Cmc03g0075831 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0075831
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	transcription factor PRE6-like
Location	CMiso1.1chr03: 23134829 .. 23136228 (+)
RNA-Seq Expression	Cmc03g0075831
Synteny	Cmc03g0075831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTCCTTTAATTTCTCTCAGCTCCCTAAAAACTTCTCTTATTGCCTTCATCACAACAATTTTTTTCATCATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCTCAGCTTCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGTAAATTTAAAACATGAGCATACTTCAACTAGCATAAAAGAATATATTTGTTAATCATCTTTAATTTGGTTTTTGTTTATAATCTTCTTCTTTGTGTTTCCAAAAGGGTTATTAAATATTGTCTCCCCACATGTCGGGTTGTGGGTCTCATATTGTTCCCTCCTTCCACTGCCAATGCATCTGGGATACTCCAAATTCCCCCCTCCACACACCATCCCATTATTTCAATTCATTATTCTTCTTCATATATACCCTTTCCTACTATTTCAATCACTCCCTCATATATATTTTAATGATATCCGTTCCCATATAGATTTCAAAATCTATCCACTTCTGATAATAATAAATGAAAAAACTTACTAAGATAATAGTTTGAATGATGGATAAATCTCTCACGAGCTACATTCTGGCAGTCTCTCAATATAATGATCTCTTTCTTACAAAGGTTTTCTACTTTTTATTTCTAGTACTGTACTCTGTCACATAAATGACTTAAAAAAAAAATACTTTTGTGCATCTTGACTTGCACAAGATCACATTAAAACTCTCTAGAACTAAAGTGTACTTAAACGAGAGAGCGTAATATTAAGTTGAGTGATGTGTGGTTTTAGAAAAAGAAAAATTAAATGCGACTAAAATATTAGTTTGGAAAATTAATTATAGCTTTCACCTGTTGTAAAAAATCTTGTAACGATATATTTAATTTTACGAGTGTAGGTGTCGGCTTCAAGAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGTGAGCGATTGTCACAACTTTTGGCAGCAACTGAAAACGACAGCGCCGAGGCTGCCATTATTAGGAGTTTATTTCTGTAAAGAACCCATTTAAATAACCACAGTTTCCCTACCCATAAATTAATTACTACGACGTCGTTAATTTCCCTTTTTCATTCTCCTCTCTTATTATTTATATATAATATAACATTATATTATATAATATAATATAATATAATATAATATAATATAATATGTGTATGATATTTAAATTATTATTTAGGTAGGGCTTTTTTGGCCAATGTATTAGGCCACTACACAGGAGGGTGTGTTATATTTTATGCATAATATAACACCTCTTTTGAGCAGAGAGTTTGTAGTACCTTTGACTTTATATAATATTATTATTCTATGAACTCAAAA

mRNA sequence

GTTGTCCTTTAATTTCTCTCAGCTCCCTAAAAACTTCTCTTATTGCCTTCATCACAACAATTTTTTTCATCATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCTCAGCTTCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGTGTCGGCTTCAAGAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGTGAGCGATTGTCACAACTTTTGGCAGCAACTGAAAACGACAGCGCCGAGGCTGCCATTATTAGGAGTTTATTTCTGTAAAGAACCCATTTAAATAACCACAGTTTCCCTACCCATAAATTAATTACTACGACGTCGTTAATTTCCCTTTTTCATTCTCCTCTCTTATTATTTATATATAATATAACATTATATTATATAATATAATATAATATAATATAATATAATATAATATGTGTATGATATTTAAATTATTATTTAGGTAGGGCTTTTTTGGCCAATGTATTAGGCCACTACACAGGAGGGTGTGTTATATTTTATGCATAATATAACACCTCTTTTGAGCAGAGAGTTTGTAGTACCTTTGACTTTATATAATATTATTATTCTATGAACTCAAAA

Coding sequence (CDS)

ATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCTCAGCTTCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGTGTCGGCTTCAAGAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGTGAGCGATTGTCACAACTTTTGGCAGCAACTGAAAACGACAGCGCCGAGGCTGCCATTATTAGGAGTTTATTTCTGTAA

Protein sequence

MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL

Homology

[Close]

BLAST of Cmc03g0075831 vs. NCBI nr
Match: XP_008465587.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo] >KAA0036447.1 transcription factor PRE6-like [Cucumis melo var. makuwa] >TYK00039.1 transcription factor PRE6-like [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 5.8e-40
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]

BLAST of Cmc03g0075831 vs. NCBI nr
Match: XP_004146747.1 (transcription factor PRE6 [Cucumis sativus] >KGN47805.1 hypothetical protein Csa_003742 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 4.2e-38
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]

BLAST of Cmc03g0075831 vs. NCBI nr
Match: XP_038886241.1 (transcription factor PRE6-like [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-36
Identity = 89/96 (92.71%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSRNSS  +PLISDDQI+DLVSKLQRLIPELRNPRASHKVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSS-GAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM 95

[Close]

BLAST of Cmc03g0075831 vs. NCBI nr
Match: XP_022946595.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_022999784.1 transcription factor PRE6-like [Cucurbita maxima] >XP_022999785.1 transcription factor PRE6-like [Cucurbita maxima] >KAG6599062.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030000.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.5 bits (371), Expect = 5.8e-32
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of Cmc03g0075831 vs. NCBI nr
Match: XP_023546056.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31
Identity = 84/96 (87.50%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSRN+S +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNTSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of Cmc03g0075831 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-28
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSR S +S   ISDDQI+DLVSKLQ LIPELR  R S KVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRQSGSSR--ISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSL 95
          RNLHREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Sbjct: 61 RNLHREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]

BLAST of Cmc03g0075831 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-23
Identity = 67/94 (71.28%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MS RR SRSR SS +S  IS+DQI DL+ KLQ+L+PELR+ R S KVSA+RVLQ+TCNYI
Sbjct: 1  MSGRR-SRSRQSSGTS-RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSL 95
          RNLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Sbjct: 61 RNLHREVDDLSERLSELLA--NSDTAQAALIRSL 90

[Close]

BLAST of Cmc03g0075831 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.8e-23
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MS+RRS      S+S+P ISD+Q+ DLVSKL++++PE+   R S K SAS+VLQETCNYI
Sbjct: 1  MSNRRS----RQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNL+REVD+LSERLSQLL + + DS EAA+IRSL +
Sbjct: 61 RNLNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Cmc03g0075831 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.8e-23
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MS+RRS ++ N+S     ISDDQ+ DLVSKL++ +PE+   R S KVSAS+VLQETCNYI
Sbjct: 1  MSNRRSRQTSNASR----ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          R LHREVD+LS+RLSQLL + + DS EAA+IRSL +
Sbjct: 61 RKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Cmc03g0075831 vs. ExPASy Swiss-Prot
Match: F4JCN9 (Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-22
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 3  SRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRN 62
          S R SRSR + AS  +I+D+QI DLV +L RL+PEL N R S KVSASRVLQETC+YIRN
Sbjct: 2  SSRKSRSRQTGAS--MITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRN 61

Query: 63 LHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          L +EVDDLSERLSQLL +T  DSA+AA+IRSL +
Sbjct: 62 LSKEVDDLSERLSQLLEST--DSAQAALIRSLLM 91

[Close]

BLAST of Cmc03g0075831 vs. ExPASy TrEMBL
Match: A0A5D3BPI2 (Transcription factor PRE6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00850 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.8e-40
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]

BLAST of Cmc03g0075831 vs. ExPASy TrEMBL
Match: A0A1S3CPL2 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103503223 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.8e-40
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]

BLAST of Cmc03g0075831 vs. ExPASy TrEMBL
Match: A0A0A0KDL6 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G404200 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.0e-38
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]

BLAST of Cmc03g0075831 vs. ExPASy TrEMBL
Match: A0A6J1KGK3 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111494030 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.8e-32
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of Cmc03g0075831 vs. ExPASy TrEMBL
Match: A0A6J1G4C0 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450613 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.8e-32
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSRNSS +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]

BLAST of Cmc03g0075831 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-29
Identity = 75/94 (79.79%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MSSRRSSRSR S +S   ISDDQI+DLVSKLQ LIPELR  R S KVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRQSGSSR--ISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSL 95
          RNLHREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Sbjct: 61 RNLHREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]

BLAST of Cmc03g0075831 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 110.5 bits (275), Expect = 7.4e-25
Identity = 67/94 (71.28%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MS RR SRSR SS +S  IS+DQI DL+ KLQ+L+PELR+ R S KVSA+RVLQ+TCNYI
Sbjct: 1  MSGRR-SRSRQSSGTS-RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSL 95
          RNLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Sbjct: 61 RNLHREVDDLSERLSELLA--NSDTAQAALIRSL 90

[Close]

BLAST of Cmc03g0075831 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 107.5 bits (267), Expect = 6.2e-24
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MS+RRS ++ N+S     ISDDQ+ DLVSKL++ +PE+   R S KVSAS+VLQETCNYI
Sbjct: 1  MSNRRSRQTSNASR----ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          R LHREVD+LS+RLSQLL + + DS EAA+IRSL +
Sbjct: 61 RKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Cmc03g0075831 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 107.5 bits (267), Expect = 6.2e-24
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60
          MS+RRS      S+S+P ISD+Q+ DLVSKL++++PE+   R S K SAS+VLQETCNYI
Sbjct: 1  MSNRRS----RQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          RNL+REVD+LSERLSQLL + + DS EAA+IRSL +
Sbjct: 61 RNLNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Cmc03g0075831 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-23
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 3  SRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYIRN 62
          S R SRSR + AS  +I+D+QI DLV +L RL+PEL N R S KVSASRVLQETC+YIRN
Sbjct: 2  SSRKSRSRQTGAS--MITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRN 61

Query: 63 LHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 97
          L +EVDDLSERLSQLL +T  DSA+AA+IRSL +
Sbjct: 62 LSKEVDDLSERLSQLLEST--DSAQAALIRSLLM 91

The following BLAST results are available for this feature:

BLAST of Cmc03g0075831 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465587.1	5.8e-40	100.00	PREDICTED: transcription factor PRE6-like [Cucumis melo] >KAA0036447.1 transcrip...	[more]
XP_004146747.1	4.2e-38	94.79	transcription factor PRE6 [Cucumis sativus] >KGN47805.1 hypothetical protein Csa...	[more]
XP_038886241.1	5.1e-36	92.71	transcription factor PRE6-like [Benincasa hispida]	[more]
XP_022946595.1	5.8e-32	88.54	transcription factor PRE6-like [Cucurbita moschata] >XP_022999784.1 transcriptio...	[more]
XP_023546056.1	1.3e-31	87.50	transcription factor PRE6-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cmc03g0075831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	1.8e-28	79.79	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9CA64	1.0e-23	71.28	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
Q9FLE9	8.8e-23	62.50	Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1	[more]
Q9LJX1	8.8e-23	62.50	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
F4JCN9	3.3e-22	68.09	Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1	[more]

BLAST of Cmc03g0075831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPI2	2.8e-40	100.00	Transcription factor PRE6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CPL2	2.8e-40	100.00	transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103503223 PE=4 SV=1	[more]
A0A0A0KDL6	2.0e-38	94.79	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G404200 PE=4 S...	[more]
A0A6J1KGK3	2.8e-32	88.54	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111494030 PE=4 ...	[more]
A0A6J1G4C0	2.8e-32	88.54	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450613 PE=...	[more]

BLAST of Cmc03g0075831 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	1.3e-29	79.79	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G74500.1	7.4e-25	71.28	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT3G28857.1	6.2e-24	62.50	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	6.2e-24	62.50	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT3G47710.1	2.4e-23	68.09	BANQUO 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..80
None	No IPR available	PANTHER	PTHR46446:SF29	BNAA09G29410D PROTEIN	coord: 1..95
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 19..79 e-value: 1.09077E-19 score: 73.4915
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 21..92 e-value: 7.4E-9 score: 37.7
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 22..80
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 22..64 e-value: 4.1E-5 score: 23.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 8..63 score: 9.743476
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0075831.1	Cmc03g0075831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity