Cmc03g0075861 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0075861
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	U4/U6 small nuclear ribonucleoprotein PRP4-like protein
Location	CMiso1.1chr03: 23153009 .. 23156941 (-)
RNA-Seq Expression	Cmc03g0075861
Synteny	Cmc03g0075861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTTGCACGAATTGCCTTCCACCCGTCGGGCAAGTACTTGGGCACAACTAGCTTTGACAAGACCTGGAGATTATGGGATGTTGAAACTGGTGTAGAATTACTTCTTCAAGATCAAGTAGAAGTGTCTATGGGATAGCCTTCCACCATGATGGATCCTTGGTATCATCTTGTGTCCTTGATGCACTTGCTTGCGTTTGGGATCTTCGAACTGGTAGAAGTGTTCTTGCCTTGGAAGGCCACGTCAAGCCAGTAAGCTCTCTCCTTTCTTTTGATGGGATTGTAGAACATTTGCTTTTTTAATAAATTGGCTTGTTTGCTTCCTACTGATGCCTTGTTTTTCAATGGATGTCATATGTCTATGATGTTATAACCAGGTCCTTGGAGTTAGTTTTTCACCCAACGGTTATCATTTAGCTACTGGTGGAGAAGATAACACTTGTCGGATATGGGATTTAAGGAAGAAAAAATTTCTTTGCATAATACCTGCGCATTCAAACCTAGTTTCACAGGTGAAATATGAACCTCAGGAGGGATATTTCTTGGTTACTGCATCATTTGATATGATAGCAAAGGTAATCTTGAATACCGCCAGAATGATATAATATTGTTCAAGTCTTAATATTTTCATTTGATTGTTGCTTAATCTCACTTGTTGTCTAAGGTTCAATTATCATATGCTCAATTCTTCTTTTCTTCCTTTCGCAGATTTGGTCTGCTCGAGATGTTAAGCCTGTGAAGTCACTCTCTGGTCACGAAGCAAAAGTTACATCGTTGGATATAATTTCAGGTTAGTTATGTAACAATTCTTAGGTCATTACTATTATTGCGTTGTTTACACAGATTACCACCTAGGTTATTGTGTACACCAATTTTGCATCCTTCTATGGTTTTTTCCACGCATGTCCTGCATTTAGCCTGGACTTGGGTTGATAGATATCAATAACAACTTGCCGGGGGGGGGGGGGGGGGGGGGATTGACAATCATGCAAGAGATTATAGCTTATGCTTTTGCTACCATGGAGCTGGTTCTTGTTGCTCTGTTATAAGGAATGGATAGCATAGACGTTACTCGTTAGTTGCATACATGTTTTCTTTAAAGACTGAATGACAGTAGTAAAAACGAATGGATGTGCTTGAAATCATTTCTGACTGAAAGAATGATAACCCACCTGTTGGGTTTGAGGATGTATGCCCCTGCAGTCTACAAGATAGTCTGTGGCTCAGATTGAAAGATTGTAAGATCCCAACTCTTTGCTCTTGGAAGGTCATATCATATCACTGAAATCTTCCCTCCAGAACCTTCTTCATCTGTCCCCCATGAGAATGGCCTCCCCCTCCCCTGGAAATGGAAAACAAAACCTGGTCCCAAAATTTCTGAAAACCTGTCAGGTTCCAATTTTTCCAAAAACTAGTCATTAGTTTTAATTTGCTTTGAGGTTGTTCCTGCCTGTTCCCGGTGGTTTTGGATATTGAGTAGGTGTGTACAGGTTGGGTTGGTCTGGTTCGTTTAGAGTTTTCTTTTTGGACCATCTCGATCAATCCTATTCATTCTGACGCAACCCTACTCGTAAATTATTGTGTTAGGTTATCATGTTGGCCTTTTATCAAAAACAAATTTAACAACTTCATTTCGTATTACAACATTTGAAGAAACTCAAAATAAGATCATTACGATGCTAAAGATTCGTAATTTTCACCAGTAATTAGCCTTATTTAGGCACAATCTCAGATTGAACTAATTTTTCGAGGTGGAACCATATTATGTCAAAGATGAGCTGGAATTTGGGATCCTATTTTATAAGCTCTAGCGGTGAAAATGGACAGCTTTTTCTTGGTCTAAAATTAAGTGCTCTTTCAAACATTATAGGTTATTGATTTTAGTTACTAGTTTGCAATCTCTTCTTTGATCACCTTTAGATTCTTGAAATGTCATCTTTATTTCATTTTGAAATATTCCTTTTACCCAAAAAAAAAAAAAGAGGTTCCGGACCTTTGGTGGCAGACGATGGCCATGTTAGCTCCAGTGAGAGAGAGCAAACGAGTGAGAGAGAAAGGGGACTAACCAATTAGTGGTACAACCAGTAGGGAAGGGGGAACTAAAACCGACTAGTGAGGGAGAGAAAAGGGGAAGAAGCACCTTTTGGTTCTATTGGGAGAAGCGTTGAGTTCGAGTGAGAGGGAGATGAACAAAATGGTTGTCGACTGAAGTCTCTTTCTCTGCAATTTATGAAAGAGAGAAAAAAGGAAAGAAAGAATGACTTGAAGTCTTTAACCTTCAAAAAATTGTGTGCGTGTCTATATATATAGATAGATCATAGATAGAAAGATAGGTATATGAGATTAATTCAGTTCAGGTTGAATCAAAGATCTTTTCAAGTATGCCCAATTCTTTTGTTTATTTTTGTGATCTTGTACAATTCACAGCGGAGTAACCAACCCAAGTTCTAATTACTCCACTTCTTTCCTCAACATAGATTGGAAGGTTTATATTGAAAGAAATGAAAGAATATACGAGGGAATTAAAAAAAAAAAACGTGCAACAGAAATAGGGAATCAGCCAACTACGTGGACACCAGTCCAAATGAACAAGACCTAGGTCATAAATATGAAAAGATCTACTGATTGACGCCCACACAAGACCTAGGTCATAAGTACAAAAAGAACTACTCATTGACGCCCACAAAGACATGTTAAACCGTTCAAGAGATTTCATTGTAGCTTAGCTCTTTCTTCCGTTGTTTGGTGGCCTCTTCTTTGGCTACCTGTTGGGTGTTCTCAATTCAGAAGGTTAAAAATTCTAAAAAAGGTAAATTTTTTTTTTGTGGCGAATTCTTAAAAGTAGTGCCAGTATGGTTGGACTATACCGTGGGAGAGGGGATCTAGAACACCTTTAGGGTGGTGTTCCTATGGTTTCGAACAAATTCTTTTTCCTGGATGATGGATGTTTAGTTCGATCCAAGGTTGTTAAATGATCTTTTGGGCAACTGAAAAGTATTTCAGTAATCTCTGTAATACGGTGTTGGTTTTTTTTTCCAATTTTCACCCTTACTGTAATATTTCATCCCATTATTGTTTATGTGAAATTTCAAGTAAGACCAACTCAACCAGAATATGGTTAAGGATTTAGGAAATCATTAAAGGATACTGAACTGTTTTTGTGACAAGTAGAACGTTGGAAGGTGTTTGAATGTAATTTGCTTGCCTTAAGGACGCAACCATAAAAGATAGTAGCCGTTTTTCTTTGGTTTTAATGTGAATAGTTACTGATACATCTTTAACACTAAGCTCTAAGTAAGTTTATGCATTGTATGCTCAAAATACTTTTTGGAGCTTCATTCTGCATATGTGCTTCTGATATCCTGATATTGTTCTTGTTCAGTGTATTGCAACCGTCTCACATGGTCATAAAGCTCTGGTCTGTTAATAGTAAAGACAAACAGACTATGGACATTGATTGACTTTTCATAGTACCAACATGGGGAATGACAGGTTCTGTTCTATAAATTGTACGTCTATGTCCTTGAGTTCTAAAGAGACATGAGAGATGTTTTGAAACTTTGCGGCCTGAGGTGATAAAGAGCTTGGATCAGACGATCTCCCTTTCTAATTATGTATCATCATGTATCTGATTGAATTTTGAATAGTGAGTTATTTGAAAACTTTTAACTTTTGTTTTTTTCTAGAAAAGAAAAGGAAGGATTATATCAGTGGAGGACATAGAAAAAAAGGGAGATGAGATATTTCCCGCATGTTTGAGATTAAAAATGCACCAAAATTAGAGGTAAGAATGGATATGTAAATGACATGTAGTTTTCTTTAGATTTCCTTTTGGTTAGAAATGGTTTGTGGCACCGATTACCATAGTGATTAAGGATGTCAAAATTATTTGGTTAAAATACAATTTTAATGGACTCTAACCACATCTATAAATT

mRNA sequence

GCCTTGCACGAATTGCCTTCCACCCGTCGGGCAAGTACTTGGGCACAACTAGCTTTGACAAGACCTGGAGATTATGGGATGTTGAAACTGGTGTAGAATTACTTCTTCAAGATCAAGTAGAAGTGTCTATGGGATAGCCTTCCACCATGATGGATCCTTGGTATCATCTTGTGTCCTTGATGCACTTGCTTGCGTTTGGGATCTTCGAACTGGTAGAAGTGTTCTTGCCTTGGAAGGCCACGTCAAGCCATTTTTCACCCAACGGTTATCATTTAGCTACTGGTGGAGAAGATAACACTTGTCGGATATGGGATTTAAGGAAGAAAAAATTTCTTTGCATAATACCTGCGCATTCAAACCTAGTTTCACAGGTGAAATATGAACCTCAGGAGGGATATTTCTTGGTTACTGCATCATTTGATATGATAGCAAAGATTTGGTCTGCTCGAGATGTTAAGCCTGTGAAGTCACTCTCTGGTCACGAAGCAAAAGTTACATCGTTGGATATAATTTCAGTGTATTGCAACCGTCTCACATGGTCATAAAGCTCTGGTCTGTTAATAGTAAAGACAAACAGACTATGGACATTGATTGACTTTTCATAGTACCAACATGGGGAATGACAGGTTCTGTTCTATAAATTGTACGTCTATGTCCTTGAGTTCTAAAGAGACATGAGAGATGTTTTGAAACTTTGCGGCCTGAGGTGATAAAGAGCTTGGATCAGACGATCTCCCTTTCTAATTATGTATCATCATGTATCTGATTGAATTTTGAATAGTGAGTTATTTGAAAACTTTTAACTTTTGTTTTTTTCTAGAAAAGAAAAGGAAGGATTATATCAGTGGAGGACATAGAAAAAAAGGGAGATGAGATATTTCCCGCATGTTTGAGATTAAAAATGCACCAAAATTAGAGGTAAGAATGGATATGTAAATGACATGTAGTTTTCTTTAGATTTCCTTTTGGTTAGAAATGGTTTGTGGCACCGATTACCATAGTGATTAAGGATGTCAAAATTATTTGGTTAAAATACAATTTTAATGGACTCTAACCACATCTATAAATT

Coding sequence (CDS)

ATGATGGATCCTTGGTATCATCTTGTGTCCTTGATGCACTTGCTTGCGTTTGGGATCTTCGAACTGGTAGAAGTGTTCTTGCCTTGGAAGGCCACGTCAAGCCATTTTTCACCCAACGGTTATCATTTAGCTACTGGTGGAGAAGATAACACTTGTCGGATATGGGATTTAAGGAAGAAAAAATTTCTTTGCATAATACCTGCGCATTCAAACCTAGTTTCACAGGTGAAATATGAACCTCAGGAGGGATATTTCTTGGTTACTGCATCATTTGATATGATAGCAAAGATTTGGTCTGCTCGAGATGTTAAGCCTGTGAAGTCACTCTCTGGTCACGAAGCAAAAGTTACATCGTTGGATATAATTTCAGTGTATTGCAACCGTCTCACATGGTCATAA

Protein sequence

MMDPWYHLVSLMHLLAFGIFELVEVFLPWKATSSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLDIISVYCNRLTWS

Homology

[Close]

BLAST of Cmc03g0075861 vs. NCBI nr
Match: KAA0036444.1 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo var. makuwa] >TYK00042.1 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.3 bits (477), Expect = 4.1e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 36  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA 95
           FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA
Sbjct: 159 FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA 218

Query: 96  KIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           KIWSARDVKPVKSLSGHEAKVTSLDIIS
Sbjct: 219 KIWSARDVKPVKSLSGHEAKVTSLDIIS 246

[Close]

BLAST of Cmc03g0075861 vs. NCBI nr
Match: XP_004146749.1 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis sativus] >XP_031742738.1 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis sativus] >KGN47802.1 hypothetical protein Csa_003570 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-40
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 36  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA 95
           FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM A
Sbjct: 452 FSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLVSQVKYEPQEGYFLVTASFDMTA 511

Query: 96  KIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           KIWSARD KPVK+LSGHEAKVTSLDIIS
Sbjct: 512 KIWSARDFKPVKTLSGHEAKVTSLDIIS 539

[Close]

BLAST of Cmc03g0075861 vs. NCBI nr
Match: XP_038885479.1 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Benincasa hispida] >XP_038885480.1 U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Benincasa hispida])

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-40
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 36  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA 95
           FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM A
Sbjct: 452 FSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLVSQVKYEPQEGYFLVTASFDMTA 511

Query: 96  KIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           KIWSARD KPVK+LSGHEAKVTSLDIIS
Sbjct: 512 KIWSARDFKPVKTLSGHEAKVTSLDIIS 539

[Close]

BLAST of Cmc03g0075861 vs. NCBI nr
Match: XP_008464716.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo] >XP_016903247.1 PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo] >XP_016903248.1 PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo] >XP_016903249.1 PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-40
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 36  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA 95
           FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM A
Sbjct: 452 FSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLVSQVKYEPQEGYFLVTASFDMTA 511

Query: 96  KIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           KIWSARD KPVK+LSGHEAKVTSLDIIS
Sbjct: 512 KIWSARDFKPVKTLSGHEAKVTSLDIIS 539

[Close]

BLAST of Cmc03g0075861 vs. NCBI nr
Match: XP_022999661.1 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucurbita maxima])

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-40
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 35  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMI 94
           +FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNL+SQVKYEPQEGYFLVTASFDM 
Sbjct: 452 NFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQVKYEPQEGYFLVTASFDMT 511

Query: 95  AKIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           AKIWSARD KPVK+LSGHEAKVTSLDIIS
Sbjct: 512 AKIWSARDFKPVKTLSGHEAKVTSLDIIS 540

[Close]

BLAST of Cmc03g0075861 vs. ExPASy Swiss-Prot
Match: O22212 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana OX=3702 GN=LIS PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.2e-35
Identity = 68/89 (76.40%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 33  SSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFD 92
           S +FSPNGYHLA+GGEDN CRIWDLR +K L IIPAH+NLVSQVKYEPQEGYFL TAS+D
Sbjct: 428 SVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYD 487

Query: 93  MIAKIWSARDVKPVKSLSGHEAKVTSLDI 122
           M   IWS RD   VKSL+GHE+KV SLDI
Sbjct: 488 MKVNIWSGRDFSLVKSLAGHESKVASLDI 516

[Close]

BLAST of Cmc03g0075861 vs. ExPASy Swiss-Prot
Match: Q3MHE2 (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus OX=9913 GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-25
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 35  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMI 94
           +FSPNGYH+ATG  DNTC++WDLR+++ +  IPAH NLV+ VK+EP  G FL+T ++D  
Sbjct: 413 NFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNT 472

Query: 95  AKIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           AKIW+     P+K+L+GHE KV  LDI S
Sbjct: 473 AKIWTHPGWSPLKTLAGHEGKVMGLDISS 501

[Close]

BLAST of Cmc03g0075861 vs. ExPASy Swiss-Prot
Match: O43172 (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens OX=9606 GN=PRPF4 PE=1 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-25
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 35  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMI 94
           +FSPNGYH+ATG  DNTC++WDLR+++ +  IPAH NLV+ VK+EP  G FL+T ++D  
Sbjct: 414 NFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNT 473

Query: 95  AKIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           AKIW+     P+K+L+GHE KV  LDI S
Sbjct: 474 AKIWTHPGWSPLKTLAGHEGKVMGLDISS 502

[Close]

BLAST of Cmc03g0075861 vs. ExPASy Swiss-Prot
Match: Q5NVD0 (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii OX=9601 GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-25
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 35  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMI 94
           +FSPNGYH+ATG  DNTC++WDLR+++ +  IPAH NLV+ VK+EP  G FL+T ++D  
Sbjct: 413 NFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNT 472

Query: 95  AKIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           AKIW+     P+K+L+GHE KV  LDI S
Sbjct: 473 AKIWTHPGWSPLKTLAGHEGKVMGLDISS 501

[Close]

BLAST of Cmc03g0075861 vs. ExPASy Swiss-Prot
Match: Q9DAW6 (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus OX=10090 GN=Prpf4 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-25
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 35  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMI 94
           +FSPNGYH+ATG  DNTC++WDLR+++ +  IPAH NLV+ VK+EP  G FL+T ++D  
Sbjct: 413 NFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNT 472

Query: 95  AKIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           AKIW+     P+K+L+GHE KV  LDI S
Sbjct: 473 AKIWTHPGWSPLKTLAGHEGKVMGLDISS 501

[Close]

BLAST of Cmc03g0075861 vs. ExPASy TrEMBL
Match: A0A5A7SYS7 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00880 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.0e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 36  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA 95
           FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA
Sbjct: 159 FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA 218

Query: 96  KIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           KIWSARDVKPVKSLSGHEAKVTSLDIIS
Sbjct: 219 KIWSARDVKPVKSLSGHEAKVTSLDIIS 246

[Close]

BLAST of Cmc03g0075861 vs. ExPASy TrEMBL
Match: A0A1S4E4U8 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucumis melo OX=3656 GN=LOC103502534 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.0e-40
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 36  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA 95
           FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM A
Sbjct: 452 FSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLVSQVKYEPQEGYFLVTASFDMTA 511

Query: 96  KIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           KIWSARD KPVK+LSGHEAKVTSLDIIS
Sbjct: 512 KIWSARDFKPVKTLSGHEAKVTSLDIIS 539

[Close]

BLAST of Cmc03g0075861 vs. ExPASy TrEMBL
Match: A0A5A7TI50 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00300 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.0e-40
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 36  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA 95
           FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM A
Sbjct: 443 FSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLVSQVKYEPQEGYFLVTASFDMTA 502

Query: 96  KIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           KIWSARD KPVK+LSGHEAKVTSLDIIS
Sbjct: 503 KIWSARDFKPVKTLSGHEAKVTSLDIIS 530

[Close]

BLAST of Cmc03g0075861 vs. ExPASy TrEMBL
Match: A0A6J1KDQ7 (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493950 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.0e-40
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 35  HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMI 94
           +FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNL+SQVKYEPQEGYFLVTASFDM 
Sbjct: 452 NFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQVKYEPQEGYFLVTASFDMT 511

Query: 95  AKIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           AKIWSARD KPVK+LSGHEAKVTSLDIIS
Sbjct: 512 AKIWSARDFKPVKTLSGHEAKVTSLDIIS 540

[Close]

BLAST of Cmc03g0075861 vs. ExPASy TrEMBL
Match: A0A0A0KHD8 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G404170 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.0e-40
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 36  FSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFDMIA 95
           FSPNGYHLATGGEDNTCRIWDLRKKK L IIPAHSNLVSQVKYEPQEGYFLVTASFDM A
Sbjct: 452 FSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLVSQVKYEPQEGYFLVTASFDMTA 511

Query: 96  KIWSARDVKPVKSLSGHEAKVTSLDIIS 124
           KIWSARD KPVK+LSGHEAKVTSLDIIS
Sbjct: 512 KIWSARDFKPVKTLSGHEAKVTSLDIIS 539

[Close]

BLAST of Cmc03g0075861 vs. TAIR 10
Match: AT2G41500.1 (WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related )

HSP 1 Score: 148.3 bits (373), Expect = 4.4e-36
Identity = 68/89 (76.40%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 33  SSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFD 92
           S +FSPNGYHLA+GGEDN CRIWDLR +K L IIPAH+NLVSQVKYEPQEGYFL TAS+D
Sbjct: 428 SVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYD 487

Query: 93  MIAKIWSARDVKPVKSLSGHEAKVTSLDI 122
           M   IWS RD   VKSL+GHE+KV SLDI
Sbjct: 488 MKVNIWSGRDFSLVKSLAGHESKVASLDI 516

[Close]

BLAST of Cmc03g0075861 vs. TAIR 10
Match: AT2G05720.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 141.4 bits (355), Expect = 5.4e-34
Identity = 67/89 (75.28%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 33  SSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVTASFD 92
           S  FSPNGYHLA+GGEDN CRIWDLR +K L IIPAH NLVSQVKYEPQE YFL TAS D
Sbjct: 177 SVDFSPNGYHLASGGEDNQCRIWDLRMRKLLYIIPAHVNLVSQVKYEPQERYFLATASHD 236

Query: 93  MIAKIWSARDVKPVKSLSGHEAKVTSLDI 122
           M   IWS RD   VKSL GHE+KV SLDI
Sbjct: 237 MNVNIWSGRDFSLVKSLVGHESKVASLDI 265

[Close]

BLAST of Cmc03g0075861 vs. TAIR 10
Match: AT5G13480.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 29  WKATSSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVT 88
           W   S  + P    L +GG+D   ++WD R  + LC +  H N+V  VK+  Q G +L+T
Sbjct: 250 WDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWN-QNGNWLLT 309

Query: 89  ASFDMIAKIWSARDVKPVKSLSGHEAKVTSL 120
           AS D I K++  R +K ++S  GH   VTSL
Sbjct: 310 ASKDQIIKLYDIRTMKELQSFRGHTKDVTSL 339

[Close]

BLAST of Cmc03g0075861 vs. TAIR 10
Match: AT5G13480.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-13
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 29  WKATSSHFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKYEPQEGYFLVT 88
           W   S  + P    L +GG+D   ++WD R  + LC +  H N+V  VK+  Q G +L+T
Sbjct: 256 WDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWN-QNGNWLLT 315

Query: 89  ASFDMIAKIWSARDVKPVKSLSGHEAKVTSL 120
           AS D I K++  R +K ++S  GH   VTSL
Sbjct: 316 ASKDQIIKLYDIRTMKELQSFRGHTKDVTSL 345

[Close]

BLAST of Cmc03g0075861 vs. TAIR 10
Match: AT1G61210.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-10
Identity = 31/102 (30.39%), Postives = 51/102 (50.00%), Query Frame = 0


Query: 21  ELVEVFLPWKATSS--HFSPNGYHLATGGEDNTCRIWDLRKKKFLCIIPAHSNLVSQVKY 80
           ++V  F   ++  S   F P G  LA+G  D   +IWD+RKK  +     HS  +S +++
Sbjct: 91  KMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRF 150

Query: 81  EPQEGYFLVTASFDMIAKIWSARDVKPVKSLSGHEAKVTSLD 121
            P +G ++V+   D + K+W     K +     HE  + SLD
Sbjct: 151 TP-DGRWVVSGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLD 191

The following BLAST results are available for this feature:

BLAST of Cmc03g0075861 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036444.1	4.1e-44	100.00	U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo var. makuw...	[more]
XP_004146749.1	2.1e-40	94.32	U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis sativus] >XP_03...	[more]
XP_038885479.1	2.1e-40	94.32	U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Benincasa hispida] >XP_...	[more]
XP_008464716.1	2.1e-40	94.32	PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucumis melo...	[more]
XP_022999661.1	2.1e-40	92.13	U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Cucurbita maxima]	[more]

BLAST of Cmc03g0075861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22212	6.2e-35	76.40	U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana ...	[more]
Q3MHE2	1.2e-25	56.18	U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus OX=9913 GN=PRPF4 PE=2 S...	[more]
O43172	1.2e-25	56.18	U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens OX=9606 GN=PRPF4 PE=1...	[more]
Q5NVD0	1.2e-25	56.18	U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii OX=9601 GN=PRPF4 PE=2...	[more]
Q9DAW6	1.5e-25	56.18	U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus OX=10090 GN=Prpf4 PE=...	[more]

BLAST of Cmc03g0075861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYS7	2.0e-44	100.00	U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucumis melo var. mak...	[more]
A0A1S4E4U8	1.0e-40	94.32	U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucumis melo OX=3656 ...	[more]
A0A5A7TI50	1.0e-40	94.32	U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucumis melo var. mak...	[more]
A0A6J1KDQ7	1.0e-40	92.13	U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Cucurbita maxima OX=3...	[more]
A0A0A0KHD8	1.0e-40	94.32	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G...	[more]

BLAST of Cmc03g0075861 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41500.1	4.4e-36	76.40	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related	[more]
AT2G05720.1	5.4e-34	75.28	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G13480.1	1.4e-13	38.46	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G13480.2	1.4e-13	38.46	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G61210.1	1.9e-10	30.39	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 59..99 e-value: 0.0022 score: 27.2 coord: 19..56 e-value: 0.0031 score: 26.8
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 35..56 e-value: 1.9E-5 score: 25.3
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 36..65 score: 11.143396
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 66..108 score: 11.109979
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 28..129 e-value: 4.2E-23 score: 84.1
None	No IPR available	PANTHER	PTHR19846	WD40 REPEAT PROTEIN	coord: 33..123
None	No IPR available	PANTHER	PTHR19846:SF3	BNAC04G01920D PROTEIN	coord: 33..123
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 66..99 score: 8.57106
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 43..57
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 35..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0075861.1	Cmc03g0075861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0030621	U4 snRNA binding
molecular_function	GO:0017070	U6 snRNA binding