Cmc03g0073941 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0073941
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	TIR-NBS-LRR disease resistance protein
Location	CMiso1.1chr03: 21510778 .. 21511850 (+)
RNA-Seq Expression	Cmc03g0073941
Synteny	Cmc03g0073941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTAATTACTTATTTAATGTTATTGACATAATTAAAGTATTTTTGAAAAAATATTATTTTTAAAAAATATTATTCTTATATATTCTTTCTTTTTATGTCTATAAATAGGATTATATATAAAATTGTAATATTCCATTAATATGAAAGAATCATATATTTTACCTCCGTTCAGATCTCCGATCCAAGCCCTCAACTACAAGTCGTCGTGGAACAGCCGGAATATCCTCACCACCCTCTTTCCTCCTTCATCACACACGCCCACGCACGTCAAAGATTCGTCGAGCAACGGCCGTCAAGATTTGCGTTCCTCCGTCCAGGTTTGAGCATCCAGATTCGCGGCCTTCGCACGTCCCTCCGTCCAGTTGGCTCCGTTAGTCTCCTGTTCTGCTTCAACGAAGATCCGAACGACGCTCACTTCCGACGACGTTCCTTGTTCCCAATCTTCCGCCGCCGACGATATTACCTTGCTCAGTTCTACTCTGTTCTGCTCCGACGACGAAGTAGTCCGTCCGCTTTCTCCGGTTCGGTTTGGCCCCATCCGCGAAGCCCGTCTTCTTCCTTCGCGAAGCACACCGCCGCAAAATCCCACGTCCGCCGCGAATATTTCCCATCCGTTTCAGATGGCCTGTTCTTGTCCGTCGATTTCCGTCACCCATGCTTCTGTTTTCAATTCAGTAGTATGTTCGAGTTTGATTTCATTATAGATATCTCTACGAGGATCTCTCTTTGCCCAGAAGTTCCGGTTTCGTCTATCCTAGGTTCTGTCATGGATCGATCTCTATACGAATATCCATGTCTCTATTTTAGAAGTTCTTCCATTTGTTTTCAGTGGGATCTGTCTTATAAAAATTCCTATGTTTTTGTTGTCGTGGGATTCTGATGATTTGATTACGACGATTTCTTAGAAACACTGAGTTTGAGGGAGGAGGGTATTGACAATTGTCTTATATATTTAAAAAATGAGAGTCTAATTTAGTGAAGAAAAATATAGTTCTCTGAAACTAATAAAACAAATACTAATTATTTATTTTTTTTTATAACACAAACGTCATTCATGTATTAAATTA

mRNA sequence

TTTTTTTTTAATTACTTATTTAATGTTATTGACATAATTAAAGTATTTTTGAAAAAATATTATTTTTAAAAAATATTATTCTTATATATTCTTTCTTTTTATGTCTATAAATAGGATTATATATAAAATTGTAATATTCCATTAATATGAAAGAATCATATATTTTACCTCCGTTCAGATCTCCGATCCAAGCCCTCAACTACAAGTCGTCGTGGAACAGCCGGAATATCCTCACCACCCTCTTTCCTCCTTCATCACACACGCCCACGCACGTCAAAGATTCGTCGAGCAACGGCCGTCAAGATTTGCGTTCCTCCGTCCAGGTTTGAGCATCCAGATTCGCGGCCTTCGCACGTCCCTCCGTCCAGTTGGCTCCGTTAGTCTCCTGTTCTGCTTCAACGAAGATCCGAACGACGCTCACTTCCGACGACGTTCCTTGTTCCCAATCTTCCGCCGCCGACGATATTACCTTGCTCAGTTCTACTCTGTTCTGCTCCGACGACGAAGTAGTCCGTCCGCTTTCTCCGGTTCGGTTTGGCCCCATCCGCGAAGCCCGTCTTCTTCCTTCGCGAAGCACACCGCCGCAAAATCCCACGTCCGCCGCGAATATTTCCCATCCGTTTCAGATGGCCTGTTCTTGTCCGTCGATTTCCGTCACCCATGCTTCTGTTTTCAATTCAGTAGTATGTTCGAGTTTGATTTCATTATAGATATCTCTACGAGGATCTCTCTTTGCCCAGAAGTTCCGGTTTCGTCTATCCTAGGTTCTGTCATGGATCGATCTCTATACGAATATCCATGTCTCTATTTTAGAAGTTCTTCCATTTGTTTTCAGTGGGATCTGTCTTATAAAAATTCCTATGTTTTTGTTGTCGTGGGATTCTGATGATTTGATTACGACGATTTCTTAGAAACACTGAGTTTGAGGGAGGAGGGTATTGACAATTGTCTTATATATTTAAAAAATGAGAGTCTAATTTAGTGAAGAAAAATATAGTTCTCTGAAACTAATAAAACAAATACTAATTATTTATTTTTTTTTATAACACAAACGTCATTCATGTATTAAATTA

Coding sequence (CDS)

ATGAAAGAATCATATATTTTACCTCCGTTCAGATCTCCGATCCAAGCCCTCAACTACAAGTCGTCGTGGAACAGCCGGAATATCCTCACCACCCTCTTTCCTCCTTCATCACACACGCCCACGCACGTCAAAGATTCGTCGAGCAACGGCCGTCAAGATTTGCGTTCCTCCGTCCAGGTTTGA

Protein sequence

MKESYILPPFRSPIQALNYKSSWNSRNILTTLFPPSSHTPTHVKDSSSNGRQDLRSSVQV

Homology

[Close]

BLAST of Cmc03g0073941 vs. NCBI nr
Match: KAA0047973.1 (TIR-NBS-LRR disease resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 4.1e-15
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 5    YILPPFRSPIQALNYKSSWNSRNILTTLFPPSSHTPTHVKDSSSNGR 52
            + LPPFRSPIQA+N KSSWNSRNILTTLFPPSSHTPTH+KDSSSN R
Sbjct: 1212 FALPPFRSPIQAINSKSSWNSRNILTTLFPPSSHTPTHIKDSSSNNR 1258

[Close]

BLAST of Cmc03g0073941 vs. ExPASy TrEMBL
Match: A0A5A7TWK7 (TIR-NBS-LRR disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00340 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 5    YILPPFRSPIQALNYKSSWNSRNILTTLFPPSSHTPTHVKDSSSNGR 52
            + LPPFRSPIQA+N KSSWNSRNILTTLFPPSSHTPTH+KDSSSN R
Sbjct: 1212 FALPPFRSPIQAINSKSSWNSRNILTTLFPPSSHTPTHIKDSSSNNR 1258

The following BLAST results are available for this feature:

BLAST of Cmc03g0073941 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047973.1	4.1e-15	87.23	TIR-NBS-LRR disease resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0073941 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc03g0073941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWK7	2.0e-15	87.23	TIR-NBS-LRR disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of Cmc03g0073941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0073941.1	Cmc03g0073941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding