Cmc03g0074791 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0074791
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	CMiso1.1chr03: 22227267 .. 22228061 (-)
RNA-Seq Expression	Cmc03g0074791
Synteny	Cmc03g0074791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCTTGCTCAGTTCTGGTGATTTTGGTACCCAAGAAAGATGGTACATGGAGGATATGTGTTGATTGCCGAGCTATTAACAAAATAACGGTAAAGTATCGACATCCTATTCCTCGATTAGATGACATGTTAGATGAATTGCATGGTGCTAATCTGTTTTCAAAAATAGACCTTAAAAGCGGTTATCATCAAATTCGTATGCATGTAGGAGATGAATGGAAAACGGCTTTCAAAACAAAGTTTGGGCTTTATGAATCGCTTGTTATGCCGTTTGGCCTTACTAATGCACCAAGTACTTTTATGAGGCTAATAAATCATGTTTTGAAGGAATACATAGGAAAATTTGTGGTAGTATACTTTGATGATATCCTTGTTTACTCAAAAGGCTTGAATGATCATATTTTGCATGTTAAGACAATTTTACTCAAACTTAGAGAAGAAAAGCTTTATGCCAACTTCAAAAAGTGTAGTTTTTGTCAAGAACAAATACATTTCCTAGGGTTCATTGTTGGAAAGGATGGAGTGAAAGTTGATGAAGAAAAGGTAAAGGCTATCCAAGAATGGCTAACTCCTACCAATGCATCCGAGGTAAGATCCTTCCATGGTTTGGCTAGTTTCTATAGGAGATTTATTAAAGATTTTAGTAGCATAGCCTCACCATTAACTAAACTTGTGAAAAAGCATGTGAAATTTGAATGGAAAGAAAAGCAGGAAAATGCATTCAATGAGCTTAAAGAAAAATTGATCAAAGCACCTTGTCTTGCTTTACCTAACTTTGATAAATCCTTTTAG

mRNA sequence

ATGAGTCCTTGCTCAGTTCTGGTGATTTTGGTACCCAAGAAAGATGGTACATGGAGGATATGTGTTGATTGCCGAGCTATTAACAAAATAACGGTAAAGTATCGACATCCTATTCCTCGATTAGATGACATGTTAGATGAATTGCATGGTGCTAATCTGTTTTCAAAAATAGACCTTAAAAGCGGTTATCATCAAATTCGTATGCATGTAGGAGATGAATGGAAAACGGCTTTCAAAACAAAGTTTGGGCTTTATGAATCGCTTGTTATGCCGTTTGGCCTTACTAATGCACCAAGTACTTTTATGAGGCTAATAAATCATGTTTTGAAGGAATACATAGGAAAATTTGTGGTAGTATACTTTGATGATATCCTTGTTTACTCAAAAGGCTTGAATGATCATATTTTGCATGTTAAGACAATTTTACTCAAACTTAGAGAAGAAAAGCTTTATGCCAACTTCAAAAAGTGTAGTTTTTGTCAAGAACAAATACATTTCCTAGGGTTCATTGTTGGAAAGGATGGAGTGAAAGTTGATGAAGAAAAGGTAAAGGCTATCCAAGAATGGCTAACTCCTACCAATGCATCCGAGGTAAGATCCTTCCATGGTTTGGCTAGTTTCTATAGGAGATTTATTAAAGATTTTAGTAGCATAGCCTCACCATTAACTAAACTTGTGAAAAAGCATGTGAAATTTGAATGGAAAGAAAAGCAGGAAAATGCATTCAATGAGCTTAAAGAAAAATTGATCAAAGCACCTTGTCTTGCTTTACCTAACTTTGATAAATCCTTTTAG

Coding sequence (CDS)

ATGAGTCCTTGCTCAGTTCTGGTGATTTTGGTACCCAAGAAAGATGGTACATGGAGGATATGTGTTGATTGCCGAGCTATTAACAAAATAACGGTAAAGTATCGACATCCTATTCCTCGATTAGATGACATGTTAGATGAATTGCATGGTGCTAATCTGTTTTCAAAAATAGACCTTAAAAGCGGTTATCATCAAATTCGTATGCATGTAGGAGATGAATGGAAAACGGCTTTCAAAACAAAGTTTGGGCTTTATGAATCGCTTGTTATGCCGTTTGGCCTTACTAATGCACCAAGTACTTTTATGAGGCTAATAAATCATGTTTTGAAGGAATACATAGGAAAATTTGTGGTAGTATACTTTGATGATATCCTTGTTTACTCAAAAGGCTTGAATGATCATATTTTGCATGTTAAGACAATTTTACTCAAACTTAGAGAAGAAAAGCTTTATGCCAACTTCAAAAAGTGTAGTTTTTGTCAAGAACAAATACATTTCCTAGGGTTCATTGTTGGAAAGGATGGAGTGAAAGTTGATGAAGAAAAGGTAAAGGCTATCCAAGAATGGCTAACTCCTACCAATGCATCCGAGGTAAGATCCTTCCATGGTTTGGCTAGTTTCTATAGGAGATTTATTAAAGATTTTAGTAGCATAGCCTCACCATTAACTAAACTTGTGAAAAAGCATGTGAAATTTGAATGGAAAGAAAAGCAGGAAAATGCATTCAATGAGCTTAAAGAAAAATTGATCAAAGCACCTTGTCTTGCTTTACCTAACTTTGATAAATCCTTTTAG

Protein sequence

MSPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLKSGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDEEKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQENAFNELKEKLIKAPCLALPNFDKSF

Homology

[Close]

BLAST of Cmc03g0074791 vs. NCBI nr
Match: TYK22420.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 528.5 bits (1360), Expect = 3.3e-146
Identity = 256/264 (96.97%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MSPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 60
           MSPCSV VILVPKKDGTWR+CVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK
Sbjct: 507 MSPCSVPVILVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 566

Query: 61  SGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVY 120
           SGYHQIRMHVGDEWKTAFKTKFGLYE LVMPFGLTNAPSTFMRL+NHVLKEYIGKFVVVY
Sbjct: 567 SGYHQIRMHVGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLKEYIGKFVVVY 626

Query: 121 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDE 180
           FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFC EQIHFLGFIVGKDGVKVDE
Sbjct: 627 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCLEQIHFLGFIVGKDGVKVDE 686

Query: 181 EKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQEN 240
           EKVKAI+EW TPTNASEVRSFHGLASFYRRFIKDFSSIASPLT+LVKKHVKFEWKEKQEN
Sbjct: 687 EKVKAIREWPTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTELVKKHVKFEWKEKQEN 746

Query: 241 AFNELKEKLIKAPCLALPNFDKSF 265
           AFNELKEKLIKAPCLALPNFDKSF
Sbjct: 747 AFNELKEKLIKAPCLALPNFDKSF 770

[Close]

BLAST of Cmc03g0074791 vs. NCBI nr
Match: TYK26105.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 528.5 bits (1360), Expect = 3.3e-146
Identity = 256/264 (96.97%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MSPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 60
           MSPCSV VILVPKKDGTWR+CVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK
Sbjct: 608 MSPCSVPVILVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 667

Query: 61  SGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVY 120
           SGYHQIRMHVGDEWKTAFKTKFGLYE LVMPFGLTNAPSTFMRL+NHVLKEYIGKFVVVY
Sbjct: 668 SGYHQIRMHVGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLKEYIGKFVVVY 727

Query: 121 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDE 180
           FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFC EQIHFLGFIVGKDGVKVDE
Sbjct: 728 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCLEQIHFLGFIVGKDGVKVDE 787

Query: 181 EKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQEN 240
           EKVKAI+EW TPTNASEVRSFHGLASFYRRFIKDFSSIASPLT+LVKKHVKFEWKEKQEN
Sbjct: 788 EKVKAIREWPTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTELVKKHVKFEWKEKQEN 847

Query: 241 AFNELKEKLIKAPCLALPNFDKSF 265
           AFNELKEKLIKAPCLALPNFDKSF
Sbjct: 848 AFNELKEKLIKAPCLALPNFDKSF 871

[Close]

BLAST of Cmc03g0074791 vs. NCBI nr
Match: TYK02449.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 528.5 bits (1360), Expect = 3.3e-146
Identity = 256/264 (96.97%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MSPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 60
           MSPCSV VILVPKKDGTWR+CVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK
Sbjct: 608 MSPCSVPVILVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 667

Query: 61  SGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVY 120
           SGYHQIRMHVGDEWKTAFKTKFGLYE LVMPFGLTNAPSTFMRL+NHVLKEYIGKFVVVY
Sbjct: 668 SGYHQIRMHVGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLKEYIGKFVVVY 727

Query: 121 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDE 180
           FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFC EQIHFLGFIVGKDGVKVDE
Sbjct: 728 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCLEQIHFLGFIVGKDGVKVDE 787

Query: 181 EKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQEN 240
           EKVKAI+EW TPTNASEVRSFHGLASFYRRFIKDFSSIASPLT+LVKKHVKFEWKEKQEN
Sbjct: 788 EKVKAIREWPTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTELVKKHVKFEWKEKQEN 847

Query: 241 AFNELKEKLIKAPCLALPNFDKSF 265
           AFNELKEKLIKAPCLALPNFDKSF
Sbjct: 848 AFNELKEKLIKAPCLALPNFDKSF 871

[Close]

BLAST of Cmc03g0074791 vs. NCBI nr
Match: TYK11702.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 528.5 bits (1360), Expect = 3.3e-146
Identity = 256/264 (96.97%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MSPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 60
           MSPCSV VILVPKKDGTWR+CVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK
Sbjct: 608 MSPCSVPVILVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 667

Query: 61  SGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVY 120
           SGYHQIRMHVGDEWKTAFKTKFGLYE LVMPFGLTNAPSTFMRL+NHVLKEYIGKFVVVY
Sbjct: 668 SGYHQIRMHVGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLKEYIGKFVVVY 727

Query: 121 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDE 180
           FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFC EQIHFLGFIVGKDGVKVDE
Sbjct: 728 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCLEQIHFLGFIVGKDGVKVDE 787

Query: 181 EKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQEN 240
           EKVKAI+EW TPTNASEVRSFHGLASFYRRFIKDFSSIASPLT+LVKKHVKFEWKEKQEN
Sbjct: 788 EKVKAIREWPTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTELVKKHVKFEWKEKQEN 847

Query: 241 AFNELKEKLIKAPCLALPNFDKSF 265
           AFNELKEKLIKAPCLALPNFDKSF
Sbjct: 848 AFNELKEKLIKAPCLALPNFDKSF 871

[Close]

BLAST of Cmc03g0074791 vs. NCBI nr
Match: TYK04936.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 528.5 bits (1360), Expect = 3.3e-146
Identity = 256/264 (96.97%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MSPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 60
           MSPCSV VILVPKKDGTWR+CVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK
Sbjct: 608 MSPCSVPVILVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 667

Query: 61  SGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVY 120
           SGYHQIRMHVGDEWKTAFKTKFGLYE LVMPFGLTNAPSTFMRL+NHVLKEYIGKFVVVY
Sbjct: 668 SGYHQIRMHVGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLKEYIGKFVVVY 727

Query: 121 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDE 180
           FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFC EQIHFLGFIVGKDGVKVDE
Sbjct: 728 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCLEQIHFLGFIVGKDGVKVDE 787

Query: 181 EKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQEN 240
           EKVKAI+EW TPTNASEVRSFHGLASFYRRFIKDFSSIASPLT+LVKKHVKFEWKEKQEN
Sbjct: 788 EKVKAIREWPTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTELVKKHVKFEWKEKQEN 847

Query: 241 AFNELKEKLIKAPCLALPNFDKSF 265
           AFNELKEKLIKAPCLALPNFDKSF
Sbjct: 848 AFNELKEKLIKAPCLALPNFDKSF 871

[Close]

BLAST of Cmc03g0074791 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 223.4 bits (568), Expect = 3.0e-57
Identity = 111/254 (43.70%), Postives = 159/254 (62.60%), Query Frame = 0


Query: 2   SPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLKS 61
           SPCS  V+LVPKKDGT+R+CVD R +NK T+    P+PR+D++L  +  A +F+ +DL S
Sbjct: 630 SPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHS 689

Query: 62  GYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVYF 121
           GYHQI M   D +KTAF T  G YE  VMPFGL NAPSTF R +    ++   +FV VY 
Sbjct: 690 GYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYL 749

Query: 122 DDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDEE 181
           DDIL++S+   +H  H+ T+L +L+ E L    KKC F  E+  FLG+ +G   +   + 
Sbjct: 750 DDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQH 809

Query: 182 KVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQENA 241
           K  AI+++ TP    + + F G+ ++YRRFI + S IA P+   +    K +W EKQ+ A
Sbjct: 810 KCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD--KSQWTEKQDKA 869

Query: 242 FNELKEKLIKAPCL 256
            ++LK+ L  +P L
Sbjct: 870 IDKLKDALCNSPVL 879

[Close]

BLAST of Cmc03g0074791 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 221.9 bits (564), Expect = 8.8e-57
Identity = 111/254 (43.70%), Postives = 157/254 (61.81%), Query Frame = 0


Query: 2   SPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLKS 61
           SPCS  V+LVPKKDGT+R+CVD R +NK T+    P+PR+D++L  +  A +F+ +DL S
Sbjct: 656 SPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHS 715

Query: 62  GYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVYF 121
           GYHQI M   D +KTAF T  G YE  VMPFGL NAPSTF R +    ++   +FV VY 
Sbjct: 716 GYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYL 775

Query: 122 DDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDEE 181
           DDIL++S+   +H  H+ T+L +L+ E L    KKC F  E+  FLG+ +G   +   + 
Sbjct: 776 DDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQH 835

Query: 182 KVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQENA 241
           K  AI+++ TP    + + F G+ ++YRRFI + S IA P+   +    K +W EKQ+ A
Sbjct: 836 KCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICD--KSQWTEKQDKA 895

Query: 242 FNELKEKLIKAPCL 256
             +LK  L  +P L
Sbjct: 896 IEKLKAALCNSPVL 905

[Close]

BLAST of Cmc03g0074791 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.3e-56
Identity = 111/269 (41.26%), Postives = 169/269 (62.83%), Query Frame = 0


Query: 2   SPCSVLVILVPKKDGT-----WRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSK 61
           SP +  + +VPKK        +RI +D R +N+ITV  RHPIP +D++L +L   N F+ 
Sbjct: 241 SPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTT 300

Query: 62  IDLKSGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKF 121
           IDL  G+HQI M      KTAF TK G YE L MPFGL NAP+TF R +N +L+  + K 
Sbjct: 301 IDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKH 360

Query: 122 VVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGV 181
            +VY DDI+V+S  L++H+  +  +  KL +  L     KC F +++  FLG ++  DG+
Sbjct: 361 CLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGI 420

Query: 182 KVDEEKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKE 241
           K + EK++AIQ++  PT   E+++F GL  +YR+FI +F+ IA P+TK +KK++K +   
Sbjct: 421 KPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTN 480

Query: 242 KQ-ENAFNELKEKLIKAPCLALPNFDKSF 265
            + ++AF +LK  + + P L +P+F K F
Sbjct: 481 PEYDSAFKKLKYLISEDPILKVPDFTKKF 509

[Close]

BLAST of Cmc03g0074791 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.1e-54
Identity = 109/269 (40.52%), Postives = 165/269 (61.34%), Query Frame = 0


Query: 2   SPCSVLVILVPKKD-----GTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSK 61
           SP +    +VPKK        +R+ +D R +N+IT+  R+PIP +D++L +L     F+ 
Sbjct: 240 SPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTT 299

Query: 62  IDLKSGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKF 121
           IDL  G+HQI M      KTAF TK G YE L MPFGL NAP+TF R +N++L+  + K 
Sbjct: 300 IDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKH 359

Query: 122 VVVYFDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGV 181
            +VY DDI+++S  L +H+  ++ +  KL +  L     KC F +++ +FLG IV  DG+
Sbjct: 360 CLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGI 419

Query: 182 KVDEEKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKE 241
           K +  KVKAI  +  PT   E+R+F GL  +YR+FI +++ IA P+T  +KK  K + ++
Sbjct: 420 KPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQK 479

Query: 242 KQE-NAFNELKEKLIKAPCLALPNFDKSF 265
            +   AF +LK  +I+ P L LP+F+K F
Sbjct: 480 LEYIEAFEKLKALIIRDPILQLPDFEKKF 508

[Close]

BLAST of Cmc03g0074791 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.7e-52
Identity = 99/255 (38.82%), Postives = 153/255 (60.00%), Query Frame = 0


Query: 8   VILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLKSGYHQIR 67
           V+ VPKK+GT R+ VD + +NK      +P+P ++ +L ++ G+ +F+K+DLKS YH IR
Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511

Query: 68  MHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVYFDDILVY 127
           +  GDE K AF+   G++E LVMP+G++ AP+ F   IN +L E     VV Y DDIL++
Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIH 571

Query: 128 SKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDEEKVKAIQ 187
           SK  ++H+ HVK +L KL+   L  N  KC F Q Q+ F+G+ + + G    +E +  + 
Sbjct: 572 SKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVL 631

Query: 188 EWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQENAFNELKE 247
           +W  P N  E+R F G  ++ R+FI   S +  PL  L+KK V+++W   Q  A   +K+
Sbjct: 632 QWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQ 691

Query: 248 KLIKAPCLALPNFDK 263
            L+  P L   +F K
Sbjct: 692 CLVSPPVLRHFDFSK 706

[Close]

BLAST of Cmc03g0074791 vs. ExPASy TrEMBL
Match: A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.6e-146
Identity = 256/264 (96.97%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MSPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 60
           MSPCSV VILVPKKDGTWR+CVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK
Sbjct: 608 MSPCSVPVILVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 667

Query: 61  SGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVY 120
           SGYHQIRMHVGDEWKTAFKTKFGLYE LVMPFGLTNAPSTFMRL+NHVLKEYIGKFVVVY
Sbjct: 668 SGYHQIRMHVGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLKEYIGKFVVVY 727

Query: 121 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDE 180
           FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFC EQIHFLGFIVGKDGVKVDE
Sbjct: 728 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCLEQIHFLGFIVGKDGVKVDE 787

Query: 181 EKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQEN 240
           EKVKAI+EW TPTNASEVRSFHGLASFYRRFIKDFSSIASPLT+LVKKHVKFEWKEKQEN
Sbjct: 788 EKVKAIREWPTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTELVKKHVKFEWKEKQEN 847

Query: 241 AFNELKEKLIKAPCLALPNFDKSF 265
           AFNELKEKLIKAPCLALPNFDKSF
Sbjct: 848 AFNELKEKLIKAPCLALPNFDKSF 871

[Close]

BLAST of Cmc03g0074791 vs. ExPASy TrEMBL
Match: A0A5D3C3D3 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.6e-146
Identity = 256/264 (96.97%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MSPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 60
           MSPCSV VILVPKKDGTWR+CVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK
Sbjct: 608 MSPCSVPVILVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 667

Query: 61  SGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVY 120
           SGYHQIRMHVGDEWKTAFKTKFGLYE LVMPFGLTNAPSTFMRL+NHVLKEYIGKFVVVY
Sbjct: 668 SGYHQIRMHVGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLKEYIGKFVVVY 727

Query: 121 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDE 180
           FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFC EQIHFLGFIVGKDGVKVDE
Sbjct: 728 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCLEQIHFLGFIVGKDGVKVDE 787

Query: 181 EKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQEN 240
           EKVKAI+EW TPTNASEVRSFHGLASFYRRFIKDFSSIASPLT+LVKKHVKFEWKEKQEN
Sbjct: 788 EKVKAIREWPTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTELVKKHVKFEWKEKQEN 847

Query: 241 AFNELKEKLIKAPCLALPNFDKSF 265
           AFNELKEKLIKAPCLALPNFDKSF
Sbjct: 848 AFNELKEKLIKAPCLALPNFDKSF 871

[Close]

BLAST of Cmc03g0074791 vs. ExPASy TrEMBL
Match: A0A5D3CK70 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00110 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.6e-146
Identity = 256/264 (96.97%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MSPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 60
           MSPCSV VILVPKKDGTWR+CVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK
Sbjct: 608 MSPCSVPVILVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 667

Query: 61  SGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVY 120
           SGYHQIRMHVGDEWKTAFKTKFGLYE LVMPFGLTNAPSTFMRL+NHVLKEYIGKFVVVY
Sbjct: 668 SGYHQIRMHVGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLKEYIGKFVVVY 727

Query: 121 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDE 180
           FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFC EQIHFLGFIVGKDGVKVDE
Sbjct: 728 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCLEQIHFLGFIVGKDGVKVDE 787

Query: 181 EKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQEN 240
           EKVKAI+EW TPTNASEVRSFHGLASFYRRFIKDFSSIASPLT+LVKKHVKFEWKEKQEN
Sbjct: 788 EKVKAIREWPTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTELVKKHVKFEWKEKQEN 847

Query: 241 AFNELKEKLIKAPCLALPNFDKSF 265
           AFNELKEKLIKAPCLALPNFDKSF
Sbjct: 848 AFNELKEKLIKAPCLALPNFDKSF 871

[Close]

BLAST of Cmc03g0074791 vs. ExPASy TrEMBL
Match: A0A5D3BWE8 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.6e-146
Identity = 256/264 (96.97%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MSPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 60
           MSPCSV VILVPKKDGTWR+CVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK
Sbjct: 608 MSPCSVPVILVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 667

Query: 61  SGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVY 120
           SGYHQIRMHVGDEWKTAFKTKFGLYE LVMPFGLTNAPSTFMRL+NHVLKEYIGKFVVVY
Sbjct: 668 SGYHQIRMHVGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLKEYIGKFVVVY 727

Query: 121 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDE 180
           FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFC EQIHFLGFIVGKDGVKVDE
Sbjct: 728 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCLEQIHFLGFIVGKDGVKVDE 787

Query: 181 EKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQEN 240
           EKVKAI+EW TPTNASEVRSFHGLASFYRRFIKDFSSIASPLT+LVKKHVKFEWKEKQEN
Sbjct: 788 EKVKAIREWPTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTELVKKHVKFEWKEKQEN 847

Query: 241 AFNELKEKLIKAPCLALPNFDKSF 265
           AFNELKEKLIKAPCLALPNFDKSF
Sbjct: 848 AFNELKEKLIKAPCLALPNFDKSF 871

[Close]

BLAST of Cmc03g0074791 vs. ExPASy TrEMBL
Match: A0A5D3DGA7 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00150 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.6e-146
Identity = 256/264 (96.97%), Postives = 260/264 (98.48%), Query Frame = 0


Query: 1   MSPCSVLVILVPKKDGTWRICVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 60
           MSPCSV VILVPKKDGTWR+CVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK
Sbjct: 507 MSPCSVPVILVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDELHGANLFSKIDLK 566

Query: 61  SGYHQIRMHVGDEWKTAFKTKFGLYESLVMPFGLTNAPSTFMRLINHVLKEYIGKFVVVY 120
           SGYHQIRMHVGDEWKTAFKTKFGLYE LVMPFGLTNAPSTFMRL+NHVLKEYIGKFVVVY
Sbjct: 567 SGYHQIRMHVGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLKEYIGKFVVVY 626

Query: 121 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCQEQIHFLGFIVGKDGVKVDE 180
           FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFC EQIHFLGFIVGKDGVKVDE
Sbjct: 627 FDDILVYSKGLNDHILHVKTILLKLREEKLYANFKKCSFCLEQIHFLGFIVGKDGVKVDE 686

Query: 181 EKVKAIQEWLTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQEN 240
           EKVKAI+EW TPTNASEVRSFHGLASFYRRFIKDFSSIASPLT+LVKKHVKFEWKEKQEN
Sbjct: 687 EKVKAIREWPTPTNASEVRSFHGLASFYRRFIKDFSSIASPLTELVKKHVKFEWKEKQEN 746

Query: 241 AFNELKEKLIKAPCLALPNFDKSF 265
           AFNELKEKLIKAPCLALPNFDKSF
Sbjct: 747 AFNELKEKLIKAPCLALPNFDKSF 770

[Close]

BLAST of Cmc03g0074791 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-20
Identity = 52/130 (40.00%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 137 HVKTILLKLREEKLYANFKKCSFCQEQIHFLG--FIVGKDGVKVDEEKVKAIQEWLTPTN 196
           H+  +L    + + YAN KKC+F Q QI +LG   I+  +GV  D  K++A+  W  P N
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 197 ASEVRSFHGLASFYRRFIKDFSSIASPLTKLVKKHVKFEWKEKQENAFNELKEKLIKAPC 256
            +E+R F GL  +YRRF+K++  I  PLT+L+KK+   +W E    AF  LK  +   P 
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPV 122

Query: 257 LALPNFDKSF 265
           LALP+    F
Sbjct: 123 LALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc03g0074791 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22420.1	3.3e-146	96.97	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK26105.1	3.3e-146	96.97	F15O4.13 [Cucumis melo var. makuwa]	[more]
TYK02449.1	3.3e-146	96.97	F15O4.13 [Cucumis melo var. makuwa]	[more]
TYK11702.1	3.3e-146	96.97	F15O4.13 [Cucumis melo var. makuwa]	[more]
TYK04936.1	3.3e-146	96.97	F15O4.13 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0074791 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	3.0e-57	43.70	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	8.8e-57	43.70	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	3.3e-56	41.26	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.1e-54	40.52	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	1.7e-52	38.82	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc03g0074791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DRJ1	1.6e-146	96.97	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ...	[more]
A0A5D3C3D3	1.6e-146	96.97	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001490 PE=4...	[more]
A0A5D3CK70	1.6e-146	96.97	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00110 PE=4 ...	[more]
A0A5D3BWE8	1.6e-146	96.97	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4...	[more]
A0A5D3DGA7	1.6e-146	96.97	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Cmc03g0074791 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.4e-20	40.00	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..96 e-value: 1.6E-73 score: 248.5
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 10..263
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 10..263
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..171 e-value: 1.1606E-85 score: 251.361
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 36..171 e-value: 1.6E-73 score: 248.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 180..263 e-value: 1.4E-31 score: 110.3
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 11..171 e-value: 1.8E-34 score: 119.2
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..171 score: 15.57879
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0074791.1	Cmc03g0074791.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding