Cmc03g0072961 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0072961
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr03: 20304402 .. 20304968 (-)
RNA-Seq Expression	Cmc03g0072961
Synteny	Cmc03g0072961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGATCATGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTGATACTTCAAACCTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACTTTCATAGTGGAAACACGTGATGAAATTGACTGTAACTTCACAAACTTGTACTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCGTTGAACTATGTAGGTTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTAATCATGAATCATACATGGGACCTAGTGGACCTTCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGACTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCATTGATTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGCCTTAATTGCATTAGCCGCAATATATAACCTTCTTATTCACCAAATGGACGTAAAAACAGCTTTTTAA

mRNA sequence

ATGCATGATCATGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTGATACTTCAAACCTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACTTTCATAGTGGAAACACGTGATGAAATTGACTGTAACTTCACAAACTTGTACTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCGTTGAACTATGTAGGTTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTAATCATGAATCATACATGGGACCTAGTGGACCTTCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGACTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCATTGATTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGCCTTAATTGCATTAGCCGCAATATATAACCTTCTTATTCACCAAATGGACGTAAAAACAGCTTTTTAA

Coding sequence (CDS)

ATGCATGATCATGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTGATACTTCAAACCTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACTTTCATAGTGGAAACACGTGATGAAATTGACTGTAACTTCACAAACTTGTACTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCGTTGAACTATGTAGGTTCAAGTATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTAATCATGAATCATACATGGGACCTAGTGGACCTTCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGACTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCATTGATTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGCCTTAATTGCATTAGCCGCAATATATAACCTTCTTATTCACCAAATGGACGTAAAAACAGCTTTTTAA

Protein sequence

MHDHENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVETRDEIDCNFTNLYLIDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIYNLLIHQMDVKTAF

Homology

[Close]

BLAST of Cmc03g0072961 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 337.8 bits (865), Expect = 6.0e-89
Identity = 169/188 (89.89%), Postives = 173/188 (92.02%), Query Frame = 0


Query: 1   MHDHENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVETRDEIDC 60
           MHD   P IVSE PVSETVDT NL CELE RRSKRQRTEKSFGPDFLSTFIVE RDEIDC
Sbjct: 766 MHD---PEIVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKW 120
           NFTNL+LIDEDPKTYQEALN V S MWKEAIKSELDSL MNHTW+LVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIYNLLIH 180
           IFKRKTKPNG IERYK RLVVVGYTQKQG+DYFDTYSPVTKITTIRALIALAAI+NLLIH
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIH 945

Query: 181 QMDVKTAF 189
           QMDVKTAF
Sbjct: 946 QMDVKTAF 950

[Close]

BLAST of Cmc03g0072961 vs. NCBI nr
Match: KAA0042080.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK18022.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 314.7 bits (805), Expect = 5.4e-82
Identity = 156/168 (92.86%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MHDHENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVETRDEIDC 60
           MHD ENPSIVSE PVSETVDTSNLRCELELRRSKRQRTEKSFG DFLSTFIVE RDEID 
Sbjct: 496 MHDPENPSIVSEIPVSETVDTSNLRCELELRRSKRQRTEKSFGQDFLSTFIVERRDEIDR 555

Query: 61  NFTNLYLIDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQEALN V  SMWKEAI SELDSL+MNHTWDLVDLPM NKPIRCKW
Sbjct: 556 NFTNLYLIDEDPKTYQEALNSVDLSMWKEAINSELDSLVMNHTWDLVDLPMENKPIRCKW 615

Query: 121 IFKRKTKPNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 169
           IFKRKTKPNGSIERYK RLVVVGYTQKQGIDYFDTYSPVTKITTIRAL
Sbjct: 616 IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 663

[Close]

BLAST of Cmc03g0072961 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-75
Identity = 145/166 (87.35%), Postives = 149/166 (89.76%), Query Frame = 0


Query: 1   MHDHENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVETRDEIDC 60
           MHD   P IVSE PVSE VDT NL CELE RRSKRQRTEKSFGPDFLSTFIVE RDEIDC
Sbjct: 766 MHD---PEIVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKW 120
           NFTNL+LI+ED KTYQEALN V S MWKEAIKSELDSL MNHTW+LVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIR 167
           IFKRKTKPNG IERYK RLVVVGYTQKQG+DYFDTYSPVTKITTIR
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc03g0072961 vs. NCBI nr
Match: KAA0038001.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.1 bits (749), Expect = 1.7e-75
Identity = 143/159 (89.94%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 1   MHDHENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVETRDEIDC 60
           MHD EN SIVSET VSE V+TSNLRCELELRRSKRQRTEKSF PDFLSTFIVE RDEID 
Sbjct: 494 MHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVERRDEIDF 553

Query: 61  NFTNLYLIDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQE LN V  SMWKEAIKSELDSL+MNHTWDLVDLPMGNKPIRC+W
Sbjct: 554 NFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCRW 613

Query: 121 IFKRKTKPNGSIERYKTRLVVVGYTQKQGIDYFDTYSPV 160
           IFKRKTKPNGS+ERYK RLVVVGYTQKQGIDYFDTYSPV
Sbjct: 614 IFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc03g0072961 vs. NCBI nr
Match: TYJ97996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.3 bits (726), Expect = 7.8e-73
Identity = 138/145 (95.17%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MHDHENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVETRDEIDC 60
           MHD ENPSIVSETPVSETV+TSNLRCELEL RSKRQRTEKSFGPDFLSTFIVE RDEIDC
Sbjct: 350 MHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVERRDEIDC 409

Query: 61  NFTNLYLIDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQEALN V SSMWKEAIKSELDSL+MNHTWDLVDLPMGNKPIRCKW
Sbjct: 410 NFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 469

Query: 121 IFKRKTKPNGSIERYKTRLVVVGYT 146
           IFKRKTKPNGSIERYKTRLVVVGYT
Sbjct: 470 IFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc03g0072961 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.7e-26
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 0


Query: 30  LRRSKRQRTEKSFGPDFLSTFIVETRDEIDCNFTNLYLIDEDPKTYQEALNYVGSSMWKE 89
           LRRS+R R E    P   ST  V   D            D +P++ +E L++   +   +
Sbjct: 784 LRRSERPRVESRRYP---STEYVLISD------------DREPESLKEVLSHPEKNQLMK 843

Query: 90  AIKSELDSLIMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKTRLVVVGYTQKQG 149
           A++ E++SL  N T+ LV+LP G +P++CKW+FK K   +  + RYK RLVV G+ QK+G
Sbjct: 844 AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 903

Query: 150 IDYFDTYSPVTKITTIRALIALAAIYNLLIHQMDVKTAF 189
           ID+ + +SPV K+T+IR +++LAA  +L + Q+DVKTAF
Sbjct: 904 IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAF 927

[Close]

BLAST of Cmc03g0072961 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-21
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 69   DEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPI-RCKWIFKRKTK 128
            + +P+T  +AL       W+ A+ SE+++ I NHTWDLV  P  +  I  C+WIF +K  
Sbjct: 953  ESEPRTAIQALK---DERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYN 1012

Query: 129  PNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIYNLLIHQMDVKTA 188
             +GS+ RYK RLV  GY Q+ G+DY +T+SPV K T+IR ++ +A   +  I Q+DV  A
Sbjct: 1013 SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1070

[Close]

BLAST of Cmc03g0072961 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 101.7 bits (252), Expect = 9.4e-21
Identity = 69/201 (34.33%), Postives = 103/201 (51.24%), Query Frame = 0


Query: 3    DHENPSIVSETP----VSETVD----------TSNLRCELELRRSKRQRTEKSFGPDFLS 62
            DH N S  S  P     SET +          T N   E+  RRS+R +T+     +   
Sbjct: 814  DHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYN--- 873

Query: 63   TFIVETRDEIDCNFTNLYLIDED-PKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLV 122
                E  + ++    N + I  D P ++ E       S W+EAI +EL++  +N+TW + 
Sbjct: 874  ----EEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTIT 933

Query: 123  DLPMGNKPIRCKWIFKRKTKPNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIRA 182
              P     +  +W+F  K    G+  RYK RLV  G+TQK  IDY +T++PV +I++ R 
Sbjct: 934  KRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRF 993

Query: 183  LIALAAIYNLLIHQMDVKTAF 189
            +++L   YNL +HQMDVKTAF
Sbjct: 994  ILSLVIQYNLKVHQMDVKTAF 1007

[Close]

BLAST of Cmc03g0072961 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.4e-21
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 69   DEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPI-RCKWIFKRKTK 128
            + +P+T   A+  +    W++A+ SE+++ I NHTWDLV  P  +  I  C+WIF +K  
Sbjct: 936  NSEPRT---AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFN 995

Query: 129  PNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIYNLLIHQMDVKTA 188
             +GS+ RYK RLV  GY Q+ G+DY +T+SPV K T+IR ++ +A   +  I Q+DV  A
Sbjct: 996  SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1053

[Close]

BLAST of Cmc03g0072961 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-16
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 68  IDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKWIFKRKTK 127
           I ++PK+   AL   G   W +A++ ELD+L  N TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 128 PNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALA 173
            +G+++R K RLV  G+ Q++GI + +TYSPV +  TIR ++ +A
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc03g0072961 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.9e-89
Identity = 169/188 (89.89%), Postives = 173/188 (92.02%), Query Frame = 0


Query: 1   MHDHENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVETRDEIDC 60
           MHD   P IVSE PVSETVDT NL CELE RRSKRQRTEKSFGPDFLSTFIVE RDEIDC
Sbjct: 766 MHD---PEIVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKW 120
           NFTNL+LIDEDPKTYQEALN V S MWKEAIKSELDSL MNHTW+LVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIYNLLIH 180
           IFKRKTKPNG IERYK RLVVVGYTQKQG+DYFDTYSPVTKITTIRALIALAAI+NLLIH
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIH 945

Query: 181 QMDVKTAF 189
           QMDVKTAF
Sbjct: 946 QMDVKTAF 950

[Close]

BLAST of Cmc03g0072961 vs. ExPASy TrEMBL
Match: A0A5A7TFH9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003410 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.6e-82
Identity = 156/168 (92.86%), Postives = 157/168 (93.45%), Query Frame = 0


Query: 1   MHDHENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVETRDEIDC 60
           MHD ENPSIVSE PVSETVDTSNLRCELELRRSKRQRTEKSFG DFLSTFIVE RDEID 
Sbjct: 496 MHDPENPSIVSEIPVSETVDTSNLRCELELRRSKRQRTEKSFGQDFLSTFIVERRDEIDR 555

Query: 61  NFTNLYLIDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQEALN V  SMWKEAI SELDSL+MNHTWDLVDLPM NKPIRCKW
Sbjct: 556 NFTNLYLIDEDPKTYQEALNSVDLSMWKEAINSELDSLVMNHTWDLVDLPMENKPIRCKW 615

Query: 121 IFKRKTKPNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 169
           IFKRKTKPNGSIERYK RLVVVGYTQKQGIDYFDTYSPVTKITTIRAL
Sbjct: 616 IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 663

[Close]

BLAST of Cmc03g0072961 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.3e-76
Identity = 145/166 (87.35%), Postives = 149/166 (89.76%), Query Frame = 0


Query: 1   MHDHENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVETRDEIDC 60
           MHD   P IVSE PVSE VDT NL CELE RRSKRQRTEKSFGPDFLSTFIVE RDEIDC
Sbjct: 766 MHD---PEIVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKW 120
           NFTNL+LI+ED KTYQEALN V S MWKEAIKSELDSL MNHTW+LVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIR 167
           IFKRKTKPNG IERYK RLVVVGYTQKQG+DYFDTYSPVTKITTIR
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc03g0072961 vs. ExPASy TrEMBL
Match: A0A5A7T8N6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001890 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 8.2e-76
Identity = 143/159 (89.94%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 1   MHDHENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVETRDEIDC 60
           MHD EN SIVSET VSE V+TSNLRCELELRRSKRQRTEKSF PDFLSTFIVE RDEID 
Sbjct: 494 MHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVERRDEIDF 553

Query: 61  NFTNLYLIDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQE LN V  SMWKEAIKSELDSL+MNHTWDLVDLPMGNKPIRC+W
Sbjct: 554 NFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCRW 613

Query: 121 IFKRKTKPNGSIERYKTRLVVVGYTQKQGIDYFDTYSPV 160
           IFKRKTKPNGS+ERYK RLVVVGYTQKQGIDYFDTYSPV
Sbjct: 614 IFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc03g0072961 vs. ExPASy TrEMBL
Match: A0A5D3BFX4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00190 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.8e-73
Identity = 138/145 (95.17%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MHDHENPSIVSETPVSETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVETRDEIDC 60
           MHD ENPSIVSETPVSETV+TSNLRCELEL RSKRQRTEKSFGPDFLSTFIVE RDEIDC
Sbjct: 350 MHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVERRDEIDC 409

Query: 61  NFTNLYLIDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQEALN V SSMWKEAIKSELDSL+MNHTWDLVDLPMGNKPIRCKW
Sbjct: 410 NFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 469

Query: 121 IFKRKTKPNGSIERYKTRLVVVGYT 146
           IFKRKTKPNGSIERYKTRLVVVGYT
Sbjct: 470 IFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc03g0072961 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-29
Identity = 53/119 (44.54%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 70  EDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKWIFKRKTKPN 129
           ++P TY EA  ++   +W  A+  E+ ++   HTW++  LP   KPI CKW++K K   +
Sbjct: 84  KEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 130 GSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIYNLLIHQMDVKTAF 189
           G+IERYK RLV  GYTQ++GID+ +T+SPV K+T+++ ++A++AIYN  +HQ+D+  AF
Sbjct: 144 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAF 199

[Close]

BLAST of Cmc03g0072961 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-17
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 68  IDEDPKTYQEALNYVGSSMWKEAIKSELDSLIMNHTWDLVDLPMGNKPIRCKWIFKRKTK 127
           I ++PK+   AL   G   W +A++ ELD+L  N TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 128 PNGSIERYKTRLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALA 173
            +G+++R K RLV  G+ Q++GI + +TYSPV +  TIR ++ +A
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc03g0072961 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	6.0e-89	89.89	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042080.1	5.4e-82	92.86	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK18022.1 ty1-cop...	[more]
KAA0036643.1	1.3e-75	87.35	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038001.1	1.7e-75	89.94	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ97996.1	7.8e-73	95.17	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0072961 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.7e-26	40.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	5.5e-21	42.98	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	9.4e-21	34.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	9.4e-21	42.15	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	1.4e-16	40.95	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc03g0072961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	2.9e-89	89.89	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TFH9	2.6e-82	92.86	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T166	6.3e-76	87.35	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T8N6	8.2e-76	89.94	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BFX4	3.8e-73	95.17	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc03g0072961 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.9e-29	44.54	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.0e-17	40.95	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 101..188 e-value: 9.4E-27 score: 94.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 70..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0072961.1	Cmc03g0072961.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding