Cmc03g0074941 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0074941
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC5
Location	CMiso1.1chr03: 22381126 .. 22382871 (+)
RNA-Seq Expression	Cmc03g0074941
Synteny	Cmc03g0074941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGCCGCTGAGGTAGCGTCGCGCGTCGGATATCAGAAAGGGGTTTGGGCAAAACCTCTCGGAACCCTAGAAGGCGAAGTTGGAGGCATCGTCGGTCGGCGACAGAAGAGAGTGAAGATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTTAGCCATGGAGAACTATCTTCAATTTTGAGATTAAAATTGCGATTTCCTCTTCTTAATGTCGTCTGCAATATACTTTTCTTTTAGTCTCAACTCTTAATGTGATTTGGTTTATTTTTTTTCAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGGTAAGGAAGCACCACTGTCGTCGTTGTTCTTCTTCTTCTTCTTCTTCTTTTAATGATTGATTGTTAGTAAACGAAACTATACCCTTTTCCTTTGTATCAGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTCGACCTTATTGAGAAGCTTCTTAATTACAACAGTAATCCCTCTCTCTCTCTCTTCTTTCTCTTTTGTTCATTCATGCTTGAGTTGTTTGATTGTCTATGAACTGATCTTCCTCCTTTTCTCTTACATCCCGCCTTGCTACGCACCTTCTTCTCTTTCTGCATCTTATGTCTCATCTTCAAAAATGAGTTTGTTCGCTAATTGATTGATGAATGAACTTTTTTCATTTCGCTAAATCATATATTACATTTCTCAATTCAATTCAATAGATGATATCCCTGTTCGAAAGAATTTGGAATCGAATTTCACTTATTACTTATGATTGCTTTCTTCTTTTCTCGTTATAATACAATTGAGAATATCTTCGCATTCGTTCTTTGTGCTTTGCGGCCCTTTTACCCTTTAATTGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGCCAAGCGACGAGTTTTCTGATTTTTCACGTGCAGCCGTATTGGCTTTATGATGGTGTTTGTGTTCAGTTATGAGAAAAGAAAAACTACCGGAGGGCTCGAGTTAAGCTATGTCTTGGCATTCTAGTTTGTTTAATTATGGATTCATACGGACTCGAGTACTTAATCTTCTACGTGTTTATTAGTATTTAGGAGTTGTATATTAGAGCCGTGTAGCATTTTCCATAGGATGCAGTTACTCATTGATTTTAGTTCTCTGACGTTTTTGTGGTGTTTACATCCAGTTAAGAGAACAAAATTTATAGGATCATGTAGTGCAAGATTTGATTTAAGCTATATCTTGGTGTCCTGGTTGGTTTGCTTATTGATACATACGAACCCAGGTATTTAATCTTCTATGTGTTAATTAGTATTTAGGAGATATATGAGAGTTGTGTAGCATTATCCATATGCAGTCATTCTGTCAGTATTGACGTTTTTGTGGTGTTTGCATCTAGTTAAGAGAAAACAGAACTATGGGAATATTCAGTTCAGAACTTGAGTTAAGCTATATATTGGTGTCCCAATTTGTTTGCTTATTGATTGATACGAACCCAAGTATTTAATCTTGCATGTGTTAATTAGTCTTTAGGAGTACTGTAATATATCATAGCCGTGTTCTATTTTAAAGATGTAGTTACTTTAGTTATTGATTTCCATTTAGTTATTGTTTGAAATTTCGATGGTGTTTGCATCCAGATAAGAGAAAAGGAAAACTATTGCAATATGTAGTTGTAGAACTTGGTGTCCCAATTTGCATCC

mRNA sequence

TATTGCCGCTGAGGTAGCGTCGCGCGTCGGATATCAGAAAGGGGTTTGGGCAAAACCTCTCGGAACCCTAGAAGGCGAAGTTGGAGGCATCGTCGGTCGGCGACAGAAGAGAGTGAAGATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTCGACCTTATTGAGAAGCTTCTTAATTACAACACTCTGGATAAGTCTGATACCAGTTAGCCAAGCGACGAGTTTTCTGATTTTTCACGTGCAGCCGTATTGGCTTTATGATGGTGTTTGTGTTCAGTTATGAGAAAAGAAAAACTACCGGAGGGCTCGAGTTAAGCTATGTCTTGGCATTCTAGTTTGTTTAATTATGGATTCATACGGACTCGAGTACTTAATCTTCTACGTGTTTATTAGTATTTAGGAGTTGTATATTAGAGCCGTGTAGCATTTTCCATAGGATGCAGTTACTCATTGATTTTAGTTCTCTGACGTTTTTGTGGTGTTTACATCCAGTTAAGAGAACAAAATTTATAGGATCATGTAGTGCAAGATTTGATTTAAGCTATATCTTGGTGTCCTGGTTGGTTTGCTTATTGATACATACGAACCCAGGTATTTAATCTTCTATGTGTTAATTAGTATTTAGGAGATATATGAGAGTTGTGTAGCATTATCCATATGCAGTCATTCTGTCAGTATTGACGTTTTTGTGGTGTTTGCATCTAGTTAAGAGAAAACAGAACTATGGGAATATTCAGTTCAGAACTTGAGTTAAGCTATATATTGGTGTCCCAATTTGTTTGCTTATTGATTGATACGAACCCAAGTATTTAATCTTGCATGTGTTAATTAGTCTTTAGGAGTACTGTAATATATCATAGCCGTGTTCTATTTTAAAGATGTAGTTACTTTAGTTATTGATTTCCATTTAGTTATTGTTTGAAATTTCGATGGTGTTTGCATCCAGATAAGAGAAAAGGAAAACTATTGCAATATGTAGTTGTAGAACTTGGTGTCCCAATTTGCATCC

Coding sequence (CDS)

ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTCGACCTTATTGAGAAGCTTCTTAATTACAACACTCTGGATAAGTCTGATACCAGTTAG

Protein sequence

MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS

Homology

[Close]

BLAST of Cmc03g0074941 vs. NCBI nr
Match: XP_004138685.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus] >XP_008456558.1 PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo] >XP_022132211.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Momordica charantia] >XP_022951011.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita moschata] >XP_023002779.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita maxima] >XP_038884312.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >XP_038885728.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >KAG6585165.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020085.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita argyrosperma subsp. argyrosperma] >KGN63029.1 hypothetical protein Csa_022113 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 2.7e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71

[Close]

BLAST of Cmc03g0074941 vs. NCBI nr
Match: XP_022961651.1 (DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata] >XP_022997628.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita maxima] >XP_023545653.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSD S
Sbjct: 61 NYNTLDKSDPS 71

[Close]

BLAST of Cmc03g0074941 vs. NCBI nr
Match: KAG6598222.1 (DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.8 bits (382), Expect = 2.3e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSD 70
          NYNTLDKSD
Sbjct: 61 NYNTLDKSD 69

[Close]

BLAST of Cmc03g0074941 vs. NCBI nr
Match: XP_023536875.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.8 bits (382), Expect = 2.3e-33
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDRYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71

[Close]

BLAST of Cmc03g0074941 vs. NCBI nr
Match: AFK37774.1 (unknown [Lotus japonicus] >AFK45266.1 unknown [Lotus japonicus])

HSP 1 Score: 149.8 bits (377), Expect = 8.7e-33
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ+DYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDPYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71

[Close]

BLAST of Cmc03g0074941 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-33
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSD 70
          NYNT++KSD
Sbjct: 61 NYNTMEKSD 69

[Close]

BLAST of Cmc03g0074941 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-33
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTL+KSD S
Sbjct: 61 NYNTLEKSDNS 71

[Close]

BLAST of Cmc03g0074941 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-33
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTL+KSD S
Sbjct: 61 NYNTLEKSDNS 71

[Close]

BLAST of Cmc03g0074941 vs. ExPASy Swiss-Prot
Match: Q32P78 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.7e-28
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 61 NYNTLDK 68
          NY  L+K
Sbjct: 61 NYAPLEK 67

[Close]

BLAST of Cmc03g0074941 vs. ExPASy Swiss-Prot
Match: Q6QN04 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Chinchilla lanigera OX=34839 GN=POLR2L PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.7e-28
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 61 NYNTLDK 68
          NY  L+K
Sbjct: 61 NYAPLEK 67

[Close]

BLAST of Cmc03g0074941 vs. ExPASy TrEMBL
Match: A0A6J1KRF4 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucurbita maxima OX=3661 GN=LOC111496538 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71

[Close]

BLAST of Cmc03g0074941 vs. ExPASy TrEMBL
Match: A0A0A0LPW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G384980 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71

[Close]

BLAST of Cmc03g0074941 vs. ExPASy TrEMBL
Match: A0A6J1BRM3 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Momordica charantia OX=3673 GN=LOC111005126 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71

[Close]

BLAST of Cmc03g0074941 vs. ExPASy TrEMBL
Match: A0A6J1GGE0 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucurbita moschata OX=3662 GN=LOC111453986 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71

[Close]

BLAST of Cmc03g0074941 vs. ExPASy TrEMBL
Match: A0A1S3C3L9 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo OX=3656 GN=LOC103496474 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71

[Close]

BLAST of Cmc03g0074941 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-34
Identity = 63/69 (91.30%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSD 70
          NYNT++KSD
Sbjct: 61 NYNTMEKSD 69

[Close]

BLAST of Cmc03g0074941 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-34
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 72
          NYNTL+KSD S
Sbjct: 61 NYNTLEKSDNS 71

The following BLAST results are available for this feature:

BLAST of Cmc03g0074941 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138685.1	2.7e-34	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus] >XP...	[more]
XP_022961651.1	1.3e-33	98.59	DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata] >XP_022...	[more]
KAG6598222.1	2.3e-33	100.00	DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosp...	[more]
XP_023536875.1	2.3e-33	98.59	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita pepo subsp...	[more]
AFK37774.1	8.7e-33	97.18	unknown [Lotus japonicus] >AFK45266.1 unknown [Lotus japonicus]	[more]

BLAST of Cmc03g0074941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYA6	1.8e-33	91.30	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3...	[more]
Q8LFJ6	2.4e-33	91.55	DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=...	[more]
Q39290	2.4e-33	91.55	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=...	[more]
Q32P78	6.7e-28	80.60	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913...	[more]
Q6QN04	6.7e-28	80.60	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Chinchilla laniger...	[more]

BLAST of Cmc03g0074941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRF4	1.3e-34	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucurbita maxima O...	[more]
A0A0A0LPW4	1.3e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G384980 PE=3 SV=1	[more]
A0A6J1BRM3	1.3e-34	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Momordica charanti...	[more]
A0A6J1GGE0	1.3e-34	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucurbita moschata...	[more]
A0A1S3C3L9	1.3e-34	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo OX=36...	[more]

BLAST of Cmc03g0074941 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61700.1	1.3e-34	91.30	RNA polymerases N / 8 kDa subunit	[more]
AT1G11475.1	1.7e-34	91.55	RNA polymerases N / 8 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 1..69 e-value: 9.2E-41 score: 139.9
None	No IPR available	PANTHER	PTHR23431:SF6	SUBFAMILY NOT NAMED	coord: 1..71
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PIRSF	PIRSF005653	RpoN_RPB10	coord: 1..71 e-value: 3.9E-32 score: 108.0
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PFAM	PF01194	RNA_pol_N	coord: 1..59 e-value: 4.7E-32 score: 110.1
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PANTHER	PTHR23431	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	coord: 1..71
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	HAMAP	MF_00250	RNApol_arch_N	coord: 1..63 score: 19.33688
IPR020789	RNA polymerases, subunit N, zinc binding site	PROSITE	PS01112	RNA_POL_N_8KD	coord: 2..11
IPR023580	RNA polymerase subunit RPB10	SUPERFAMILY	46924	RNA polymerase subunit RPB10	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0074941.1	Cmc03g0074941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0042797	tRNA transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding