Cmc03g0072831 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0072831
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr03: 20208313 .. 20209365 (-)
RNA-Seq ExpressionCmc03g0072831
SyntenyCmc03g0072831
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTCTTCCCAATCTACTGCTCTTGCTGTCACCTCAGGTACCTCTTGGCTCCTTGACTCTACCTGTTGTAATCACATGACTTCTGACATTTCCTTATCATCATCTCATATTCCTGTTCAATCACTTCCCCCGATTCACTCTGCTGATGGTAATTTCATGTCTATTTCCCACATTGGCACCATTAATACACCCACCATTAAACTTTCCAACACCTACCATGTCCCAAATCTCACATTCAACCTAGCCTCTGTTGGTCAATTATGTGATCTCGGACTTACTATTATTTTTTCTTCTCATGGTTGTCAGGTTCAGGATTCTCAGATGGGACAAGTGATTGGTACGAGACGGAAGGTAGGTCGATTATTTGAGCTCACATCCCTCCAGCATTCTCCTGTGTTTCCAGCCATCTCTGCTCCCGTCACTGATAACACCCTATTTCAGTGGCATCTTCGTTTAGGTCATGCATCCTCTAATAAACTCCGTAGTTTAACTTCTACTGGTCTTTTAAGTAATGTTTCTCAGTTTAATACTTTTGATTGTTTACATTGCAAAATGGCGAAACAACCGGCTTTGTCCTTCCCTAAATCTGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTATGATATTTGGGGACCTGCTCCATGTCCTACTGTTAATGGTTATCGATATTTTGTGTTATTTATTGATGATTATTCTCGTTTTACTTGGATTTACTTTCTTAGAAATCGTTCCTCCTTATATCAAATATATGTTGATTTTGCAAATATGGTTCAAACACAATTTTCTAGCAAAATTAAAATTCTTCGCACTGATAATGCGATGGAATATAAGGACTCTCGTTTTCTTTCCTTCCTTGCACAACAAGGCACTTTGATTCAACGCTCATGTCCTCACACTTCCCAGCAAAATGAACGAGCGGAATGCAAACACCGTCACATTTTAGACTCTGTTTGTGCCCAACTCTTCTCTGGATCCTGTCCTGAAAAATTTTGGGGAAAGGCTGCCCTCACCTCTGTTTATGTCATCAATTGCCTTCCATCTTAG

mRNA sequence

ATGATCTCTTCCCAATCTACTGCTCTTGCTGTCACCTCAGGTACCTCTTGGCTCCTTGACTCTACCTGTTGTAATCACATGACTTCTGACATTTCCTTATCATCATCTCATATTCCTGTTCAATCACTTCCCCCGATTCACTCTGCTGATGGTAATTTCATGTCTATTTCCCACATTGGCACCATTAATACACCCACCATTAAACTTTCCAACACCTACCATGTCCCAAATCTCACATTCAACCTAGCCTCTGTTGGTCAATTATGTGATCTCGGACTTACTATTATTTTTTCTTCTCATGGTTGTCAGGTTCAGGATTCTCAGATGGGACAAGTGATTGGTACGAGACGGAAGGTAGGTCGATTATTTGAGCTCACATCCCTCCAGCATTCTCCTGTGTTTCCAGCCATCTCTGCTCCCGTCACTGATAACACCCTATTTCAGTGGCATCTTCGTTTAGGTCATGCATCCTCTAATAAACTCCGTAGTTTAACTTCTACTGGTCTTTTAAGTAATGTTTCTCAGTTTAATACTTTTGATTGTTTACATTGCAAAATGGCGAAACAACCGGCTTTGTCCTTCCCTAAATCTGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTATGATATTTGGGGACCTGCTCCATGTCCTACTGTTAATGGTTATCGATATTTTGTGTTATTTATTGATGATTATTCTCGTTTTACTTGGATTTACTTTCTTAGAAATCGTTCCTCCTTATATCAAATATATGTTGATTTTGCAAATATGGTTCAAACACAATTTTCTAGCAAAATTAAAATTCTTCGCACTGATAATGCGATGGAATATAAGGACTCTCGTTTTCTTTCCTTCCTTGCACAACAAGGCACTTTGATTCAACGCTCATGTCCTCACACTTCCCAGCAAAATGAACGAGCGGAATGCAAACACCGTCACATTTTAGACTCTGTTTGTGCCCAACTCTTCTCTGGATCCTGTCCTGAAAAATTTTGGGGAAAGGCTGCCCTCACCTCTGTTTATGTCATCAATTGCCTTCCATCTTAG

Coding sequence (CDS)

ATGATCTCTTCCCAATCTACTGCTCTTGCTGTCACCTCAGGTACCTCTTGGCTCCTTGACTCTACCTGTTGTAATCACATGACTTCTGACATTTCCTTATCATCATCTCATATTCCTGTTCAATCACTTCCCCCGATTCACTCTGCTGATGGTAATTTCATGTCTATTTCCCACATTGGCACCATTAATACACCCACCATTAAACTTTCCAACACCTACCATGTCCCAAATCTCACATTCAACCTAGCCTCTGTTGGTCAATTATGTGATCTCGGACTTACTATTATTTTTTCTTCTCATGGTTGTCAGGTTCAGGATTCTCAGATGGGACAAGTGATTGGTACGAGACGGAAGGTAGGTCGATTATTTGAGCTCACATCCCTCCAGCATTCTCCTGTGTTTCCAGCCATCTCTGCTCCCGTCACTGATAACACCCTATTTCAGTGGCATCTTCGTTTAGGTCATGCATCCTCTAATAAACTCCGTAGTTTAACTTCTACTGGTCTTTTAAGTAATGTTTCTCAGTTTAATACTTTTGATTGTTTACATTGCAAAATGGCGAAACAACCGGCTTTGTCCTTCCCTAAATCTGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTATGATATTTGGGGACCTGCTCCATGTCCTACTGTTAATGGTTATCGATATTTTGTGTTATTTATTGATGATTATTCTCGTTTTACTTGGATTTACTTTCTTAGAAATCGTTCCTCCTTATATCAAATATATGTTGATTTTGCAAATATGGTTCAAACACAATTTTCTAGCAAAATTAAAATTCTTCGCACTGATAATGCGATGGAATATAAGGACTCTCGTTTTCTTTCCTTCCTTGCACAACAAGGCACTTTGATTCAACGCTCATGTCCTCACACTTCCCAGCAAAATGAACGAGCGGAATGCAAACACCGTCACATTTTAGACTCTGTTTGTGCCCAACTCTTCTCTGGATCCTGTCCTGAAAAATTTTGGGGAAAGGCTGCCCTCACCTCTGTTTATGTCATCAATTGCCTTCCATCTTAG

Protein sequence

MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIGTINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS
Homology
[Close]
BLAST of Cmc03g0072831 vs. NCBI nr
Match: KAA0052024.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04536.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 716.8 bits (1849), Expect = 8.8e-203
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0 

Query: 1   MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 60
           MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG
Sbjct: 146 MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 205

Query: 61  TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 120
           TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG
Sbjct: 206 TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 265

Query: 121 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 180
           RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD
Sbjct: 266 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 325

Query: 181 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 240
           CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI
Sbjct: 326 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 385

Query: 241 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 300
           YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP
Sbjct: 386 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 445

Query: 301 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS
Sbjct: 446 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 495

[Close]
BLAST of Cmc03g0072831 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 675.2 bits (1741), Expect = 2.9e-190
Identity = 333/350 (95.14%), Postives = 338/350 (96.57%), Query Frame = 0 

Query: 1   MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 60
           +ISSQSTALAVT GTSWLLDS CCNHMTSDISL SSHIPVQSLPPIHSADGN MSISHIG
Sbjct: 309 VISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHIPVQSLPPIHSADGNSMSISHIG 368

Query: 61  TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 120
           T+NTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQ GQVIGT RKVG
Sbjct: 369 TVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVG 428

Query: 121 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 180
           RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLL+NVSQFNTFD
Sbjct: 429 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFD 488

Query: 181 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 240
           CLHCKMAKQPALSFPKSASLCDKPFGLIH DIWGPAPCPTVNGYRYFVLFIDDYSRFTWI
Sbjct: 489 CLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 548

Query: 241 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 300
           YFLRNRSSLYQIYVDFANM+QTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP
Sbjct: 549 YFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 608

Query: 301 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           HTSQQN RAE KHRHILDSV AQL SGSCPEKFWG+AALTSVYVIN LPS
Sbjct: 609 HTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPS 658

[Close]
BLAST of Cmc03g0072831 vs. NCBI nr
Match: KAA0065380.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 675.2 bits (1741), Expect = 2.9e-190
Identity = 333/350 (95.14%), Postives = 338/350 (96.57%), Query Frame = 0 

Query: 1   MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 60
           +ISSQSTALAVT GTSWLLDS CCNHMTSDISL SSHIPVQSLPPIHSADGN MSISHIG
Sbjct: 277 VISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHIPVQSLPPIHSADGNSMSISHIG 336

Query: 61  TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 120
           T+NTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQ GQVIGT RKVG
Sbjct: 337 TVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVG 396

Query: 121 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 180
           RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLL+NVSQFNTFD
Sbjct: 397 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFD 456

Query: 181 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 240
           CLHCKMAKQPALSFPKSASLCDKPFGLIH DIWGPAPCPTVNGYRYFVLFIDDYSRFTWI
Sbjct: 457 CLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 516

Query: 241 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 300
           YFLRNRSSLYQIYVDFANM+QTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP
Sbjct: 517 YFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 576

Query: 301 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           HTSQQN RAE KHRHILDSV AQL SGSCPEKFWG+AALTSVYVIN LPS
Sbjct: 577 HTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPS 626

[Close]
BLAST of Cmc03g0072831 vs. NCBI nr
Match: KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 675.2 bits (1741), Expect = 2.9e-190
Identity = 333/350 (95.14%), Postives = 338/350 (96.57%), Query Frame = 0 

Query: 1   MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 60
           +ISSQSTALAVT GTSWLLDS CCNHMTSDISL SSHIPVQSLPPIHSADGN MSISHIG
Sbjct: 309 VISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHIPVQSLPPIHSADGNSMSISHIG 368

Query: 61  TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 120
           T+NTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQ GQVIGT RKVG
Sbjct: 369 TVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVG 428

Query: 121 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 180
           RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLL+NVSQFNTFD
Sbjct: 429 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFD 488

Query: 181 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 240
           CLHCKMAKQPALSFPKSASLCDKPFGLIH DIWGPAPCPTVNGYRYFVLFIDDYSRFTWI
Sbjct: 489 CLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 548

Query: 241 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 300
           YFLRNRSSLYQIYVDFANM+QTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP
Sbjct: 549 YFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 608

Query: 301 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           HTSQQN RAE KHRHILDSV AQL SGSCPEKFWG+AALTSVYVIN LPS
Sbjct: 609 HTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPS 658

[Close]
BLAST of Cmc03g0072831 vs. NCBI nr
Match: TYK15021.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 507.3 bits (1305), Expect = 1.1e-139
Identity = 249/350 (71.14%), Postives = 291/350 (83.14%), Query Frame = 0 

Query: 1   MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 60
           +ISS S+ALAV+ G  WLLDS CCNHMTSD SL ++  P +SLPPI++ADGN M+I+H+G
Sbjct: 304 LISSPSSALAVSPGNRWLLDSGCCNHMTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMG 363

Query: 61  TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 120
           TINTP++ L +TY VPNLTFNL SVGQLCDLGLT+ FSS+GCQVQD Q GQ IGT RKVG
Sbjct: 364 TINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLTVSFSSNGCQVQDPQTGQTIGTGRKVG 423

Query: 121 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 180
           RLFEL SLQ     P+ISAPVTD+  +QWHLRLGHAS  KLR L S   L+++++F  F+
Sbjct: 424 RLFELLSLQVPS--PSISAPVTDSDTYQWHLRLGHASPEKLRHLISINNLNSITKFVPFN 483

Query: 181 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 240
           CL+CK+AKQPALSF KS S+CDKPF LIH DIWGPAP  TV+GYRY+VLFIDD+SRFTWI
Sbjct: 484 CLNCKLAKQPALSFSKSTSICDKPFDLIHSDIWGPAPTTTVHGYRYYVLFIDDFSRFTWI 543

Query: 241 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 300
           YFL++RS L + Y++FANM++TQFS  IK LRTDNA+EYKDS  LSFL+QQGTL+QRSCP
Sbjct: 544 YFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCP 603

Query: 301 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           HTSQQN RAE KHRHILDSV A L S SCPEKFWG+AALTSVY IN LPS
Sbjct: 604 HTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPS 651

[Close]
BLAST of Cmc03g0072831 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.6e-44
Identity = 109/344 (31.69%), Postives = 181/344 (52.62%), Query Frame = 0 

Query: 13  SGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIGTINTPT----IK 72
           S  +WLLDS   +H+TSD +  S H P      +  ADG+ + ISH G+ +  T    + 
Sbjct: 327 SSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLN 386

Query: 73  LSNTYHVPNLTFNLASVGQLCDL-GLTIIFSSHGCQVQDSQMGQVIGTRRKVGRLFELTS 132
           L N  +VPN+  NL SV +LC+  G+++ F     QV+D   G  +   +    L+E   
Sbjct: 387 LHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPI 446

Query: 133 LQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTF-DCLHCKM 192
               PV    ++P +  T   WH RLGH + + L S+ S   LS ++  + F  C  C +
Sbjct: 447 ASSQPV-SLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLI 506

Query: 193 AKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLRNR 252
            K   + F +S     +P   I+ D+W  +P  + + YRY+V+F+D ++R+TW+Y L+ +
Sbjct: 507 NKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQK 566

Query: 253 SSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQN 312
           S + + ++ F N+++ +F ++I    +DN  E+       + +Q G     S PHT + N
Sbjct: 567 SQVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHN 626

Query: 313 ERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
             +E KHRHI+++    L   S P+ +W  A   +VY+IN LP+
Sbjct: 627 GLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPT 666

[Close]
BLAST of Cmc03g0072831 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.6e-42
Identity = 112/351 (31.91%), Postives = 181/351 (51.57%), Query Frame = 0 

Query: 9   LAVTS---GTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIGTINTP 68
           LAV S     +WLLDS   +H+TSD +  S H P      +  ADG+ + I+H G+ + P
Sbjct: 299 LAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLP 358

Query: 69  T----IKLSNTYHVPNLTFNLASVGQLCDLG-LTIIFSSHGCQVQDSQMGQVIGTRRKVG 128
           T    + L+   +VPN+  NL SV +LC+   +++ F     QV+D   G  +   +   
Sbjct: 359 TSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKD 418

Query: 129 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVS-QFNTF 188
            L+E   +  S      ++P +  T   WH RLGH S   L S+ S   L  ++      
Sbjct: 419 ELYE-WPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLL 478

Query: 189 DCLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTW 248
            C  C + K   + F  S     KP   I+ D+W  +P  +++ YRY+V+F+D ++R+TW
Sbjct: 479 SCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTW 538

Query: 249 IYFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSC 308
           +Y L+ +S +   ++ F ++V+ +F ++I  L +DN  E+   R   +L+Q G     S 
Sbjct: 539 LYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR--DYLSQHGISHFTSP 598

Query: 309 PHTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           PHT + N  +E KHRHI++     L   S P+ +W  A   +VY+IN LP+
Sbjct: 599 PHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPT 645

[Close]
BLAST of Cmc03g0072831 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.5e-32
Identity = 94/341 (27.57%), Postives = 158/341 (46.33%), Query Frame = 0 

Query: 15  TSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIGTINTP-----TIKL 74
           + W++D+   +H T    L   ++       +   + ++  I+ IG I        T+ L
Sbjct: 292 SEWVVDTAASHHATPVRDLFCRYV-AGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVL 351

Query: 75  SNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVGRLFELTSLQ 134
            +  HVP+L  NL S   L   G    F++   ++    +    G  R  G L+   +  
Sbjct: 352 KDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVAR--GTLYRTNA-- 411

Query: 135 HSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFDCLHCKMAKQ 194
                  ++A   + ++  WH R+GH S   L+ L    L+S         C +C   KQ
Sbjct: 412 -EICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQ 471

Query: 195 PALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLRNRSSL 254
             +SF  S+        L++ D+ GP    ++ G +YFV FIDD SR  W+Y L+ +  +
Sbjct: 472 HRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQV 531

Query: 255 YQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQNERA 314
           +Q++  F  +V+ +   K+K LR+DN  EY    F  + +  G   +++ P T Q N  A
Sbjct: 532 FQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVA 591

Query: 315 ECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           E  +R I++ V + L     P+ FWG+A  T+ Y+IN  PS
Sbjct: 592 ERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPS 626

[Close]
BLAST of Cmc03g0072831 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 130.6 bits (327), Expect = 3.5e-29
Identity = 95/355 (26.76%), Postives = 158/355 (44.51%), Query Frame = 0 

Query: 10  AVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSA---DGNFMSISHIGTI---N 69
           +V     ++LDS   +H+ +D SL +  + V  +PP+  A    G F+  +  G +   N
Sbjct: 282 SVMDNCGFVLDSGASDHLINDESLYTDSVEV--VPPLKIAVAKQGEFIYATKRGIVRLRN 341

Query: 70  TPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVGRLF 129
              I L +         NL SV +L + G++I F   G  +  + +  V    +  G L 
Sbjct: 342 DHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVV----KNSGMLN 401

Query: 130 ELTSLQHSPVFPAISAPVTDNTLFQ-WHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD-- 189
            +  +     F A S        F+ WH R GH S  KL  +    + S+ S  N  +  
Sbjct: 402 NVPVIN----FQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELS 461

Query: 190 ---CLHCKMAKQPALSFP--KSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYS 249
              C  C   KQ  L F   K  +   +P  ++H D+ GP    T++   YFV+F+D ++
Sbjct: 462 CEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFT 521

Query: 250 RFTWIYFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLI 309
            +   Y ++ +S ++ ++ DF    +  F+ K+  L  DN  EY  +    F  ++G   
Sbjct: 522 HYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISY 581

Query: 310 QRSCPHTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
             + PHT Q N  +E   R I +     +      + FWG+A LT+ Y+IN +PS
Sbjct: 582 HLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPS 626

[Close]
BLAST of Cmc03g0072831 vs. ExPASy Swiss-Prot
Match: Q03434 (Transposon Ty1-ML2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-ML2 PE=3 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-15
Identity = 73/298 (24.50%), Postives = 129/298 (43.29%), Query Frame = 0 

Query: 74  HVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVGRLFELTS---LQH 133
           H PN+ ++L S+ +L  + +T  F+ +  +  D   G V+    K G  + ++    L  
Sbjct: 518 HTPNIAYDLLSLNELAAVDITACFTKNVLERSD---GTVLAPIVKYGDFYWVSKKYLLPS 577

Query: 134 SPVFPAISAPVTDNTLFQW-----HLRLGHASSNKLR-SLTSTGLL----SNVSQFNTFD 193
           +   P I+   T  +  ++     H  L HA++  +R SL +  +     S+V + +  D
Sbjct: 578 NISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAID 637

Query: 194 --CLHCKMAKQPALSFPKSASL----CDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDY 253
             C  C + K       K + L      +PF  +H DI+GP      +   YF+ F D+ 
Sbjct: 638 YQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDET 697

Query: 254 SRFTWIYFLRNR--SSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQG 313
           ++F W+Y L +R   S+  ++      ++ QF + + +++ D   EY +     FL + G
Sbjct: 698 TKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNG 757

Query: 314 TLIQRSCPHTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
                +    S+ +  AE  +R +LD    QL     P   W  A   S  V N L S
Sbjct: 758 ITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLAS 812

[Close]
BLAST of Cmc03g0072831 vs. ExPASy TrEMBL
Match: A0A5A7U9K0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001590 PE=4 SV=1)

HSP 1 Score: 716.8 bits (1849), Expect = 4.3e-203
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0 

Query: 1   MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 60
           MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG
Sbjct: 146 MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 205

Query: 61  TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 120
           TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG
Sbjct: 206 TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 265

Query: 121 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 180
           RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD
Sbjct: 266 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 325

Query: 181 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 240
           CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI
Sbjct: 326 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 385

Query: 241 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 300
           YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP
Sbjct: 386 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 445

Query: 301 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS
Sbjct: 446 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 495

[Close]
BLAST of Cmc03g0072831 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 675.2 bits (1741), Expect = 1.4e-190
Identity = 333/350 (95.14%), Postives = 338/350 (96.57%), Query Frame = 0 

Query: 1   MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 60
           +ISSQSTALAVT GTSWLLDS CCNHMTSDISL SSHIPVQSLPPIHSADGN MSISHIG
Sbjct: 309 VISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHIPVQSLPPIHSADGNSMSISHIG 368

Query: 61  TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 120
           T+NTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQ GQVIGT RKVG
Sbjct: 369 TVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVG 428

Query: 121 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 180
           RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLL+NVSQFNTFD
Sbjct: 429 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFD 488

Query: 181 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 240
           CLHCKMAKQPALSFPKSASLCDKPFGLIH DIWGPAPCPTVNGYRYFVLFIDDYSRFTWI
Sbjct: 489 CLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 548

Query: 241 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 300
           YFLRNRSSLYQIYVDFANM+QTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP
Sbjct: 549 YFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 608

Query: 301 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           HTSQQN RAE KHRHILDSV AQL SGSCPEKFWG+AALTSVYVIN LPS
Sbjct: 609 HTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPS 658

[Close]
BLAST of Cmc03g0072831 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 675.2 bits (1741), Expect = 1.4e-190
Identity = 333/350 (95.14%), Postives = 338/350 (96.57%), Query Frame = 0 

Query: 1   MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 60
           +ISSQSTALAVT GTSWLLDS CCNHMTSDISL SSHIPVQSLPPIHSADGN MSISHIG
Sbjct: 309 VISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHIPVQSLPPIHSADGNSMSISHIG 368

Query: 61  TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 120
           T+NTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQ GQVIGT RKVG
Sbjct: 369 TVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVG 428

Query: 121 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 180
           RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLL+NVSQFNTFD
Sbjct: 429 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFD 488

Query: 181 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 240
           CLHCKMAKQPALSFPKSASLCDKPFGLIH DIWGPAPCPTVNGYRYFVLFIDDYSRFTWI
Sbjct: 489 CLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 548

Query: 241 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 300
           YFLRNRSSLYQIYVDFANM+QTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP
Sbjct: 549 YFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 608

Query: 301 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           HTSQQN RAE KHRHILDSV AQL SGSCPEKFWG+AALTSVYVIN LPS
Sbjct: 609 HTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPS 658

[Close]
BLAST of Cmc03g0072831 vs. ExPASy TrEMBL
Match: A0A5A7VDW0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00430 PE=4 SV=1)

HSP 1 Score: 675.2 bits (1741), Expect = 1.4e-190
Identity = 333/350 (95.14%), Postives = 338/350 (96.57%), Query Frame = 0 

Query: 1   MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 60
           +ISSQSTALAVT GTSWLLDS CCNHMTSDISL SSHIPVQSLPPIHSADGN MSISHIG
Sbjct: 277 VISSQSTALAVTPGTSWLLDSACCNHMTSDISLLSSHIPVQSLPPIHSADGNSMSISHIG 336

Query: 61  TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 120
           T+NTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQ GQVIGT RKVG
Sbjct: 337 TVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVG 396

Query: 121 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 180
           RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLL+NVSQFNTFD
Sbjct: 397 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFD 456

Query: 181 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 240
           CLHCKMAKQPALSFPKSASLCDKPFGLIH DIWGPAPCPTVNGYRYFVLFIDDYSRFTWI
Sbjct: 457 CLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 516

Query: 241 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 300
           YFLRNRSSLYQIYVDFANM+QTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP
Sbjct: 517 YFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 576

Query: 301 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           HTSQQN RAE KHRHILDSV AQL SGSCPEKFWG+AALTSVYVIN LPS
Sbjct: 577 HTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPS 626

[Close]
BLAST of Cmc03g0072831 vs. ExPASy TrEMBL
Match: A0A5D3CT53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00560 PE=4 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 5.1e-140
Identity = 249/350 (71.14%), Postives = 291/350 (83.14%), Query Frame = 0 

Query: 1   MISSQSTALAVTSGTSWLLDSTCCNHMTSDISLSSSHIPVQSLPPIHSADGNFMSISHIG 60
           +ISS S+ALAV+ G  WLLDS CCNHMTSD SL ++  P +SLPPI++ADGN M+I+H+G
Sbjct: 304 LISSPSSALAVSPGNRWLLDSGCCNHMTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMG 363

Query: 61  TINTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQMGQVIGTRRKVG 120
           TINTP++ L +TY VPNLTFNL SVGQLCDLGLT+ FSS+GCQVQD Q GQ IGT RKVG
Sbjct: 364 TINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLTVSFSSNGCQVQDPQTGQTIGTGRKVG 423

Query: 121 RLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLSNVSQFNTFD 180
           RLFEL SLQ     P+ISAPVTD+  +QWHLRLGHAS  KLR L S   L+++++F  F+
Sbjct: 424 RLFELLSLQVPS--PSISAPVTDSDTYQWHLRLGHASPEKLRHLISINNLNSITKFVPFN 483

Query: 181 CLHCKMAKQPALSFPKSASLCDKPFGLIHYDIWGPAPCPTVNGYRYFVLFIDDYSRFTWI 240
           CL+CK+AKQPALSF KS S+CDKPF LIH DIWGPAP  TV+GYRY+VLFIDD+SRFTWI
Sbjct: 484 CLNCKLAKQPALSFSKSTSICDKPFDLIHSDIWGPAPTTTVHGYRYYVLFIDDFSRFTWI 543

Query: 241 YFLRNRSSLYQIYVDFANMVQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCP 300
           YFL++RS L + Y++FANM++TQFS  IK LRTDNA+EYKDS  LSFL+QQGTL+QRSCP
Sbjct: 544 YFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCP 603

Query: 301 HTSQQNERAECKHRHILDSVCAQLFSGSCPEKFWGKAALTSVYVINCLPS 351
           HTSQQN RAE KHRHILDSV A L S SCPEKFWG+AALTSVY IN LPS
Sbjct: 604 HTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPS 651

The following BLAST results are available for this feature:
BLAST of Cmc03g0072831 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052024.18.8e-203100.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0043149.12.9e-19095.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0065380.12.9e-19095.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0036574.12.9e-19095.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK15021.11.1e-13971.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of Cmc03g0072831 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94HW26.6e-4431.69Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.6e-4231.91Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109784.5e-3227.57Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041463.5e-2926.76Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q034341.3e-1524.50Transposon Ty1-ML2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ... [more]
BLAST of Cmc03g0072831 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U9K04.3e-203100.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DG181.4e-19095.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7SZ661.4e-19095.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7VDW01.4e-19095.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3CT535.1e-14071.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of Cmc03g0072831 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 135..189
e-value: 3.5E-10
score: 39.6
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 203..302
e-value: 2.2E-13
score: 50.4
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 200..350
score: 14.987515
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 199..350
e-value: 1.2E-27
score: 98.5
NoneNo IPR availablePANTHERPTHR11439:SF324RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 110..308
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 110..308
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 202..349

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0072831.1Cmc03g0072831.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding