Cmc03g0072671 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0072671
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr03: 20047116 .. 20047490 (+)
RNA-Seq Expression	Cmc03g0072671
Synteny	Cmc03g0072671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGAGAAAACTGCCTTTCTAAATGGAAATTTAGACGAAGAAGTGTTCATGGATCAACCAGAAGATTTTATGATTGAAGTAAAGGAACATATGGTGTGTAAATTAAAGAGGTTAATATATGGACTTAAACAAGCTTCCAGACAGTGGTATCTTAAGTTTAATGATACCATCACATCTTTTAGTTTTATAGAAAACATCGTTGATCGATGTATATACCTAAAGATCAGTGGGAGTAAGTTTATAATTCTTGTTCTATATGTTGATGACATCTTGCTTGCTACAAATGACTTTGGTTTATTATGTCAAACGTCAAACCAAAGAATTTCTTTCTAA

mRNA sequence

ATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGAGAAAACTGCCTTTCTAAATGGAAATTTAGACGAAGAAGTGTTCATGGATCAACCAGAAGATTTTATGATTGAAGTAAAGGAACATATGGTGTGTAAATTAAAGAGGTTAATATATGGACTTAAACAAGCTTCCAGACAGTGGTATCTTAAGTTTAATGATACCATCACATCTTTTAGTTTTATAGAAAACATCGTTGATCGATGTATATACCTAAAGATCAGTGGGAGTAAGTTTATAATTCTTGTTCTATATGTTGATGACATCTTGCTTGCTACAAATGACTTTGGTTTATTATGTCAAACGTCAAACCAAAGAATTTCTTTCTAA

Coding sequence (CDS)

ATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGAGAAAACTGCCTTTCTAAATGGAAATTTAGACGAAGAAGTGTTCATGGATCAACCAGAAGATTTTATGATTGAAGTAAAGGAACATATGGTGTGTAAATTAAAGAGGTTAATATATGGACTTAAACAAGCTTCCAGACAGTGGTATCTTAAGTTTAATGATACCATCACATCTTTTAGTTTTATAGAAAACATCGTTGATCGATGTATATACCTAAAGATCAGTGGGAGTAAGTTTATAATTCTTGTTCTATATGTTGATGACATCTTGCTTGCTACAAATGACTTTGGTTTATTATGTCAAACGTCAAACCAAAGAATTTCTTTCTAA

Protein sequence

MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQASRQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTSNQRISF

Homology

[Close]

BLAST of Cmc03g0072671 vs. NCBI nr
Match: KAA0052755.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 9.2e-54
Identity = 110/117 (94.02%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
           MALVAHYDLELHQMD KTAFLNGNLDEEVFMDQPE FM+E KEHMVCKLKR IYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
           RQWYLKFNDTITSF F ENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 735

[Close]

BLAST of Cmc03g0072671 vs. NCBI nr
Match: TYK04201.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 9.2e-54
Identity = 110/117 (94.02%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
           MALVAHYDLELHQMD KTAFLNGNLDEEVFMDQPE FM+E KEHMVCKLKR IYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
           RQWYLKFNDTITSF F ENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 735

[Close]

BLAST of Cmc03g0072671 vs. NCBI nr
Match: TYK00088.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 1.0e-52
Identity = 107/117 (91.45%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
           MALVAHYDLELHQMD KTAF+NGNLDE++FMDQPE FM+E KEHMVCKLKR IYGLKQAS
Sbjct: 72  MALVAHYDLELHQMDVKTAFINGNLDEKLFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 131

Query: 61  RQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
           RQWYLKFNDTITSF F ENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT
Sbjct: 132 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 188

[Close]

BLAST of Cmc03g0072671 vs. NCBI nr
Match: KAA0033349.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 4.3e-51
Identity = 107/117 (91.45%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
           MALVAHYDLELHQMD KTAFLNGNLDEEVFMDQPE FM+E KEHMVCKLKR IYGLKQAS
Sbjct: 41  MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 100

Query: 61  RQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
           RQ YLKFNDTITSF F ENIVDRCIYLKISGSKFI+LVLYVDDILLAT DFGLLCQT
Sbjct: 101 RQCYLKFNDTITSFGFKENIVDRCIYLKISGSKFIVLVLYVDDILLATIDFGLLCQT 157

[Close]

BLAST of Cmc03g0072671 vs. NCBI nr
Match: RYE20331.1 (hypothetical protein EOP45_11235, partial [Sphingobacteriaceae bacterium])

HSP 1 Score: 208.4 bits (529), Expect = 3.6e-50
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
           MA+VAHYDLELHQMD KTAFLNGNLDEEVFMDQPE F+++ KEHMVCKLK+ IYGLKQAS
Sbjct: 61  MAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQAS 120

Query: 61  RQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
           RQWYLKFNDT+TSF F ENIVDRCIYLKISGSKFIILVLYVDDILLATND GLL QT
Sbjct: 121 RQWYLKFNDTVTSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDLGLLRQT 177

[Close]

BLAST of Cmc03g0072671 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.0e-28
Identity = 59/117 (50.43%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1    MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
            ++L A  DLE+ Q+D KTAFL+G+L+EE++M+QPE F +  K+HMVCKL + +YGLKQA 
Sbjct: 908  LSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAP 967

Query: 61   RQWYLKFNDTITSFSFIENIVDRCIYLK-ISGSKFIILVLYVDDILLATNDFGLLCQ 117
            RQWY+KF+  + S ++++   D C+Y K  S + FIIL+LYVDD+L+   D GL+ +
Sbjct: 968  RQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAK 1024

[Close]

BLAST of Cmc03g0072671 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-20
Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 1    MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
            ++LV  Y+L++HQMD KTAFLNG L EE++M  P+   I      VCKL + IYGLKQA+
Sbjct: 988  LSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAA 1047

Query: 61   RQWYLKFNDTITSFSFIENIVDRCIYLKISG--SKFIILVLYVDDILLATND 111
            R W+  F   +    F+ + VDRCIY+   G  ++ I ++LYVDD+++AT D
Sbjct: 1048 RCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGD 1097

[Close]

BLAST of Cmc03g0072671 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-16
Identity = 39/107 (36.45%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 11   LHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQASRQWYLKFNDT 70
            + Q+D   AFL G L ++V+M QP  F+ + + + VCKL++ +YGLKQA R WY++  + 
Sbjct: 1061 IRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNY 1120

Query: 71   ITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
            + +  F+ ++ D  +++   G   + +++YVDDIL+  ND  LL  T
Sbjct: 1121 LLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNT 1167

[Close]

BLAST of Cmc03g0072671 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-16
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 11   LHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQASRQWYLKFNDT 70
            + Q+D   AFL G L +EV+M QP  F+ + +   VC+L++ IYGLKQA R WY++    
Sbjct: 1044 IRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTY 1103

Query: 71   ITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
            + +  F+ +I D  +++   G   I +++YVDDIL+  ND  LL  T
Sbjct: 1104 LLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHT 1150

[Close]

BLAST of Cmc03g0072671 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-08
Identity = 33/94 (35.11%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 14  MDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQASRQWYLKFNDTITS 73
           MD  TAFLN  +DE +++ QP  F+ E     V +L   +YGLKQA   W    N+T+  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 74  FSFIENIVDRCIYLKISGSKFIILVLYVDDILLA 108
             F  +  +  +Y + +    I + +YVDD+L+A
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVA 94

[Close]

BLAST of Cmc03g0072671 vs. ExPASy TrEMBL
Match: A0A5A7UG95 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055G00040 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.4e-54
Identity = 110/117 (94.02%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
           MALVAHYDLELHQMD KTAFLNGNLDEEVFMDQPE FM+E KEHMVCKLKR IYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
           RQWYLKFNDTITSF F ENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 735

[Close]

BLAST of Cmc03g0072671 vs. ExPASy TrEMBL
Match: A0A5D3BWW5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00300 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.4e-54
Identity = 110/117 (94.02%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
           MALVAHYDLELHQMD KTAFLNGNLDEEVFMDQPE FM+E KEHMVCKLKR IYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
           RQWYLKFNDTITSF F ENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 735

[Close]

BLAST of Cmc03g0072671 vs. ExPASy TrEMBL
Match: A0A5D3BLU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00400 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.9e-53
Identity = 107/117 (91.45%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
           MALVAHYDLELHQMD KTAF+NGNLDE++FMDQPE FM+E KEHMVCKLKR IYGLKQAS
Sbjct: 72  MALVAHYDLELHQMDVKTAFINGNLDEKLFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 131

Query: 61  RQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
           RQWYLKFNDTITSF F ENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT
Sbjct: 132 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 188

[Close]

BLAST of Cmc03g0072671 vs. ExPASy TrEMBL
Match: A0A5A7SVZ5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001720 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.1e-51
Identity = 107/117 (91.45%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
           MALVAHYDLELHQMD KTAFLNGNLDEEVFMDQPE FM+E KEHMVCKLKR IYGLKQAS
Sbjct: 41  MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 100

Query: 61  RQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
           RQ YLKFNDTITSF F ENIVDRCIYLKISGSKFI+LVLYVDDILLAT DFGLLCQT
Sbjct: 101 RQCYLKFNDTITSFGFKENIVDRCIYLKISGSKFIVLVLYVDDILLATIDFGLLCQT 157

[Close]

BLAST of Cmc03g0072671 vs. ExPASy TrEMBL
Match: A0A4V1T029 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_11235 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMIEVKEHMVCKLKRLIYGLKQAS 60
           MA+VAHYDLELHQMD KTAFLNGNLDEEVFMDQPE F+++ KEHMVCKLK+ IYGLKQAS
Sbjct: 61  MAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQAS 120

Query: 61  RQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQT 118
           RQWYLKFNDT+TSF F ENIVDRCIYLKISGSKFIILVLYVDDILLATND GLL QT
Sbjct: 121 RQWYLKFNDTVTSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDLGLLRQT 177

[Close]

BLAST of Cmc03g0072671 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 104.0 bits (258), Expect = 8.9e-23
Identity = 51/124 (41.13%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 1   MALVAHYDLELHQMDEKTAFLNGNLDEEVFMDQPEDFMI----EVKEHMVCKLKRLIYGL 60
           +A+ A Y+  LHQ+D   AFLNG+LDEE++M  P  +       +  + VC LK+ IYGL
Sbjct: 180 LAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGL 239

Query: 61  KQASRQWYLKFNDTITSFSFIENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQ 120
           KQASRQW+LKF+ T+  F F+++  D   +LKI+ + F+ +++YVDDI++ +N+   + +
Sbjct: 240 KQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDE 299

The following BLAST results are available for this feature:

BLAST of Cmc03g0072671 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052755.1	9.2e-54	94.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04201.1	9.2e-54	94.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK00088.1	1.0e-52	91.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0033349.1	4.3e-51	91.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
RYE20331.1	3.6e-50	88.03	hypothetical protein EOP45_11235, partial [Sphingobacteriaceae bacterium]	[more]

BLAST of Cmc03g0072671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	9.0e-28	50.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.4e-20	46.43	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.1e-16	36.45	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.7e-16	39.25	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	2.7e-08	35.11	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc03g0072671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UG95	4.4e-54	94.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BWW5	4.4e-54	94.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BLU0	4.9e-53	91.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SVZ5	2.1e-51	91.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A4V1T029	1.7e-50	88.03	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Sph...	[more]

BLAST of Cmc03g0072671 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.9e-23	41.13	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..114 e-value: 8.0E-30 score: 104.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 3..116
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 11..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0072671.1	Cmc03g0072671.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding