Cmc03g0072741 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0072741
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Zinc finger MYM-type protein
Location	CMiso1.1chr03: 20108047 .. 20108316 (+)
RNA-Seq Expression	Cmc03g0072741
Synteny	Cmc03g0072741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGTTATGAACGGAGATAAGGTCTACCCATTAGTTTATCAGTTGCTCACATTAGCGTTGATTTTACCAGTTGCAACAGCTACTGTAGAGAGAATATTTTCTGCTATGAATATTGTGAAGACTCGACTGCGCAATCGAATGAAAGATCAATGGATGAATGATTGTCTTATAACTTATATTGAGAAAGATTTATTGGATAAGTTAGATAATAAACTTATCATGGATCAATTTCAAAACATGGAAATTCGTAGAGGACAATTAAATTAA

mRNA sequence

ATGGTCGTTATGAACGGAGATAAGGTCTACCCATTAGTTTATCAGTTGCTCACATTAGCGTTGATTTTACCAGTTGCAACAGCTACTGTAGAGAGAATATTTTCTGCTATGAATATTGTGAAGACTCGACTGCGCAATCGAATGAAAGATCAATGGATGAATGATTGTCTTATAACTTATATTGAGAAAGATTTATTGGATAAGTTAGATAATAAACTTATCATGGATCAATTTCAAAACATGGAAATTCGTAGAGGACAATTAAATTAA

Coding sequence (CDS)

ATGGTCGTTATGAACGGAGATAAGGTCTACCCATTAGTTTATCAGTTGCTCACATTAGCGTTGATTTTACCAGTTGCAACAGCTACTGTAGAGAGAATATTTTCTGCTATGAATATTGTGAAGACTCGACTGCGCAATCGAATGAAAGATCAATGGATGAATGATTGTCTTATAACTTATATTGAGAAAGATTTATTGGATAAGTTAGATAATAAACTTATCATGGATCAATTTCAAAACATGGAAATTCGTAGAGGACAATTAAATTAA

Protein sequence

MVVMNGDKVYPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITYIEKDLLDKLDNKLIMDQFQNMEIRRGQLN

Homology

[Close]

BLAST of Cmc03g0072741 vs. NCBI nr
Match: KAA0066112.1 (Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa] >TYK15151.1 Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 72/88 (81.82%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   MVVMNGDKVYPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITY 60
           MVV   DKVY LVYQLLTLALILPVAT T+ER FSAMN+VKTRLRNR+ DQWMNDCLI Y
Sbjct: 65  MVVTKRDKVYLLVYQLLTLALILPVATVTIERTFSAMNVVKTRLRNRIGDQWMNDCLIAY 124

Query: 61  IEKDLLDKLDNKLIMDQFQNMEIRRGQL 89
           IEKDLLDKLDNKLIMD+FQ M+ R+GQL
Sbjct: 125 IEKDLLDKLDNKLIMDRFQRMKTRKGQL 152

[Close]

BLAST of Cmc03g0072741 vs. NCBI nr
Match: XP_008449194.1 (PREDICTED: uncharacterized protein LOC103491145 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 5.2e-27
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1   MVVMNGDKVYPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITY 60
           MV+   DKVYPLVY+LLTLALILPV TATV+RIFSAM+I+KT+ R RMKDQWMNDCL+ Y
Sbjct: 226 MVITAKDKVYPLVYRLLTLALILPVTTATVKRIFSAMSIIKTQFRTRMKDQWMNDCLVAY 285

Query: 61  IEKDLLDKLDNKLIMDQFQNMEIRRGQL 89
           IE+DL DK+DN+ IM +FQNM+ RRGQL
Sbjct: 286 IERDLFDKIDNEAIMYRFQNMKSRRGQL 313

[Close]

BLAST of Cmc03g0072741 vs. NCBI nr
Match: XP_021829887.1 (uncharacterized protein LOC110770113 [Prunus avium])

HSP 1 Score: 127.1 bits (318), Expect = 7.6e-26
Identity = 62/88 (70.45%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1   MVVMNGDKVYPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITY 60
           MV  N DK+YPLVY LLTLALILPVATA+VER+FSAMNIVK RLRNR+ D WMNDCL+ Y
Sbjct: 329 MVETNKDKIYPLVYLLLTLALILPVATASVERVFSAMNIVKNRLRNRIGDLWMNDCLVAY 388

Query: 61  IEKDLLDKLDNKLIMDQFQNMEIRRGQL 89
           IEKD+ + +D++++M +FQNM+ RRGQL
Sbjct: 389 IEKDIFNSIDDEVVMQRFQNMKTRRGQL 416

[Close]

BLAST of Cmc03g0072741 vs. NCBI nr
Match: XP_008245511.1 (PREDICTED: zinc finger MYM-type protein 1-like [Prunus mume])

HSP 1 Score: 124.8 bits (312), Expect = 3.8e-25
Identity = 61/88 (69.32%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 1   MVVMNGDKVYPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITY 60
           MV    D++YPLVY LLTLALILPVATA+VER+FSAMNIVK RLRNRM D WMNDCL+ Y
Sbjct: 701 MVETKKDQIYPLVYLLLTLALILPVATASVERVFSAMNIVKNRLRNRMGDLWMNDCLVAY 760

Query: 61  IEKDLLDKLDNKLIMDQFQNMEIRRGQL 89
           IEKD+ + +D++++M +FQNM+ RRGQL
Sbjct: 761 IEKDIFNSIDDEVVMQRFQNMKTRRGQL 788

[Close]

BLAST of Cmc03g0072741 vs. NCBI nr
Match: XP_028062659.1 (zinc finger MYM-type protein 1-like [Camellia sinensis])

HSP 1 Score: 122.1 bits (305), Expect = 2.4e-24
Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1   MVVMNGDKVYPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITY 60
           M+    DKVYPLVY LLTLALILPVAT TVER+FSAMNIVK RLRNR+ D+WMND LI Y
Sbjct: 404 MIETGRDKVYPLVYLLLTLALILPVATVTVERVFSAMNIVKNRLRNRIGDEWMNDSLIVY 463

Query: 61  IEKDLLDKLDNKLIMDQFQNMEIRRGQL 89
           IE+D+ D +DN  IM++FQ M+ RRGQL
Sbjct: 464 IERDIFDGIDNDTIMERFQKMKTRRGQL 491

[Close]

BLAST of Cmc03g0072741 vs. ExPASy TrEMBL
Match: A0A5A7VCQ2 (Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00160 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.5e-30
Identity = 72/88 (81.82%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   MVVMNGDKVYPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITY 60
           MVV   DKVY LVYQLLTLALILPVAT T+ER FSAMN+VKTRLRNR+ DQWMNDCLI Y
Sbjct: 65  MVVTKRDKVYLLVYQLLTLALILPVATVTIERTFSAMNVVKTRLRNRIGDQWMNDCLIAY 124

Query: 61  IEKDLLDKLDNKLIMDQFQNMEIRRGQL 89
           IEKDLLDKLDNKLIMD+FQ M+ R+GQL
Sbjct: 125 IEKDLLDKLDNKLIMDRFQRMKTRKGQL 152

[Close]

BLAST of Cmc03g0072741 vs. ExPASy TrEMBL
Match: A0A1S3BM43 (uncharacterized protein LOC103491145 OS=Cucumis melo OX=3656 GN=LOC103491145 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1   MVVMNGDKVYPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITY 60
           MV+   DKVYPLVY+LLTLALILPV TATV+RIFSAM+I+KT+ R RMKDQWMNDCL+ Y
Sbjct: 226 MVITAKDKVYPLVYRLLTLALILPVTTATVKRIFSAMSIIKTQFRTRMKDQWMNDCLVAY 285

Query: 61  IEKDLLDKLDNKLIMDQFQNMEIRRGQL 89
           IE+DL DK+DN+ IM +FQNM+ RRGQL
Sbjct: 286 IERDLFDKIDNEAIMYRFQNMKSRRGQL 313

