Cmc03g0072971 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0072971
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr03: 20305349 .. 20305912 (-)
RNA-Seq Expression	Cmc03g0072971
Synteny	Cmc03g0072971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCAAATGCTTCTAGTTCTGCTTACGTGATTGAATCTGCTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGGAAACTTAAAGACTTGAGACTTATTAATACTTCTGAGTCGCATGAAACTGGCAAATGCCCCATTTGTGTAAAAAGTAAATTCCATAAGAAACCTTTCAAACCAGTTGAATATAGAACTACTGATATGTTAGAATTAATTCACTCGGATCTAGCCGATTTTAGAACCACTACTAGTAGAGGTGGTAAAAACTACTATGTATCCTTTATTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTGGTAGTATGTTTTTAAAATTCAAGGCAGAATCTGAGAATCAGTTAGGAAAGAAGATAAAAAGATTAAGATCAGATAGAGGTAGTGAGTATTCTGGTAAAACTCTTAAAGAATTTTGTGAGTCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCAAAACAAAATGACATAGCAGAACGAAAAACAGAACTATTAAAGAAATGA

mRNA sequence

ATGAATGCAAATGCTTCTAGTTCTGCTTACGTGATTGAATCTGCTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGGAAACTTAAAGACTTGAGACTTATTAATACTTCTGAGTCGCATGAAACTGGCAAATGCCCCATTTGTGTAAAAAGTAAATTCCATAAGAAACCTTTCAAACCAGTTGAATATAGAACTACTGATATGTTAGAATTAATTCACTCGGATCTAGCCGATTTTAGAACCACTACTAGTAGAGGTGGTAAAAACTACTATGTATCCTTTATTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTGGTAGTATGTTTTTAAAATTCAAGGCAGAATCTGAGAATCAGTTAGGAAAGAAGATAAAAAGATTAAGATCAGATAGAGGTAGTGAGTATTCTGGTAAAACTCTTAAAGAATTTTGTGAGTCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCAAAACAAAATGACATAGCAGAACGAAAAACAGAACTATTAAAGAAATGA

Coding sequence (CDS)

ATGAATGCAAATGCTTCTAGTTCTGCTTACGTGATTGAATCTGCTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGGAAACTTAAAGACTTGAGACTTATTAATACTTCTGAGTCGCATGAAACTGGCAAATGCCCCATTTGTGTAAAAAGTAAATTCCATAAGAAACCTTTCAAACCAGTTGAATATAGAACTACTGATATGTTAGAATTAATTCACTCGGATCTAGCCGATTTTAGAACCACTACTAGTAGAGGTGGTAAAAACTACTATGTATCCTTTATTGATGATTACTCTAGATTCACTAAGATATACCTGATAAAAACAAAAAATGAAGCTGGTAGTATGTTTTTAAAATTCAAGGCAGAATCTGAGAATCAGTTAGGAAAGAAGATAAAAAGATTAAGATCAGATAGAGGTAGTGAGTATTCTGGTAAAACTCTTAAAGAATTTTGTGAGTCAAATGGTATCATCCATGAATTTACTGCTCCTTACTCACCAAAACAAAATGACATAGCAGAACGAAAAACAGAACTATTAAAGAAATGA

Protein sequence

MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERKTELLKK

Homology

[Close]

BLAST of Cmc03g0072971 vs. NCBI nr
Match: KAA0054462.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 349.4 bits (895), Expect = 2.0e-92
Identity = 170/187 (90.91%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSE+HETGKCPICV+SKFHK
Sbjct: 381 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDLRLINTSETHETGKCPICVESKFHK 440

Query: 61  KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGS 120
           KPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+DDYSRFTKIYLIKTKNEA  
Sbjct: 441 KPFKPVEYRTTELLELIHSDLADFRTTTSRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVG 500

Query: 121 MFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 180
           MFLKFKAESENQLGKKIKRLRSDRG EYS KTLKEFCESNGIIHEFT PYSP+QN IAER
Sbjct: 501 MFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTTPYSPQQNGIAER 560

Query: 181 KTELLKK 188
           K   LK+
Sbjct: 561 KNRTLKE 567

[Close]

BLAST of Cmc03g0072971 vs. NCBI nr
Match: KAA0058501.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 348.2 bits (892), Expect = 4.4e-92
Identity = 169/187 (90.37%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHK 60
           MNAN SSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPIC++SKFHK
Sbjct: 345 MNANVSSSAYLIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICIESKFHK 404

Query: 61  KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGS 120
           KPFKPVEYRTT++LELIHSDLADFRTTTSRG KNYYVSF+DDYSRFTKIYLIKTKNEA S
Sbjct: 405 KPFKPVEYRTTELLELIHSDLADFRTTTSRGSKNYYVSFVDDYSRFTKIYLIKTKNEAVS 464

Query: 121 MFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 180
           MFLKFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAER
Sbjct: 465 MFLKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 524

Query: 181 KTELLKK 188
           K   LK+
Sbjct: 525 KNRTLKE 531

[Close]

BLAST of Cmc03g0072971 vs. NCBI nr
Match: TYK07244.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 348.2 bits (892), Expect = 4.4e-92
Identity = 169/187 (90.37%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHK 60
           MNAN SSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPIC++SKFHK
Sbjct: 345 MNANVSSSAYLIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICIESKFHK 404

Query: 61  KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGS 120
           KPFKPVEYRTT++LELIHSDLADFRTTTSRG KNYYVSF+DDYSRFTKIYLIKTKNEA S
Sbjct: 405 KPFKPVEYRTTELLELIHSDLADFRTTTSRGSKNYYVSFVDDYSRFTKIYLIKTKNEAVS 464

Query: 121 MFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 180
           MFLKFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAER
Sbjct: 465 MFLKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 524

Query: 181 KTELLKK 188
           K   LK+
Sbjct: 525 KNRTLKE 531

[Close]

BLAST of Cmc03g0072971 vs. NCBI nr
Match: TYK23593.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 347.8 bits (891), Expect = 5.7e-92
Identity = 167/187 (89.30%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTS++HETGKCP+C++SKFHK
Sbjct: 451 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDLRLINTSKTHETGKCPVCIESKFHK 510

Query: 61  KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGS 120
           KPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+DDYSRFTKIYLIKTKNEA S
Sbjct: 511 KPFKPVEYRTTELLELIHSDLADFRTTTSRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 570

Query: 121 MFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 180
           MF+KFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 181 KTELLKK 188
           K   LK+
Sbjct: 631 KNRTLKE 637

[Close]

BLAST of Cmc03g0072971 vs. NCBI nr
Match: KAA0063949.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.3 bits (887), Expect = 1.7e-91
Identity = 169/187 (90.37%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHK 60
           MNANASSSAY+IESANLWHGRL HVNFASIRKLKDLRLINTSE+HETGKCPICV+SKFHK
Sbjct: 251 MNANASSSAYLIESANLWHGRLEHVNFASIRKLKDLRLINTSETHETGKCPICVESKFHK 310

Query: 61  KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGS 120
           KPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+DDYSRFTKIYLIKTKNEA S
Sbjct: 311 KPFKPVEYRTTELLELIHSDLADFRTTTSRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 370

Query: 121 MFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 180
           MFLKFKA+SENQL K+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QNDIAER
Sbjct: 371 MFLKFKAKSENQLRKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNDIAER 430

Query: 181 KTELLKK 188
           K   LK+
Sbjct: 431 KNRTLKE 437

[Close]

BLAST of Cmc03g0072971 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.0e-30
Identity = 65/167 (38.92%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 14  SANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDM 73
           S +LWH R+GH++   ++ L    LI+ ++      C  C+  K H+  F+    R  ++
Sbjct: 421 SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNI 480

Query: 74  LELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGSMFLKFKAESENQL 133
           L+L++SD+       S GG  Y+V+FIDD SR   +Y++KTK++   +F KF A  E + 
Sbjct: 481 LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERET 540

Query: 134 GKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 181
           G+K+KRLRSD G EY+ +  +E+C S+GI HE T P +P+ N +AER
Sbjct: 541 GRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAER 587

[Close]

BLAST of Cmc03g0072971 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-20
Identity = 57/172 (33.14%), Postives = 90/172 (52.33%), Query Frame = 0


Query: 17  LWHGRLGHVNFASIRKLK------DLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRT 76
           LWH R GH++   + ++K      D  L+N  E      C  C+  K  + PFK ++ +T
Sbjct: 417 LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLEL-SCEICEPCLNGKQARLPFKQLKDKT 476

Query: 77  --TDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGSMFLKFKAE 136
                L ++HSD+    T  +   KNY+V F+D ++ +   YLIK K++  SMF  F A+
Sbjct: 477 HIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAK 536

Query: 137 SENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 181
           SE     K+  L  D G EY    +++FC   GI +  T P++P+ N ++ER
Sbjct: 537 SEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSER 587

[Close]

BLAST of Cmc03g0072971 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-18
Identity = 54/165 (32.73%), Postives = 88/165 (53.33%), Query Frame = 0


Query: 18  WHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVKSKFHKKPFKPVEYRTTDMLEL 77
           WH RLGH + A +   + +  L   + SH+   C  C  +K HK PF      ++  LE 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 78  IHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGSMFLKFKAESENQLGKK 137
           I+SD+       S     YYV F+D ++R+T +Y +K K++    F+ FK+  EN+   +
Sbjct: 506 IYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTR 565

Query: 138 IKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERK 182
           I  L SD G E+    L+++   +GI H  + P++P+ N ++ERK
Sbjct: 566 IGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERK 607

[Close]

BLAST of Cmc03g0072971 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 57/178 (32.02%), Postives = 91/178 (51.12%), Query Frame = 0


Query: 5   ASSSAYVIESANLWHGRLGHVNFASIRK-LKDLRLINTSESHETGKCPICVKSKFHKKPF 64
           AS S+    S+  WH RLGH   + +   + +  L   + SH+   C  C+ +K +K PF
Sbjct: 456 ASPSSKATHSS--WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPF 515

Query: 65  KPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGSMFL 124
                 +T  LE I+SD+       S     YYV F+D ++R+T +Y +K K++    F+
Sbjct: 516 SQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFI 575

Query: 125 KFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAERK 182
            FK   EN+   +I    SD G E+    L E+   +GI H  + P++P+ N ++ERK
Sbjct: 576 TFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNGLSERK 628

[Close]

BLAST of Cmc03g0072971 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-12
Identity = 55/190 (28.95%), Postives = 89/190 (46.84%), Query Frame = 0


Query: 17  LWHGRLGHVNFASIRK-LKDLRLINTSESH------ETGKCPICV--KSKFHK------- 76
           L H  LGH NF SI+K LK   +    ES        T +CP C+  KS  H+       
Sbjct: 593 LIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHVKGSRL 652

Query: 77  ---KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNE 136
              + ++P +Y  TD+   +H           +   +Y++SF D+ +RF  +Y +  + E
Sbjct: 653 KYQESYEPFQYLHTDIFGPVHH--------LPKSAPSYFISFTDEKTRFQWVYPLHDRRE 712

Query: 137 AG--SMFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQN 186
               ++F    A  +NQ   ++  ++ DRGSEY+ KTL +F  + GI   +T     + +
Sbjct: 713 ESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAH 772

[Close]

BLAST of Cmc03g0072971 vs. ExPASy TrEMBL
Match: A0A5A7UFB4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002340 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.6e-93
Identity = 170/187 (90.91%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSE+HETGKCPICV+SKFHK
Sbjct: 381 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDLRLINTSETHETGKCPICVESKFHK 440

Query: 61  KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGS 120
           KPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+DDYSRFTKIYLIKTKNEA  
Sbjct: 441 KPFKPVEYRTTELLELIHSDLADFRTTTSRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVG 500

Query: 121 MFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 180
           MFLKFKAESENQLGKKIKRLRSDRG EYS KTLKEFCESNGIIHEFT PYSP+QN IAER
Sbjct: 501 MFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTTPYSPQQNGIAER 560

Query: 181 KTELLKK 188
           K   LK+
Sbjct: 561 KNRTLKE 567

[Close]

BLAST of Cmc03g0072971 vs. ExPASy TrEMBL
Match: A0A5A7UYD5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00940 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.1e-92
Identity = 169/187 (90.37%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHK 60
           MNAN SSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPIC++SKFHK
Sbjct: 345 MNANVSSSAYLIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICIESKFHK 404

Query: 61  KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGS 120
           KPFKPVEYRTT++LELIHSDLADFRTTTSRG KNYYVSF+DDYSRFTKIYLIKTKNEA S
Sbjct: 405 KPFKPVEYRTTELLELIHSDLADFRTTTSRGSKNYYVSFVDDYSRFTKIYLIKTKNEAVS 464

Query: 121 MFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 180
           MFLKFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAER
Sbjct: 465 MFLKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 524

Query: 181 KTELLKK 188
           K   LK+
Sbjct: 525 KNRTLKE 531

[Close]

BLAST of Cmc03g0072971 vs. ExPASy TrEMBL
Match: A0A5D3C7N0 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001400 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.1e-92
Identity = 169/187 (90.37%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHK 60
           MNAN SSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPIC++SKFHK
Sbjct: 345 MNANVSSSAYLIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICIESKFHK 404

Query: 61  KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGS 120
           KPFKPVEYRTT++LELIHSDLADFRTTTSRG KNYYVSF+DDYSRFTKIYLIKTKNEA S
Sbjct: 405 KPFKPVEYRTTELLELIHSDLADFRTTTSRGSKNYYVSFVDDYSRFTKIYLIKTKNEAVS 464

Query: 121 MFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 180
           MFLKFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAER
Sbjct: 465 MFLKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 524

Query: 181 KTELLKK 188
           K   LK+
Sbjct: 525 KNRTLKE 531

[Close]

BLAST of Cmc03g0072971 vs. ExPASy TrEMBL
Match: A0A5D3DJ22 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001050 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.8e-92
Identity = 167/187 (89.30%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHK 60
           MNANASSSAY+IESANLWHGRLGHVNFASIRKLKDLRLINTS++HETGKCP+C++SKFHK
Sbjct: 451 MNANASSSAYLIESANLWHGRLGHVNFASIRKLKDLRLINTSKTHETGKCPVCIESKFHK 510

Query: 61  KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGS 120
           KPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+DDYSRFTKIYLIKTKNEA S
Sbjct: 511 KPFKPVEYRTTELLELIHSDLADFRTTTSRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 570

Query: 121 MFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 180
           MF+KFKAESENQLGK+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QN IAER
Sbjct: 571 MFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNGIAER 630

Query: 181 KTELLKK 188
           K   LK+
Sbjct: 631 KNRTLKE 637

[Close]

BLAST of Cmc03g0072971 vs. ExPASy TrEMBL
Match: A0A5A7VEJ0 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00950 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.1e-92
Identity = 169/187 (90.37%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MNANASSSAYVIESANLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVKSKFHK 60
           MNANASSSAY+IESANLWHGRL HVNFASIRKLKDLRLINTSE+HETGKCPICV+SKFHK
Sbjct: 251 MNANASSSAYLIESANLWHGRLEHVNFASIRKLKDLRLINTSETHETGKCPICVESKFHK 310

Query: 61  KPFKPVEYRTTDMLELIHSDLADFRTTTSRGGKNYYVSFIDDYSRFTKIYLIKTKNEAGS 120
           KPFKPVEYRTT++LELIHSDLADFRTTTSRGGKNYYVSF+DDYSRFTKIYLIKTKNEA S
Sbjct: 311 KPFKPVEYRTTELLELIHSDLADFRTTTSRGGKNYYVSFVDDYSRFTKIYLIKTKNEAVS 370

Query: 121 MFLKFKAESENQLGKKIKRLRSDRGSEYSGKTLKEFCESNGIIHEFTAPYSPKQNDIAER 180
           MFLKFKA+SENQL K+IKRLRSDRG EYS KTLKEFCESNGIIHEFTAPYSP+QNDIAER
Sbjct: 371 MFLKFKAKSENQLRKRIKRLRSDRGGEYSDKTLKEFCESNGIIHEFTAPYSPQQNDIAER 430

Query: 181 KTELLKK 188
           K   LK+
Sbjct: 431 KNRTLKE 437

The following BLAST results are available for this feature:

BLAST of Cmc03g0072971 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054462.1	2.0e-92	90.91	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0058501.1	4.4e-92	90.37	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07244.1	4.4e-92	90.37	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK23593.1	5.7e-92	89.30	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063949.1	1.7e-91	90.37	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0072971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.0e-30	38.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.6e-20	33.14	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	3.3e-18	32.73	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.1e-16	32.02	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	2.1e-12	28.95	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc03g0072971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFB4	9.6e-93	90.91	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UYD5	2.1e-92	90.37	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C7N0	2.1e-92	90.37	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DJ22	2.8e-92	89.30	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VEJ0	8.1e-92	90.37	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc03g0072971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 66..187 e-value: 9.8E-27 score: 95.5
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 74..172 e-value: 2.2E-15 score: 56.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 61..187 score: 19.625042
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 4..57 e-value: 2.8E-11 score: 43.1
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 16..176
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 16..176
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 69..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0072971.1	Cmc03g0072971.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding