityDescription
BLAST of Cmc03g0078091 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7C9ADE42.1e-1653.57Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A0A9IZ483.6e-0847.95eIF5 OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of Cmc03g0078091 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0078091.1Cmc03g0078091.1mRNA