[Close]

BLAST of Cmc03g0072741 vs. ExPASy TrEMBL
Match: A0A6P5TRY7 (uncharacterized protein LOC110770113 OS=Prunus avium OX=42229 GN=LOC110770113 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.7e-26
Identity = 62/88 (70.45%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1   MVVMNGDKVYPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITY 60
           MV  N DK+YPLVY LLTLALILPVATA+VER+FSAMNIVK RLRNR+ D WMNDCL+ Y
Sbjct: 329 MVETNKDKIYPLVYLLLTLALILPVATASVERVFSAMNIVKNRLRNRIGDLWMNDCLVAY 388

Query: 61  IEKDLLDKLDNKLIMDQFQNMEIRRGQL 89
           IEKD+ + +D++++M +FQNM+ RRGQL
Sbjct: 389 IEKDIFNSIDDEVVMQRFQNMKTRRGQL 416

[Close]

BLAST of Cmc03g0072741 vs. ExPASy TrEMBL
Match: A0A5D3BDJ0 (Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001870 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1   MVVMNGDKVYPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITY 60
           MVV   DKV PLVY+LLTLALIL VATATVER FSAMNIVKT+L NRM DQWMNDCLI Y
Sbjct: 65  MVVTKRDKVNPLVYRLLTLALILSVATATVERTFSAMNIVKTQLHNRMGDQWMNDCLIAY 124

Query: 61  IEKDLLDKLDNKLIMD 77
           IEKDLLDKLDNKLIMD
Sbjct: 125 IEKDLLDKLDNKLIMD 140

[Close]

BLAST of Cmc03g0072741 vs. ExPASy TrEMBL
Match: A0A6P5TKH2 (zinc finger MYM-type protein 1-like OS=Prunus avium OX=42229 GN=LOC110768262 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 61/88 (69.32%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1   MVVMNGDKVYPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITY 60
           MV  N DK+YPLVY LLTLALIL VATA+VER+FSAMNIVK RLRNRM D WMND L+ Y
Sbjct: 377 MVETNKDKIYPLVYLLLTLALILSVATASVERVFSAMNIVKNRLRNRMGDLWMNDSLVAY 436

Query: 61  IEKDLLDKLDNKLIMDQFQNMEIRRGQL 89
           IEKD+ + +D++++M +FQNM+ RRGQL
Sbjct: 437 IEKDIFNSIDDEVVMQRFQNMKTRRGQL 464

[Close]

BLAST of Cmc03g0072741 vs. TAIR 10
Match: AT1G19260.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 87.8 bits (216), Expect = 4.7e-18
Identity = 45/79 (56.96%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 10  YPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITYIEKDLLDKL 69
           +PLVY+LL ++LILPVATATVER FSAMN VKT LRNR+ D +++DCL+ +IEK  L+ +
Sbjct: 691 HPLVYRLLKVSLILPVATATVERCFSAMNFVKTTLRNRIGDMFLSDCLVCFIEKQALNTV 750

Query: 70  DNKLIMDQFQNMEIRRGQL 89
            N+ ++ +FQ+M  RR  L
Sbjct: 751 TNESVIKRFQDMSERRVHL 769

[Close]

BLAST of Cmc03g0072741 vs. TAIR 10
Match: AT3G29765.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-17
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 10  YPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITYIEKDLLDKL 69
           +PLVY+LL L+LILPVATATV R FSAMN VKT LRNR  D +++DCL+ +IEK +L+ +
Sbjct: 458 HPLVYRLLKLSLILPVATATVVRCFSAMNFVKTTLRNRFGDVFLSDCLVCFIEKQVLNTV 517

Query: 70  DNKLIMDQFQNMEIRRGQL 89
            N+ ++ +FQ+M  RR  L
Sbjct: 518 TNESVIKRFQDMSERRVHL 536

[Close]

BLAST of Cmc03g0072741 vs. TAIR 10
Match: AT2G06541.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 74.7 bits (182), Expect = 4.2e-14
Identity = 38/75 (50.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 10  YPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITYIEKDLLDKL 69
           +P VY+LL + L LP+ATATVER FSA  +VKT LRNR+ DQ++ND ++  ++++L D +
Sbjct: 515 HPQVYRLLKVVLTLPIATATVERCFSA-TVVKTTLRNRISDQFLNDYVVCLVKRELFDTV 574

Query: 70  DNKLIMDQFQNMEIR 85
            NK+++ +FQ+ME R
Sbjct: 575 INKVVIKRFQSMENR 588

[Close]

BLAST of Cmc03g0072741 vs. TAIR 10
Match: AT2G06541.2 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 74.7 bits (182), Expect = 4.2e-14
Identity = 38/75 (50.67%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 10  YPLVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKDQWMNDCLITYIEKDLLDKL 69
           +P VY+LL + L LP+ATATVER FSA  +VKT LRNR+ DQ++ND ++  ++++L D +
Sbjct: 487 HPQVYRLLKVVLTLPIATATVERCFSA-TVVKTTLRNRISDQFLNDYVVCLVKRELFDTV 546

Query: 70  DNKLIMDQFQNMEIR 85
            NK+++ +FQ+ME R
Sbjct: 547 INKVVIKRFQSMENR 560

[Close]

BLAST of Cmc03g0072741 vs. TAIR 10
Match: AT3G30235.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.0e-04
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 12  LVYQLLTLALILPVATATVERIFSAMNIVKTRLRNRMKD 51
           ++ +LL L LIL VATATVER FSAM IVKT  RNR+ D
Sbjct: 130 VLMRLLKLILILHVATATVERCFSAMKIVKTDRRNRIGD 168

The following BLAST results are available for this feature:

BLAST of Cmc03g0072741 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066112.1	1.1e-29	81.82	Dimer_Tnp_hAT domain-containing protein [Cucumis melo var. makuwa] >TYK15151.1 D...	[more]
XP_008449194.1	5.2e-27	73.86	PREDICTED: uncharacterized protein LOC103491145 [Cucumis melo]	[more]
XP_021829887.1	7.6e-26	70.45	uncharacterized protein LOC110770113 [Prunus avium]	[more]
XP_008245511.1	3.8e-25	69.32	PREDICTED: zinc finger MYM-type protein 1-like [Prunus mume]	[more]
XP_028062659.1	2.4e-24	70.45	zinc finger MYM-type protein 1-like [Camellia sinensis]	[more]

BLAST of Cmc03g0072741 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc03g0072741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCQ2	5.5e-30	81.82	Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BM43	2.5e-27	73.86	uncharacterized protein LOC103491145 OS=Cucumis melo OX=3656 GN=LOC103491145 PE=...	[more]
A0A6P5TRY7	3.7e-26	70.45	uncharacterized protein LOC110770113 OS=Prunus avium OX=42229 GN=LOC110770113 PE...	[more]
A0A5D3BDJ0	1.5e-24	85.53	Dimer_Tnp_hAT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6P5TKH2	1.5e-24	69.32	zinc finger MYM-type protein 1-like OS=Prunus avium OX=42229 GN=LOC110768262 PE=...	[more]

BLAST of Cmc03g0072741 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19260.1	4.7e-18	56.96	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT3G29765.1	1.8e-17	56.96	General transcription factor 2-related zinc finger protein	[more]
AT2G06541.1	4.2e-14	50.67	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT2G06541.2	4.2e-14	50.67	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT3G30235.1	1.0e-04	66.67	General transcription factor 2-related zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 9..65 e-value: 2.8E-10 score: 39.8
None	No IPR available	PANTHER	PTHR11697:SF107	TRANSCRIPTION FACTOR-LIKE ZINC FINGER PROTEIN, PUTATIVE-RELATED	coord: 10..79
None	No IPR available	PANTHER	PTHR11697	GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN	coord: 10..79
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 7..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0072741.1	Cmc03g0072741.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0008381	mechanosensitive ion channel activity
molecular_function	GO:0046983	protein dimerization activity