Cmc03g0072891 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0072891
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	HIG1 domain-containing protein
Location	CMiso1.1chr03: 20257814 .. 20258675 (+)
RNA-Seq Expression	Cmc03g0072891
Synteny	Cmc03g0072891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTCTGTTGAACCAAGGGGCTGTCTATATATATATATATATAATGTTCTTAATTGATTCTCTCCTCATTGCTATCTTCTTCATCAAACTCATTAGTGTTTTTGTTCAGTAAACAGCAGCAGCAACAACGACAACAATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGTACTTATTATTTATTACTATTGATCTTCTTCGTCATTTCCCAATCTTTTTTCTTTACTCTCTTTCTAAATCTAATTAGTTTGTTTTTGGGTTATATATACATATAGGAGCTCTGTGGGCATCTGGGATGGGAGCATCGTTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGTTTAATACCTCCATCCACTCTTCTCTTCTCCACATTTAGTATTGTACAAAATAAAATAGTCCTCATAGTGTATGTCCAATCCCATAAGTATAGACCATTCTTTTTGTTATTCAAATTGAAAATGAACTATTAATTTTGGTAATTTGTTTGTAATTAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCGGCGGTCTACCACTACTACGACAACAAATTTGGCAACGACCGATCTGAAGCTCCTCCGGTTTCTCGGGGAGGGAAATGAAAGAAGGGATAAGTGGATGAGTCATTTTGTGTAAATTAAATTAAGGATAATTATGAAAGATTACTATTCCACATCCTCTTAAGTTTTAATTAATGCATACGTAGCCATTGAATAATGGCCTAAGTTCTAATTAGCTCGGTTCCTCTGTATTTTTCCAACTCTTAATTAAGTAGCATATATTTCACTGCCCAAAATTTCTA

mRNA sequence

TGCTCTGTTGAACCAAGGGGCTGTCTATATATATATATATATAATGTTCTTAATTGATTCTCTCCTCATTGCTATCTTCTTCATCAAACTCATTAGTGTTTTTGTTCAGTAAACAGCAGCAGCAACAACGACAACAATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGAGCTCTGTGGGCATCTGGGATGGGAGCATCGTTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCGGCGGTCTACCACTACTACGACAACAAATTTGGCAACGACCGATCTGAAGCTCCTCCGGTTTCTCGGGGAGGGAAATGAAAGAAGGGATAAGTGGATGAGTCATTTTGTGTAAATTAAATTAAGGATAATTATGAAAGATTACTATTCCACATCCTCTTAAGTTTTAATTAATGCATACGTAGCCATTGAATAATGGCCTAAGTTCTAATTAGCTCGGTTCCTCTGTATTTTTCCAACTCTTAATTAAGTAGCATATATTTCACTGCCCAAAATTTCTA

Coding sequence (CDS)

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGAGCTCTGTGGGCATCTGGGATGGGAGCATCGTTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCGGCGGTCTACCACTACTACGACAACAAATTTGGCAACGACCGATCTGAAGCTCCTCCGGTTTCTCGGGGAGGGAAATGA

Protein sequence

MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDNKFGNDRSEAPPVSRGGK

Homology

[Close]

BLAST of Cmc03g0072891 vs. NCBI nr
Match: KAA0052029.1 (respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04531.1 respiratory supercomplex factor 2-like protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 4.0e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 87
          AAVYHYYDNKFGNDRSEAPPVSRGGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of Cmc03g0072891 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 1.9e-37
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 87
          AAVYHYYDNK G DRSEAPPVS GGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of Cmc03g0072891 vs. NCBI nr
Match: XP_038886475.1 (uncharacterized protein LOC120076661 [Benincasa hispida])

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30
Identity = 74/86 (86.05%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVSEHKLTTIGALWASG+GASLAYTRSRT LKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQVWVSEHKLTTIGALWASGIGASLAYTRSRTLLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 87
          AAVYHYY++K    RSEA P S GGK
Sbjct: 61 AAVYHYYEDKLAGGRSEA-PASPGGK 85

[Close]

BLAST of Cmc03g0072891 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.0 bits (354), Expect = 4.9e-30
Identity = 70/79 (88.61%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASG+GASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFGNDRSEAP 80
          AAVYHYY+NK    RSEAP
Sbjct: 61 AAVYHYYENKSAGVRSEAP 79

[Close]

BLAST of Cmc03g0072891 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.0 bits (354), Expect = 4.9e-30
Identity = 70/79 (88.61%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASG+GASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFGNDRSEAP 80
          AAVYHYY+NK    RSEAP
Sbjct: 61 AAVYHYYENKSAGVRSEAP 79

[Close]

BLAST of Cmc03g0072891 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.9e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 87
          AAVYHYYDNKFGNDRSEAPPVSRGGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of Cmc03g0072891 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.0e-38
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 87
          AAVYHYYDNK G DRSEAPPVS GGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of Cmc03g0072891 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 60/72 (83.33%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1   MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+Q+WVSEHKLT+IG LWASG+GASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYDNKFG 73
           AAVYHYY+ + G
Sbjct: 98  AAVYHYYEKRLG 109

[Close]

BLAST of Cmc03g0072891 vs. ExPASy TrEMBL
Match: A0A5J5AU49 (HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.6e-26
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+Q+WVSEHKLT+IG LWAS +GASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEALQSWVSEHKLTSIGTLWASAIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKFGNDRSEAPP 81
          AA YHYY+ + G     A P
Sbjct: 61 AAAYHYYEKRAGEQGDNASP 80

[Close]

BLAST of Cmc03g0072891 vs. ExPASy TrEMBL
Match: A0A6A6N2Z1 (HIG1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_014009 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.8e-25
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA Q+WVSEHKLT+IGALWA+ +G SLAYTR++TPLKPSLRLIHARMHAQALTLAVLS 
Sbjct: 1  MEAFQSWVSEHKLTSIGALWATAVGGSLAYTRTKTPLKPSLRLIHARMHAQALTLAVLSS 60

Query: 61 AAVYHYYDNKFGNDRSEA 79
          AA+YHYY+ K G + + A
Sbjct: 61 AAIYHYYEKKQGENNAAA 78

[Close]

BLAST of Cmc03g0072891 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-18
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 2  EAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVS+HKL T+G LW SG+  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYDNK 71
          AV  YYD+K
Sbjct: 69 AVVEYYDHK 77

[Close]

BLAST of Cmc03g0072891 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 88.2 bits (217), Expect = 3.5e-18
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 4  IQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ EHKL T+G LW SG+  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYDNKFG 73
            YYD+K G
Sbjct: 71 VEYYDHKSG 79

The following BLAST results are available for this feature:

BLAST of Cmc03g0072891 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052029.1	4.0e-40	100.00	respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04...	[more]
XP_004138401.1	1.9e-37	95.35	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
XP_038886475.1	1.3e-30	86.05	uncharacterized protein LOC120076661 [Benincasa hispida]	[more]
KAG6578469.1	4.9e-30	88.61	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016034.1	4.9e-30	88.61	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cmc03g0072891 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc03g0072891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UEZ1	1.9e-40	100.00	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0K7T4	9.0e-38	95.35	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A7J7I509	1.6e-26	83.33	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A5J5AU49	4.6e-26	75.00	HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 ...	[more]
A0A6A6N2Z1	1.8e-25	75.64	HIG1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_014009 PE=...	[more]

BLAST of Cmc03g0072891 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	2.1e-18	59.42	Hypoxia-responsive family protein	[more]
AT5G27760.1	3.5e-18	57.97	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..71 e-value: 1.8E-6 score: 29.6
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..75
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 10..59 e-value: 4.3E-9 score: 36.5
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 20.701832
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0072891.1	Cmc03g0072891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0005746	mitochondrial respirasome