Cmc03g0075751 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0075751
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Tf2-9 polyprotein
Location	CMiso1.1chr03: 23082990 .. 23083604 (+)
RNA-Seq Expression	Cmc03g0075751
Synteny	Cmc03g0075751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAATATTTTTAATGATTCGGTGGTGGGAGGACATTCTGGTTTTCTAAGAACATATAAACGAGTGGCAAGTGAGTTGTACTGGGAGGGAATGAAGTTTGACATGAAGAAACGTTGTGAAGCATGTTTGATTTGTCAGCATAATAAGAGTTTGGCTCTATCACCGGCTGGGTTGTTAGTACCACAGGAAATTCTCCATCAAGTTTGGAGTGATATTTCTATGGATTTCATTAATGGGCTACCTAAGGCGAAGGGTTGTGATGTGATACTAGTCGTAGTAGACCGATTCAGCGAGTATAGTCATTCCCTAGCCTTAAAGCATCCTTATACAACCAAGTCAGTGGCGGATATCTTTGTGAAAGAAATAGTTAAACTGCATGGTTCTCCTTCCTCCATTGTTTATGACAAAGACAAGGTGTTTCTCAGCCATTTTTTGAATGAGTCGTTCAGGTTGGCAGGTACTAAGCTCCGTAAAAGCACGGCGTATCATCCACAGTCCGATGGACAAACGAAAGTAGTAAATAGAGGTTTGGAAACTTATCTTAGGTGTTTCTGTAATGAACGCCCAAGGGAATGGATTTTGTGGCTGCCGTGGGCCGAGTTTTTGGTATAA

mRNA sequence

ATGTTGAATATTTTTAATGATTCGGTGGTGGGAGGACATTCTGGTTTTCTAAGAACATATAAACGAGTGGCAAGTGAGTTGTACTGGGAGGGAATGAAGTTTGACATGAAGAAACGTTGTGAAGCATGTTTGATTTGTCAGCATAATAAGAGTTTGGCTCTATCACCGGCTGGGTTGTTAGTACCACAGGAAATTCTCCATCAAGTTTGGAGTGATATTTCTATGGATTTCATTAATGGGCTACCTAAGGCGAAGGGTTGTGATGTGATACTAGTCGTAGTAGACCGATTCAGCGAGTATAGTCATTCCCTAGCCTTAAAGCATCCTTATACAACCAAGTCAGTGGCGGATATCTTTGTGAAAGAAATAGTTAAACTGCATGGTTCTCCTTCCTCCATTGTTTATGACAAAGACAAGGTGTTTCTCAGCCATTTTTTGAATGAGTCGTTCAGGTTGGCAGGTACTAAGCTCCGTAAAAGCACGGCGTATCATCCACAGTCCGATGGACAAACGAAAGTAGTAAATAGAGGTTTGGAAACTTATCTTAGGTGTTTCTGTAATGAACGCCCAAGGGAATGGATTTTGTGGCTGCCGTGGGCCGAGTTTTTGGTATAA

Coding sequence (CDS)

ATGTTGAATATTTTTAATGATTCGGTGGTGGGAGGACATTCTGGTTTTCTAAGAACATATAAACGAGTGGCAAGTGAGTTGTACTGGGAGGGAATGAAGTTTGACATGAAGAAACGTTGTGAAGCATGTTTGATTTGTCAGCATAATAAGAGTTTGGCTCTATCACCGGCTGGGTTGTTAGTACCACAGGAAATTCTCCATCAAGTTTGGAGTGATATTTCTATGGATTTCATTAATGGGCTACCTAAGGCGAAGGGTTGTGATGTGATACTAGTCGTAGTAGACCGATTCAGCGAGTATAGTCATTCCCTAGCCTTAAAGCATCCTTATACAACCAAGTCAGTGGCGGATATCTTTGTGAAAGAAATAGTTAAACTGCATGGTTCTCCTTCCTCCATTGTTTATGACAAAGACAAGGTGTTTCTCAGCCATTTTTTGAATGAGTCGTTCAGGTTGGCAGGTACTAAGCTCCGTAAAAGCACGGCGTATCATCCACAGTCCGATGGACAAACGAAAGTAGTAAATAGAGGTTTGGAAACTTATCTTAGGTGTTTCTGTAATGAACGCCCAAGGGAATGGATTTTGTGGCTGCCGTGGGCCGAGTTTTTGGTATAA

Protein sequence

MLNIFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLLVPQEILHQVWSDISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFVKEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLETYLRCFCNERPREWILWLPWAEFLV

Homology

[Close]

BLAST of Cmc03g0075751 vs. NCBI nr
Match: KAA0042014.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK17950.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 362.8 bits (930), Expect = 1.9e-96
Identity = 167/202 (82.67%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1   MLNIFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLL 60
           MLN F+DSVVGGHSGFLRTYKR+ASELYWEGMK D+KK CE+C+ CQ NKSLALSPA LL
Sbjct: 194 MLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVKKHCESCITCQRNKSLALSPARLL 253

Query: 61  VPQEILHQVWSDISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFV 120
           +P EI HQVWSDISMDFI+GLPKAKGCDVILVVVD+ S+YSH LALKHPYT KS A+IFV
Sbjct: 254 IPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDQLSKYSHFLALKHPYTAKSAAEIFV 313

Query: 121 KEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLET 180
           KEIV+LHG PSSIV D+DKVFLSHF NE F++AGTKLRKSTAYHPQ+DGQT++VNRGLET
Sbjct: 314 KEIVRLHGFPSSIVSDRDKVFLSHFWNEMFKMAGTKLRKSTAYHPQTDGQTEMVNRGLET 373

Query: 181 YLRCFCNERPREWILWLPWAEF 203
           YLRCFC ERPREWILWLPWAE+
Sbjct: 374 YLRCFCRERPREWILWLPWAEY 395

[Close]

BLAST of Cmc03g0075751 vs. NCBI nr
Match: KAA0047643.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 354.8 bits (909), Expect = 5.1e-94
Identity = 162/202 (80.20%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1   MLNIFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLL 60
           +LN F+DSVVGGHSGFLRTYKR+ASELYWEGMK D+KK CEAC+ CQ NKSLALSPAGLL
Sbjct: 383 ILNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVKKHCEACVTCQRNKSLALSPAGLL 442

Query: 61  VPQEILHQVWSDISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFV 120
           VP +I HQ+WSDISMDFI+GLPKAKG DVILVVVDR S+YSH L LKHPYT K+VA+ FV
Sbjct: 443 VPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRLSKYSHFLTLKHPYTAKTVAESFV 502

Query: 121 KEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLET 180
           KEIV+LHG P+SIV D+DKVFLSHF NE F++AGTKL+KSTAYHPQ+DGQT+VVNRGLET
Sbjct: 503 KEIVRLHGFPTSIVSDRDKVFLSHFWNELFKMAGTKLKKSTAYHPQTDGQTEVVNRGLET 562

Query: 181 YLRCFCNERPREWILWLPWAEF 203
           YLRCFC+ERP+EWI+WLPWAE+
Sbjct: 563 YLRCFCSERPKEWIMWLPWAEY 584

[Close]

BLAST of Cmc03g0075751 vs. NCBI nr
Match: KAA0056477.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK29050.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 354.0 bits (907), Expect = 8.7e-94
Identity = 165/202 (81.68%), Postives = 184/202 (91.09%), Query Frame = 0


Query: 1   MLNIFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLL 60
           MLN F+DSVVGGHS FLRTYKR+ASELYWEGMK D+KK C++ + CQ NKSL LSPAGLL
Sbjct: 204 MLNTFHDSVVGGHSEFLRTYKRLASELYWEGMKSDVKKHCDSYITCQRNKSLVLSPAGLL 263

Query: 61  VPQEILHQVWSDISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFV 120
           +P EI HQVWSDISMDFI+GLPKAKGCDVILVVVDR ++YSH LALKHPYT KSVA+IFV
Sbjct: 264 IPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRLNKYSHFLALKHPYTAKSVANIFV 323

Query: 121 KEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLET 180
           KEIV+LHG PSSIV D+DK+FLSHF NE F++AGTKLRKSTAYHPQSDGQT+VVNRGLET
Sbjct: 324 KEIVRLHGFPSSIVSDQDKIFLSHFWNELFKIAGTKLRKSTAYHPQSDGQTEVVNRGLET 383

Query: 181 YLRCFCNERPREWILWLPWAEF 203
           YLRCFC+ERPRE ILWLPWAE+
Sbjct: 384 YLRCFCSERPRELILWLPWAEY 405

[Close]

BLAST of Cmc03g0075751 vs. NCBI nr
Match: TYK23779.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 353.6 bits (906), Expect = 1.1e-93
Identity = 161/202 (79.70%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1    MLNIFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLL 60
            ++N F+DSVVGGHSGFLRTYKR+ASELYWEGMK D+KK CEAC+ CQ NKSLALSP GLL
Sbjct: 1031 IMNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVKKHCEACVTCQRNKSLALSPVGLL 1090

Query: 61   VPQEILHQVWSDISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFV 120
            +P +I HQ+WSDISMDFI+GLPKAKG DVILVVVDR S+YSH LALKHPYT K+VA+ FV
Sbjct: 1091 MPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRLSKYSHFLALKHPYTAKTVAESFV 1150

Query: 121  KEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLET 180
            KEIV+LHG P+SIV D+DKVFLSHF NE F++AGTKL+KSTAYHPQ+DGQT+VVNRGLET
Sbjct: 1151 KEIVRLHGFPTSIVSDRDKVFLSHFWNELFKMAGTKLKKSTAYHPQTDGQTEVVNRGLET 1210

Query: 181  YLRCFCNERPREWILWLPWAEF 203
            YLRCFC+ERP+EWILWLPWAE+
Sbjct: 1211 YLRCFCSERPKEWILWLPWAEY 1232

[Close]

BLAST of Cmc03g0075751 vs. NCBI nr
Match: XP_016902037.1 (PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Cucumis melo])

HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93
Identity = 162/204 (79.41%), Postives = 186/204 (91.18%), Query Frame = 0


Query: 1   MLNIFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLL 60
           MLN F+DSVVGGHSGFLRTYKR+ASELYW+GMK ++KK CE+C+ CQ NKSLALSPAGLL
Sbjct: 553 MLNTFHDSVVGGHSGFLRTYKRLASELYWKGMKSNVKKHCESCITCQRNKSLALSPAGLL 612

Query: 61  VPQEILHQVWSDISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFV 120
           +P EI HQVWSDISMDFI+GLPK KGC+VILVVVDR S+YSH LALKH YT KSVA+IFV
Sbjct: 613 IPLEIPHQVWSDISMDFIDGLPKTKGCNVILVVVDRLSKYSHFLALKHSYTAKSVAEIFV 672

Query: 121 KEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLET 180
           KEIV+LHG P+SI  D+DKVFLSHF NE F++AGTKL+KSTAYHPQ++GQT+VVNRGL+T
Sbjct: 673 KEIVRLHGFPTSIFSDRDKVFLSHFWNELFKMAGTKLKKSTAYHPQTNGQTEVVNRGLKT 732

Query: 181 YLRCFCNERPREWILWLPWAEFLV 205
           YLRCFC+ERP+EWILWLPWAE LV
Sbjct: 733 YLRCFCSERPKEWILWLPWAELLV 756

[Close]

BLAST of Cmc03g0075751 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 3.6e-26
Identity = 66/205 (32.20%), Postives = 107/205 (52.20%), Query Frame = 0


Query: 1    MLNIFND-SVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGL 60
            ++ +++D ++ GGH G   T  +++   YW  ++  + +    C+ CQ  KS      GL
Sbjct: 1099 VMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGL 1158

Query: 61   LVPQEILHQVWSDISMDFINGL-PKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADI 120
            L P  I    W DISMDF+ GL P +   ++ILVVVDRFS+ +H +A +       + D+
Sbjct: 1159 LQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDL 1218

Query: 121  FVKEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGL 180
              + I   HG P +I  D+D    +    E  +  G K   S+A HPQ+DGQ++   + L
Sbjct: 1219 LFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTL 1278

Query: 181  ETYLRCFCNERPREWILWLPWAEFL 204
               LR + +   + W ++LP  EF+
Sbjct: 1279 NRLLRAYASTNIQNWHVYLPQIEFV 1303

[Close]

BLAST of Cmc03g0075751 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-26
Identity = 66/205 (32.20%), Postives = 107/205 (52.20%), Query Frame = 0


Query: 1    MLNIFND-SVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGL 60
            ++ +++D ++ GGH G   T  +++   YW  ++  + +    C+ CQ  KS      GL
Sbjct: 1125 VMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGL 1184

Query: 61   LVPQEILHQVWSDISMDFINGL-PKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADI 120
            L P  I    W DISMDF+ GL P +   ++ILVVVDRFS+ +H +A +       + D+
Sbjct: 1185 LQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDL 1244

Query: 121  FVKEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGL 180
              + I   HG P +I  D+D    +    E  +  G K   S+A HPQ+DGQ++   + L
Sbjct: 1245 LFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTL 1304

Query: 181  ETYLRCFCNERPREWILWLPWAEFL 204
               LR + +   + W ++LP  EF+
Sbjct: 1305 NRLLRAYVSTNIQNWHVYLPQIEFV 1329

[Close]

BLAST of Cmc03g0075751 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.0e-25
Identity = 56/182 (30.77%), Postives = 90/182 (49.45%), Query Frame = 0


Query: 13   HSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLLVPQEILHQVWSD 72
            H G       +     W+G++  +++  + C  CQ NKS    P G L P     + W  
Sbjct: 927  HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986

Query: 73   ISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFVKEIVKLHGSPSS 132
            +SMDFI  LP++ G + + VVVDRFS+ +  +      T +  A +F + ++   G+P  
Sbjct: 987  LSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKE 1046

Query: 133  IVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLETYLRCFCNERPRE 192
            I+ D D +F S    +        ++ S  Y PQ+DGQT+  N+ +E  LRC C+  P  
Sbjct: 1047 IIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNT 1106

Query: 193  WI 195
            W+
Sbjct: 1107 WV 1108

[Close]

BLAST of Cmc03g0075751 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.0e-25
Identity = 56/182 (30.77%), Postives = 90/182 (49.45%), Query Frame = 0


Query: 13   HSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLLVPQEILHQVWSD 72
            H G       +     W+G++  +++  + C  CQ NKS    P G L P     + W  
Sbjct: 927  HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986

Query: 73   ISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFVKEIVKLHGSPSS 132
            +SMDFI  LP++ G + + VVVDRFS+ +  +      T +  A +F + ++   G+P  
Sbjct: 987  LSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKE 1046

Query: 133  IVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLETYLRCFCNERPRE 192
            I+ D D +F S    +        ++ S  Y PQ+DGQT+  N+ +E  LRC C+  P  
Sbjct: 1047 IIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNT 1106

Query: 193  WI 195
            W+
Sbjct: 1107 WV 1108

[Close]

BLAST of Cmc03g0075751 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.0e-25
Identity = 56/182 (30.77%), Postives = 90/182 (49.45%), Query Frame = 0


Query: 13   HSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLLVPQEILHQVWSD 72
            H G       +     W+G++  +++  + C  CQ NKS    P G L P     + W  
Sbjct: 927  HPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWES 986

Query: 73   ISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFVKEIVKLHGSPSS 132
            +SMDFI  LP++ G + + VVVDRFS+ +  +      T +  A +F + ++   G+P  
Sbjct: 987  LSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKE 1046

Query: 133  IVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLETYLRCFCNERPRE 192
            I+ D D +F S    +        ++ S  Y PQ+DGQT+  N+ +E  LRC C+  P  
Sbjct: 1047 IIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNT 1106

Query: 193  WI 195
            W+
Sbjct: 1107 WV 1108

[Close]

BLAST of Cmc03g0075751 vs. ExPASy TrEMBL
Match: A0A5D3D2N9 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002470 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.1e-97
Identity = 167/202 (82.67%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1   MLNIFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLL 60
           MLN F+DSVVGGHSGFLRTYKR+ASELYWEGMK D+KK CE+C+ CQ NKSLALSPA LL
Sbjct: 194 MLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVKKHCESCITCQRNKSLALSPARLL 253

Query: 61  VPQEILHQVWSDISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFV 120
           +P EI HQVWSDISMDFI+GLPKAKGCDVILVVVD+ S+YSH LALKHPYT KS A+IFV
Sbjct: 254 IPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDQLSKYSHFLALKHPYTAKSAAEIFV 313

Query: 121 KEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLET 180
           KEIV+LHG PSSIV D+DKVFLSHF NE F++AGTKLRKSTAYHPQ+DGQT++VNRGLET
Sbjct: 314 KEIVRLHGFPSSIVSDRDKVFLSHFWNEMFKMAGTKLRKSTAYHPQTDGQTEMVNRGLET 373

Query: 181 YLRCFCNERPREWILWLPWAEF 203
           YLRCFC ERPREWILWLPWAE+
Sbjct: 374 YLRCFCRERPREWILWLPWAEY 395

[Close]

BLAST of Cmc03g0075751 vs. ExPASy TrEMBL
Match: A0A5A7TVR3 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G001270 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.5e-94
Identity = 162/202 (80.20%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1   MLNIFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLL 60
           +LN F+DSVVGGHSGFLRTYKR+ASELYWEGMK D+KK CEAC+ CQ NKSLALSPAGLL
Sbjct: 383 ILNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVKKHCEACVTCQRNKSLALSPAGLL 442

Query: 61  VPQEILHQVWSDISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFV 120
           VP +I HQ+WSDISMDFI+GLPKAKG DVILVVVDR S+YSH L LKHPYT K+VA+ FV
Sbjct: 443 VPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRLSKYSHFLTLKHPYTAKTVAESFV 502

Query: 121 KEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLET 180
           KEIV+LHG P+SIV D+DKVFLSHF NE F++AGTKL+KSTAYHPQ+DGQT+VVNRGLET
Sbjct: 503 KEIVRLHGFPTSIVSDRDKVFLSHFWNELFKMAGTKLKKSTAYHPQTDGQTEVVNRGLET 562

Query: 181 YLRCFCNERPREWILWLPWAEF 203
           YLRCFC+ERP+EWI+WLPWAE+
Sbjct: 563 YLRCFCSERPKEWIMWLPWAEY 584

[Close]

BLAST of Cmc03g0075751 vs. ExPASy TrEMBL
Match: A0A5D3E0L0 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001680 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.2e-94
Identity = 165/202 (81.68%), Postives = 184/202 (91.09%), Query Frame = 0


Query: 1   MLNIFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLL 60
           MLN F+DSVVGGHS FLRTYKR+ASELYWEGMK D+KK C++ + CQ NKSL LSPAGLL
Sbjct: 204 MLNTFHDSVVGGHSEFLRTYKRLASELYWEGMKSDVKKHCDSYITCQRNKSLVLSPAGLL 263

Query: 61  VPQEILHQVWSDISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFV 120
           +P EI HQVWSDISMDFI+GLPKAKGCDVILVVVDR ++YSH LALKHPYT KSVA+IFV
Sbjct: 264 IPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRLNKYSHFLALKHPYTAKSVANIFV 323

Query: 121 KEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLET 180
           KEIV+LHG PSSIV D+DK+FLSHF NE F++AGTKLRKSTAYHPQSDGQT+VVNRGLET
Sbjct: 324 KEIVRLHGFPSSIVSDQDKIFLSHFWNELFKIAGTKLRKSTAYHPQSDGQTEVVNRGLET 383

Query: 181 YLRCFCNERPREWILWLPWAEF 203
           YLRCFC+ERPRE ILWLPWAE+
Sbjct: 384 YLRCFCSERPRELILWLPWAEY 405

[Close]

BLAST of Cmc03g0075751 vs. ExPASy TrEMBL
Match: A0A5D3DKH5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001060 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.5e-94
Identity = 161/202 (79.70%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1    MLNIFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLL 60
            ++N F+DSVVGGHSGFLRTYKR+ASELYWEGMK D+KK CEAC+ CQ NKSLALSP GLL
Sbjct: 1031 IMNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVKKHCEACVTCQRNKSLALSPVGLL 1090

Query: 61   VPQEILHQVWSDISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFV 120
            +P +I HQ+WSDISMDFI+GLPKAKG DVILVVVDR S+YSH LALKHPYT K+VA+ FV
Sbjct: 1091 MPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRLSKYSHFLALKHPYTAKTVAESFV 1150

Query: 121  KEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLET 180
            KEIV+LHG P+SIV D+DKVFLSHF NE F++AGTKL+KSTAYHPQ+DGQT+VVNRGLET
Sbjct: 1151 KEIVRLHGFPTSIVSDRDKVFLSHFWNELFKMAGTKLKKSTAYHPQTDGQTEVVNRGLET 1210

Query: 181  YLRCFCNERPREWILWLPWAEF 203
            YLRCFC+ERP+EWILWLPWAE+
Sbjct: 1211 YLRCFCSERPKEWILWLPWAEY 1232

[Close]

BLAST of Cmc03g0075751 vs. ExPASy TrEMBL
Match: A0A1S4E1D6 (transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496677 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.2e-94
Identity = 162/204 (79.41%), Postives = 186/204 (91.18%), Query Frame = 0


Query: 1   MLNIFNDSVVGGHSGFLRTYKRVASELYWEGMKFDMKKRCEACLICQHNKSLALSPAGLL 60
           MLN F+DSVVGGHSGFLRTYKR+ASELYW+GMK ++KK CE+C+ CQ NKSLALSPAGLL
Sbjct: 553 MLNTFHDSVVGGHSGFLRTYKRLASELYWKGMKSNVKKHCESCITCQRNKSLALSPAGLL 612

Query: 61  VPQEILHQVWSDISMDFINGLPKAKGCDVILVVVDRFSEYSHSLALKHPYTTKSVADIFV 120
           +P EI HQVWSDISMDFI+GLPK KGC+VILVVVDR S+YSH LALKH YT KSVA+IFV
Sbjct: 613 IPLEIPHQVWSDISMDFIDGLPKTKGCNVILVVVDRLSKYSHFLALKHSYTAKSVAEIFV 672

Query: 121 KEIVKLHGSPSSIVYDKDKVFLSHFLNESFRLAGTKLRKSTAYHPQSDGQTKVVNRGLET 180
           KEIV+LHG P+SI  D+DKVFLSHF NE F++AGTKL+KSTAYHPQ++GQT+VVNRGL+T
Sbjct: 673 KEIVRLHGFPTSIFSDRDKVFLSHFWNELFKMAGTKLKKSTAYHPQTNGQTEVVNRGLKT 732

Query: 181 YLRCFCNERPREWILWLPWAEFLV 205
           YLRCFC+ERP+EWILWLPWAE LV
Sbjct: 733 YLRCFCSERPKEWILWLPWAELLV 756

The following BLAST results are available for this feature:

BLAST of Cmc03g0075751 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042014.1	1.9e-96	82.67	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK17950.1 t...	[more]
KAA0047643.1	5.1e-94	80.20	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0056477.1	8.7e-94	81.68	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK29050.1 t...	[more]
TYK23779.1	1.1e-93	79.70	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_016902037.1	1.5e-93	79.41	PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Cucumis melo]	[more]

BLAST of Cmc03g0075751 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	3.6e-26	32.20	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	4.7e-26	32.20	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	9.0e-25	30.77	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	9.0e-25	30.77	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	9.0e-25	30.77	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc03g0075751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D2N9	9.1e-97	82.67	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TVR3	2.5e-94	80.20	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3E0L0	4.2e-94	81.68	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DKH5	5.5e-94	79.70	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4E1D6	7.2e-94	79.41	transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496677 ...	[more]

BLAST of Cmc03g0075751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 5..51 e-value: 3.9E-12 score: 46.0
None	No IPR available	GENE3D	1.10.340.70		coord: 1..50 e-value: 1.3E-8 score: 36.9
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 7..202
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 60..204 e-value: 2.5E-32 score: 113.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 52..204 score: 14.490066
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 64..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0075751.1	Cmc03g0075751.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity