Cmc03g0073421 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0073421
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr03: 20963366 .. 20963866 (+)
RNA-Seq Expression	Cmc03g0073421
Synteny	Cmc03g0073421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAAAGATATTTTACTGGAAAATGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTTAGACCTCTGTAGTCCGATGAATGTAAAAGCTAGAGAGGGTTTTGAATACTTCATCTCTCTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAACATAAGTCGGAAGCTCTTGAAAAGTTTAAGAAGTATAAGGCTGAAGTTGAAAACCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGACAGAACATGAAATCCAATCTCAGCTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAAAGAAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTATGCTCAAATGCCTAGCTCGTTTTTTGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTTGAAGAGTATTTTTGA

mRNA sequence

ATGACAAAAAGATATTTTACTGGAAAATGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTTAGACCTCTGTAGTCCGATGAATGTAAAAGCTAGAGAGGGTTTTGAATACTTCATCTCTCTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAACATAAGTCGGAAGCTCTTGAAAAGTTTAAGAAGTATAAGGCTGAAGTTGAAAACCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGACAGAACATGAAATCCAATCTCAGCTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAAAGAAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTATGCTCAAATGCCTAGCTCGTTTTTTGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTTGAAGAGTATTTTTGA

Coding sequence (CDS)

ATGACAAAAAGATATTTTACTGGAAAATGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTTAGACCTCTGTAGTCCGATGAATGTAAAAGCTAGAGAGGGTTTTGAATACTTCATCTCTCTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAACATAAGTCGGAAGCTCTTGAAAAGTTTAAGAAGTATAAGGCTGAAGTTGAAAACCTATTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAGGACTATATGACAGAACATGAAATCCAATCTCAGCTCTCAGCACCTGGTACACCTCAACAAAATGGTGTATCAGAAAGAAGAAATAGAACCTTGTTAGACATGGTTCGTTCAATGATGAGTTATGCTCAAATGCCTAGCTCGTTTTTTGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTTGAAGAGTATTTTTGA

Protein sequence

MTKRYFTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSEALEKFKKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQMPSSFFGVCSRDCSSYLEQCSLEEYF

Homology

[Close]

BLAST of Cmc03g0073421 vs. NCBI nr
Match: TYK28885.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-69
Identity = 140/159 (88.05%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MTKRYFTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSE 60
           MTKR FT K YRAKEPLELIH DLC PMNVKAR GFEYFIS IDDYSRYGYLYLMEHKSE
Sbjct: 237 MTKRPFTEKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 296

Query: 61  ALEKFKKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGV 120
           ALEKFK+YKAEVENLLSKKIKILRSD+GGEYMDLRFQDYM EH IQSQLSAPGTPQQNGV
Sbjct: 297 ALEKFKEYKAEVENLLSKKIKILRSDQGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 356

Query: 121 SERRNRTLLDMVRSMMSYAQMPSSFFGVCSRDCSSYLEQ 160
           SERRNRTLLD VRSMMSY Q+PSSF+G    DCSSYLEQ
Sbjct: 357 SERRNRTLLDKVRSMMSYTQLPSSFWG----DCSSYLEQ 391

[Close]

BLAST of Cmc03g0073421 vs. NCBI nr
Match: KAA0065400.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-69
Identity = 140/159 (88.05%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MTKRYFTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSE 60
           MTKR FT K YRAKEPLELIH DLC PMNVKAR GFEYFIS IDDYSRYGYLYLMEHKSE
Sbjct: 226 MTKRPFTEKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 285

Query: 61  ALEKFKKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGV 120
           ALEKFK+YKAEVENLLSKKIKILRSD+GGEYMDLRFQDYM EH IQSQLSAPGTPQQNGV
Sbjct: 286 ALEKFKEYKAEVENLLSKKIKILRSDQGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 345

Query: 121 SERRNRTLLDMVRSMMSYAQMPSSFFGVCSRDCSSYLEQ 160
           SERRNRTLLD VRSMMSY Q+PSSF+G    DCSSYLEQ
Sbjct: 346 SERRNRTLLDKVRSMMSYTQLPSSFWG----DCSSYLEQ 380

[Close]

BLAST of Cmc03g0073421 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-68
Identity = 135/147 (91.84%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MTKRYFTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSE 60
           MTKR FTGK YRAKEPLELIH DLC PMNVKAR GFEYFIS IDDYSRYGYLYLMEHKSE
Sbjct: 391 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 450

Query: 61  ALEKFKKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGV 120
           ALEKFK+YK EVENLLSKKIKILRSDRGGEYMDLRFQDYM EH IQSQLSAPGTPQQNGV
Sbjct: 451 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 510

Query: 121 SERRNRTLLDMVRSMMSYAQMPSSFFG 148
           SERRNRTLLDMVRSMMSYAQ+PSSF+G
Sbjct: 511 SERRNRTLLDMVRSMMSYAQLPSSFWG 537

[Close]

BLAST of Cmc03g0073421 vs. NCBI nr
Match: TYK04171.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-68
Identity = 135/147 (91.84%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MTKRYFTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSE 60
           MTKR FTGK YRAKEPLELIH DLC PMNVKAR GFEYFIS IDDYSRYGYLYLMEHKSE
Sbjct: 265 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 324

Query: 61  ALEKFKKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGV 120
           ALEKFK+YK EVENLLSKKIKILRSDRGGEYMDLRFQDYM EH IQSQLSAPGTPQQNGV
Sbjct: 325 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 384

Query: 121 SERRNRTLLDMVRSMMSYAQMPSSFFG 148
           SERRNRTLLDMVRSMMSYAQ+PSSF+G
Sbjct: 385 SERRNRTLLDMVRSMMSYAQLPSSFWG 411

[Close]

BLAST of Cmc03g0073421 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-68
Identity = 135/147 (91.84%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MTKRYFTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSE 60
           MTKR FTGK YRAKEPLELIH DLC PMNVKAR GFEYFIS IDDYSRYGYLYLMEHKSE
Sbjct: 265 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 324

Query: 61  ALEKFKKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGV 120
           ALEKFK+YK EVENLLSKKIKILRSDRGGEYMDLRFQDYM EH IQSQLSAPGTPQQNGV
Sbjct: 325 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 384

Query: 121 SERRNRTLLDMVRSMMSYAQMPSSFFG 148
           SERRNRTLLDMVRSMMSYAQ+PSSF+G
Sbjct: 385 SERRNRTLLDMVRSMMSYAQLPSSFWG 411

[Close]

BLAST of Cmc03g0073421 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.2e-28
Identity = 57/131 (43.51%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 17  LELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSEALEKFKKYKAEVENLL 76
           L+L++ D+C PM +++  G +YF++ IDD SR  ++Y+++ K +  + F+K+ A VE   
Sbjct: 481 LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERET 540

Query: 77  SKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMM 136
            +K+K LRSD GGEY    F++Y + H I+ + + PGTPQ NGV+ER NRT+++ VRSM+
Sbjct: 541 GRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSML 600

Query: 137 SYAQMPSSFFG 148
             A++P SF+G
Sbjct: 601 RMAKLPKSFWG 611

[Close]

BLAST of Cmc03g0073421 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-18
Identity = 47/141 (33.33%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 6   FTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSEALEKF 65
           F+     + +PLE I+ D+ S   + + + + Y++  +D ++RY +LY ++ KS+  + F
Sbjct: 492 FSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTF 551

Query: 66  KKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGVSERRN 125
             +K+ VEN    +I  L SD GGE++ LR  DY+++H I    S P TP+ NG+SER++
Sbjct: 552 IIFKSLVENRFQTRIGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKH 611

Query: 126 RTLLDMVRSMMSYAQMPSSFF 147
           R +++M  +++S+A +P +++
Sbjct: 612 RHIVEMGLTLLSHASVPKTYW 629

[Close]

BLAST of Cmc03g0073421 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-17
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 14  KEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSEALEKFKKYKAEVE 73
           K PL ++H D+C P+     +   YF+  +D ++ Y   YL+++KS+    F+ + A+ E
Sbjct: 478 KRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSE 537

Query: 74  NLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGVSERRNRTLLDMVR 133
              + K+  L  D G EY+    + +  +  I   L+ P TPQ NGVSER  RT+ +  R
Sbjct: 538 AHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKAR 597

Query: 134 SMMSYAQMPSSFFG 148
           +M+S A++  SF+G
Sbjct: 598 TMVSGAKLDKSFWG 611

[Close]

BLAST of Cmc03g0073421 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 43/141 (30.50%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 6   FTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSEALEKF 65
           F+     +  PLE I+ D+ S   + + + + Y++  +D ++RY +LY ++ KS+  E F
Sbjct: 513 FSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETF 572

Query: 66  KKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGVSERRN 125
             +K  +EN    +I    SD GGE++ L   +Y ++H I    S P TP+ NG+SER++
Sbjct: 573 ITFKNLLENRFQTRIGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKH 632

Query: 126 RTLLDMVRSMMSYAQMPSSFF 147
           R +++   +++S+A +P +++
Sbjct: 633 RHIVETGLTLLSHASIPKTYW 650

[Close]

BLAST of Cmc03g0073421 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 36/137 (26.28%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 9   KCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSE--ALEKFK 68
           K   + EP + +H D+  P++   +    YFIS  D+ +R+ ++Y +  + E   L  F 
Sbjct: 653 KYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFT 712

Query: 69  KYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGVSERRNR 128
              A ++N  + ++ +++ DRG EY +     + T   I +  +     + +GV+ER NR
Sbjct: 713 SILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNR 772

Query: 129 TLLDMVRSMMSYAQMPS 144
           TLL+  R+++  + +P+
Sbjct: 773 TLLNDCRTLLHCSGLPN 789

[Close]

BLAST of Cmc03g0073421 vs. ExPASy TrEMBL
Match: A0A5D3DZX8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold381G00320 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.9e-70
Identity = 140/159 (88.05%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MTKRYFTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSE 60
           MTKR FT K YRAKEPLELIH DLC PMNVKAR GFEYFIS IDDYSRYGYLYLMEHKSE
Sbjct: 237 MTKRPFTEKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 296

Query: 61  ALEKFKKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGV 120
           ALEKFK+YKAEVENLLSKKIKILRSD+GGEYMDLRFQDYM EH IQSQLSAPGTPQQNGV
Sbjct: 297 ALEKFKEYKAEVENLLSKKIKILRSDQGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 356

Query: 121 SERRNRTLLDMVRSMMSYAQMPSSFFGVCSRDCSSYLEQ 160
           SERRNRTLLD VRSMMSY Q+PSSF+G    DCSSYLEQ
Sbjct: 357 SERRNRTLLDKVRSMMSYTQLPSSFWG----DCSSYLEQ 391

[Close]

BLAST of Cmc03g0073421 vs. ExPASy TrEMBL
Match: A0A5A7VDX8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00700 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.9e-70
Identity = 140/159 (88.05%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 1   MTKRYFTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSE 60
           MTKR FT K YRAKEPLELIH DLC PMNVKAR GFEYFIS IDDYSRYGYLYLMEHKSE
Sbjct: 226 MTKRPFTEKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 285

Query: 61  ALEKFKKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGV 120
           ALEKFK+YKAEVENLLSKKIKILRSD+GGEYMDLRFQDYM EH IQSQLSAPGTPQQNGV
Sbjct: 286 ALEKFKEYKAEVENLLSKKIKILRSDQGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 345

Query: 121 SERRNRTLLDMVRSMMSYAQMPSSFFGVCSRDCSSYLEQ 160
           SERRNRTLLD VRSMMSY Q+PSSF+G    DCSSYLEQ
Sbjct: 346 SERRNRTLLDKVRSMMSYTQLPSSFWG----DCSSYLEQ 380

[Close]

BLAST of Cmc03g0073421 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68
Identity = 135/147 (91.84%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MTKRYFTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSE 60
           MTKR FTGK YRAKEPLELIH DLC PMNVKAR GFEYFIS IDDYSRYGYLYLMEHKSE
Sbjct: 391 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 450

Query: 61  ALEKFKKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGV 120
           ALEKFK+YK EVENLLSKKIKILRSDRGGEYMDLRFQDYM EH IQSQLSAPGTPQQNGV
Sbjct: 451 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 510

Query: 121 SERRNRTLLDMVRSMMSYAQMPSSFFG 148
           SERRNRTLLDMVRSMMSYAQ+PSSF+G
Sbjct: 511 SERRNRTLLDMVRSMMSYAQLPSSFWG 537

[Close]

BLAST of Cmc03g0073421 vs. ExPASy TrEMBL
Match: A0A5D3BUN8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00360 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68
Identity = 135/147 (91.84%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MTKRYFTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSE 60
           MTKR FTGK YRAKEPLELIH DLC PMNVKAR GFEYFIS IDDYSRYGYLYLMEHKSE
Sbjct: 265 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 324

Query: 61  ALEKFKKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGV 120
           ALEKFK+YK EVENLLSKKIKILRSDRGGEYMDLRFQDYM EH IQSQLSAPGTPQQNGV
Sbjct: 325 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 384

Query: 121 SERRNRTLLDMVRSMMSYAQMPSSFFG 148
           SERRNRTLLDMVRSMMSYAQ+PSSF+G
Sbjct: 385 SERRNRTLLDMVRSMMSYAQLPSSFWG 411

[Close]

BLAST of Cmc03g0073421 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.1e-68
Identity = 135/147 (91.84%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MTKRYFTGKCYRAKEPLELIHLDLCSPMNVKAREGFEYFISLIDDYSRYGYLYLMEHKSE 60
           MTKR FTGK YRAKEPLELIH DLC PMNVKAR GFEYFIS IDDYSRYGYLYLMEHKSE
Sbjct: 265 MTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGFEYFISFIDDYSRYGYLYLMEHKSE 324

Query: 61  ALEKFKKYKAEVENLLSKKIKILRSDRGGEYMDLRFQDYMTEHEIQSQLSAPGTPQQNGV 120
           ALEKFK+YK EVENLLSKKIKILRSDRGGEYMDLRFQDYM EH IQSQLSAPGTPQQNGV
Sbjct: 325 ALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQNGV 384

Query: 121 SERRNRTLLDMVRSMMSYAQMPSSFFG 148
           SERRNRTLLDMVRSMMSYAQ+PSSF+G
Sbjct: 385 SERRNRTLLDMVRSMMSYAQLPSSFWG 411

The following BLAST results are available for this feature:

BLAST of Cmc03g0073421 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28885.1	1.2e-69	88.05	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0065400.1	1.2e-69	88.05	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	2.3e-68	91.84	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
TYK04171.1	2.3e-68	91.84	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0059226.1	2.3e-68	91.84	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0073421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.2e-28	43.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	3.0e-18	33.33	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	2.5e-17	33.58	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.4e-15	30.50	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	2.3e-10	26.28	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc03g0073421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZX8	5.9e-70	88.05	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold381G0032...	[more]
A0A5A7VDX8	5.9e-70	88.05	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00700...	[more]
A0A5A7TZD0	1.1e-68	91.84	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3BUN8	1.1e-68	91.84	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G0036...	[more]
A0A5A7UYE8	1.1e-68	91.84	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]

BLAST of Cmc03g0073421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 58..78
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 12..141
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 12..141
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 9..160 e-value: 1.3E-30 score: 108.1
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 14..115 e-value: 4.7E-12 score: 46.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 12..166 score: 20.106445
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 10..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0073421.1	Cmc03g0073421.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding