Cmc03g0072261 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0072261
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr03: 19261171 .. 19262198 (-)
RNA-Seq Expression	Cmc03g0072261
Synteny	Cmc03g0072261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTTAGCTAAAGCAGTGGGAGATTTGAAGTTGTTTTTTAATGATAGATATATCTTACTCAAGAATGTCTTGTATGCACCTCAAATGAAGAGAAATTTGATATTCATCTTTTGTTTATTAGAACATATGTATAAAATATCTTTTGAAATTAATGAAGCGTTCATTTTAAGAAAAGGTATTCACATTTGTTCTGCAATACTTGAAAACAACTTATACAAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTGAGATATTTAGAACAGCTAAAACTCAGTATAAAAGACAAAAGGTTTCTTCCAATGCCTTCTTATGGCACTTAAGACTCGGTCACATTAATCTCAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTCCTTGTGATTCCTGTCTTGAAGAAAAAATGATCAAAAGATCTTTTACTGAAAAAGGTCTTAGAGCCAAAACACCTTTGGAGCTCGTACATTCGGACCTTTGTGGATCAATGAATGTCAAGGCTAGTTTCATTGATGATTATTCGAGGTATGGTCATGTTTACCTAATTCATAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAAGCTAAAGTTGAAAATGAATCAGGTAAAACAATAAAGACATTTCGATCAGATCAAGGTGGAGAGTATATGGACTTGCGATTTCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAATGGTGTATCAGAAAGAAGAAACCGAACTTTGTTGGACATGGTTCTCTCTATGATGAGTTTTCTTAGTTGCCAGATTCTTTTTAGGGATATGCTTTAGAAACAACTATCTATATTTTGAACAACGTTCCCTCTAAAAGTGTTTTTGAAATACCTTATGAGTTATGGAAAGGACGTAAATGTAGTTTACGTCACTTTAGAATTTGGGGATGTCCAACACACGTGTTAGTGCAAAACCCTAAAAAATTTGAACGTCGTTAA

mRNA sequence

ATGGTCTTAGCTAAAGCAGTGGGAGATTTGAAGTTGTTTTTTAATGATAGATATATCTTACTCAAGAATGTCTTGTATGCACCTCAAATGAAGAGAAATTTGATATTCATCTTTTGTTTATTAGAACATATGTATAAAATATCTTTTGAAATTAATGAAGCGTTCATTTTAAGAAAAGGTATTCACATTTGTTCTGCAATACTTGAAAACAACTTATACAAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTGAGATATTTAGAACAGCTAAAACTCAGTATAAAAGACAAAAGGTTTCTTCCAATGCCTTCTTATGGCACTTAAGACTCGGTCACATTAATCTCAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTCCTTGTGATTCCTGTCTTGAAGAAAAAATGATCAAAAGATCTTTTACTGAAAAAGGTCTTAGAGCCAAAACACCTTTGGAGCTCGTACATTCGGACCTTTGTGGATCAATGAATGTCAAGGCTAGTTTCATTGATGATTATTCGAGGTATGGTCATGTTTACCTAATTCATAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAAGCTAAAGTTGAAAATGAATCAGGTAAAACAATAAAGACATTTCGATCAGATCAAGGTGGAGAGTATATGGACTTGCGATTTCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAATGGTGTATCAGAAAGAAGAAACCGAACTTTGTTGGACATGGGATATGCTTTAGAAACAACTATCTATATTTTGAACAACGTTCCCTCTAAAAGTGTTTTTGAAATACCTTATGAGTTATGGAAAGGACGTAAATGTAGTTTACGTCACTTTAGAATTTGGGGATGTCCAACACACGTGTTAGTGCAAAACCCTAAAAAATTTGAACGTCGTTAA

Coding sequence (CDS)

ATGGTCTTAGCTAAAGCAGTGGGAGATTTGAAGTTGTTTTTTAATGATAGATATATCTTACTCAAGAATGTCTTGTATGCACCTCAAATGAAGAGAAATTTGATATTCATCTTTTGTTTATTAGAACATATGTATAAAATATCTTTTGAAATTAATGAAGCGTTCATTTTAAGAAAAGGTATTCACATTTGTTCTGCAATACTTGAAAACAACTTATACAAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTGAGATATTTAGAACAGCTAAAACTCAGTATAAAAGACAAAAGGTTTCTTCCAATGCCTTCTTATGGCACTTAAGACTCGGTCACATTAATCTCAATAGGATTGGGAGATTGGTTAAGAGTGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTCCTTGTGATTCCTGTCTTGAAGAAAAAATGATCAAAAGATCTTTTACTGAAAAAGGTCTTAGAGCCAAAACACCTTTGGAGCTCGTACATTCGGACCTTTGTGGATCAATGAATGTCAAGGCTAGTTTCATTGATGATTATTCGAGGTATGGTCATGTTTACCTAATTCATAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAATATAAAGCTAAAGTTGAAAATGAATCAGGTAAAACAATAAAGACATTTCGATCAGATCAAGGTGGAGAGTATATGGACTTGCGATTTCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAGAATGGTGTATCAGAAAGAAGAAACCGAACTTTGTTGGACATGGGATATGCTTTAGAAACAACTATCTATATTTTGAACAACGTTCCCTCTAAAAGTGTTTTTGAAATACCTTATGAGTTATGGAAAGGACGTAAATGTAGTTTACGTCACTTTAGAATTTGGGGATGTCCAACACACGTGTTAGTGCAAAACCCTAAAAAATTTGAACGTCGTTAA

Protein sequence

MVLAKAVGDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKGIHICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVKASFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMGYALETTIYILNNVPSKSVFEIPYELWKGRKCSLRHFRIWGCPTHVLVQNPKKFERR

Homology

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BLAST of Cmc03g0072261 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 534.6 bits (1376), Expect = 5.8e-148
Identity = 271/350 (77.43%), Postives = 295/350 (84.29%), Query Frame = 0


Query: 1   MVLAKAVGDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKG 60
           +V A+AVGDL LFF DRY++LK+VLY P MKRNLI I C+LEH+Y ISFE+NE FIL KG
Sbjct: 338 VVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKG 397

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVSSNAFLWHLRLGHINLNRI 120
           I ICSAI ENNLYKLRPTRAN VLNTE+FRT +TQ K+QKVSSNA+LWHLRLGHINLNRI
Sbjct: 398 IQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRI 457

Query: 121 GRLVKSGLLSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVKA- 180
            RLVKSG+L+QLEDNSLPPC+SCLE KM KRSFT KGLRAK PLELVHSDLCG MNVKA 
Sbjct: 458 ERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKAR 517

Query: 181 -------SFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEYMD 240
                  SFIDD+SRYGHVYL+H+KS+SFEKFKEYKA+VENE GKTIKT RSD+GGEYMD
Sbjct: 518 GGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMD 577

Query: 241 LRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDM---------------GYALETT 300
            +FQDYLIE GIQSQLSAPSTPQQNGVSERRNRTLLDM               GYALET 
Sbjct: 578 SKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETA 637

Query: 301 IYILNNVPSKSVFEIPYELWKGRKCSLRHFRIWGCPTHVLVQNPKKFERR 328
           I+ILNNVPSKSV E PYELWKGRK SLR+FRIWGCP HVLVQNPKK E R
Sbjct: 638 IHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPR 687

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BLAST of Cmc03g0072261 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 469.5 bits (1207), Expect = 2.3e-128
Identity = 233/352 (66.19%), Postives = 277/352 (78.69%), Query Frame = 0


Query: 1   MVLAKAVGDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKG 60
           ++ A+AVGD KLFF ++++ L+N+   P++KRNL+ + CL+EHMY I+F +NEAFI + G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVS--SNAFLWHLRLGHINLN 120
           +HICSA LENNLY LRP  A  VLN E+FRTA TQ KRQ++S  +N +LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVK 180
           RIGRLVK+GLL++L+D SLPPC+SCLE KM KR FT KG RAK PLEL+HSDLCG MNVK
Sbjct: 362 RIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 A--------SFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEY 240
           A        SFIDDYSRYG++YL+ +KS++ EKFKEYK +VEN   K IK  RSD+GGEY
Sbjct: 422 ARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 481

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDM---------------GYALE 300
           MDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDM               GYA+E
Sbjct: 482 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TTIYILNNVPSKSVFEIPYELWKGRKCSLRHFRIWGCPTHVLVQNPKKFERR 328
           T ++ILNNVPSKSV E P+ELW+GRK SL HFRIWGCP HVLV NPKK E R
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPR 593

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BLAST of Cmc03g0072261 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 468.4 bits (1204), Expect = 5.1e-128
Identity = 233/352 (66.19%), Postives = 276/352 (78.41%), Query Frame = 0


Query: 1   MVLAKAVGDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKG 60
           ++ A+AVGD KLFF ++++ L+N+   P++KRNL+ + CL+EHMY I+F +NEAFI + G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVS--SNAFLWHLRLGHINLN 120
           +HICSA LENNLY LRP  A  VLN E+FRTA TQ KRQ++S  +N +LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVK 180
           RIGRLVK GLL++L+D SLPPC+SCLE KM KR FT KG RAK PLEL+HSDLCG MNVK
Sbjct: 362 RIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 A--------SFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEY 240
           A        SFIDDYSRYG++YL+ +KS++ EKFKEYK +VEN   K IK FRSD+GGEY
Sbjct: 422 ARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEY 481

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDM---------------GYALE 300
           MDL FQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDM               GYA+E
Sbjct: 482 MDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TTIYILNNVPSKSVFEIPYELWKGRKCSLRHFRIWGCPTHVLVQNPKKFERR 328
           T ++ILNNVPSKSV E P+ELW+GRK SL HFRIWGCP HVLV NPKK E R
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPR 593

[Close]

BLAST of Cmc03g0072261 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 465.7 bits (1197), Expect = 3.3e-127
Identity = 231/352 (65.62%), Postives = 275/352 (78.12%), Query Frame = 0


Query: 1   MVLAKAVGDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKG 60
           ++ A+AVGD KLFF ++++ L+N+   P++KRNL+ + CL+EHMY ISF +NEAFI + G
Sbjct: 214 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSMNEAFISKNG 273

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVSS--NAFLWHLRLGHINLN 120
           +HICS  LE+NLY L+P     VLN E+FRTA TQ KRQ++SS  N +LWHLRLGHINL+
Sbjct: 274 VHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWHLRLGHINLD 333

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVK 180
           RIGRLVK+GLL++LED+SLPPC+SCLE KM KR FT KG RAK PLEL+HSDLCG MNVK
Sbjct: 334 RIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 393

Query: 181 A--------SFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEY 240
           A        SFIDDYS YG++YLI +KS++ EKFKEYK +VEN   K IK  RSD+GGEY
Sbjct: 394 AIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 453

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDM---------------GYALE 300
           MDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDM               GYA+E
Sbjct: 454 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVE 513

Query: 301 TTIYILNNVPSKSVFEIPYELWKGRKCSLRHFRIWGCPTHVLVQNPKKFERR 328
           T ++ILNNVPSK+VFE P+ELW+GRK SL HFRIW CP HVLV NPKK E R
Sbjct: 514 TAVHILNNVPSKNVFETPFELWRGRKPSLSHFRIWVCPVHVLVTNPKKLEPR 565

[Close]

BLAST of Cmc03g0072261 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 434.1 bits (1115), Expect = 1.1e-117
Identity = 226/352 (64.20%), Postives = 263/352 (74.72%), Query Frame = 0


Query: 1   MVLAKAVGDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKG 60
           +V A AVG L+L     ++LL+NV   P +KRNLI + CLLE  Y ++F +N+ FI + G
Sbjct: 344 VVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNG 403

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVS--SNAFLWHLRLGHINLN 120
           + ICSA LENNLY LR   +  +LNTE+F+TA TQ KR K+S   NA LWHLRLGHINLN
Sbjct: 404 VEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLN 463

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVK 180
           RI RLVK+GLLS+LE+NSLP C+SCLE KM KR FT KG RAK PLELVHSDLCG MNVK
Sbjct: 464 RIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVK 523

Query: 181 A--------SFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEY 240
           A        +F DDYSRYG+VYL+ +KS++ EKFKEYKA+VEN   KTIKTFRSD+GGEY
Sbjct: 524 ARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEY 583

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDM---------------GYALE 300
           MDL+FQ+YL+E GI SQLSAP TPQQNGVSERRNRTLLDM               GYA++
Sbjct: 584 MDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQ 643

Query: 301 TTIYILNNVPSKSVFEIPYELWKGRKCSLRHFRIWGCPTHVLVQNPKKFERR 328
           T +YILN VPSKSV E P +LW GRK SLRHFRIWGCP HVL  NPKK E R
Sbjct: 644 TAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPR 695

[Close]

BLAST of Cmc03g0072261 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.9e-41
Identity = 105/319 (32.92%), Postives = 169/319 (52.98%), Query Frame = 0


Query: 19  ILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKG-IHICSAILENNLYKLRP 78
           ++LK+V + P ++ NLI    L    Y+ S+  N+ + L KG + I   +    LY+   
Sbjct: 348 LVLKDVRHVPDLRMNLISGIALDRDGYE-SYFANQKWRLTKGSLVIAKGVARGTLYR--- 407

Query: 79  TRANFVLNTEIFRTAKTQYKRQKVSSNAFLWHLRLGHINLNRIGRLVKSGLLSQLEDNSL 138
                  N EI +  +    + ++S +  LWH R+GH++   +  L K  L+S  +  ++
Sbjct: 408 ------TNAEICQ-GELNAAQDEISVD--LWHKRMGHMSEKGLQILAKKSLISYAKGTTV 467

Query: 139 PPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVKA--------SFIDDYSRYG 198
            PCD CL  K  + SF     R    L+LV+SD+CG M +++        +FIDD SR  
Sbjct: 468 KPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKL 527

Query: 199 HVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEYMDLRFQDYLIEHGIQSQLS 258
            VY++  K   F+ F+++ A VE E+G+ +K  RSD GGEY    F++Y   HGI+ + +
Sbjct: 528 WVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKT 587

Query: 259 APSTPQQNGVSERRNRTLLD---------------MGYALETTIYILNNVPSKSV-FEIP 313
            P TPQ NGV+ER NRT+++                G A++T  Y++N  PS  + FEIP
Sbjct: 588 VPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIP 647

[Close]

BLAST of Cmc03g0072261 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 134.4 bits (337), Expect = 2.3e-30
Identity = 103/348 (29.60%), Postives = 163/348 (46.84%), Query Frame = 0


Query: 15  NDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKGIHICSAILENNLYK 74
           ND  I L++VL+  +   NL+ +  L E    I F+ +   I + G+ +   +  + +  
Sbjct: 339 NDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMV---VKNSGMLN 398

Query: 75  LRPTRANFVLNTEIFRTAKTQYKRQKVSSNAFLWHLRLGHIN------LNRIGRLVKSGL 134
             P     V+N + +          K  +N  LWH R GHI+      + R        L
Sbjct: 399 NVP-----VINFQAYSI------NAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSL 458

Query: 135 LSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKT----PLELVHSDLCGSM--------N 194
           L+ LE  S   C+ CL  K  +  F  K L+ KT    PL +VHSD+CG +        N
Sbjct: 459 LNNLE-LSCEICEPCLNGKQARLPF--KQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKN 518

Query: 195 VKASFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEYMDLRFQ 254
               F+D ++ Y   YLI  KSD F  F+++ AK E      +     D G EY+    +
Sbjct: 519 YFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMR 578

Query: 255 DYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLD---------------MGYALETTIYIL 314
            + ++ GI   L+ P TPQ NGVSER  RT+ +                G A+ T  Y++
Sbjct: 579 QFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLI 638

Query: 315 NNVPSKSVFE---IPYELWKGRKCSLRHFRIWGCPTHVLVQNPK-KFE 326
           N +PS+++ +    PYE+W  +K  L+H R++G   +V ++N + KF+
Sbjct: 639 NRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFD 669

[Close]

BLAST of Cmc03g0072261 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.8e-26
Identity = 89/335 (26.57%), Postives = 155/335 (46.27%), Query Frame = 0


Query: 8   GDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLE------HMYKISFEINEAFILRKGI 67
           G   L  + R + L  VLY P + +NLI ++ L          +  SF++ +   L  G+
Sbjct: 353 GSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKD---LNTGV 412

Query: 68  HICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVSSNAFLWHLRLGHINLNRIG 127
            +     ++ LY+  P  ++  ++      +K  +           WH RLGH +L  + 
Sbjct: 413 PLLQGKTKDELYEW-PIASSQAVSMFASPCSKATHSS---------WHSRLGHPSLAILN 472

Query: 128 RLVKSGLLSQLE-DNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVKAS 187
            ++ +  L  L   + L  C  C   K  K  F+   + +  PLE ++SD+  S  +   
Sbjct: 473 SVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSID 532

Query: 188 -------FIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEYMDL 247
                  F+D ++RY  +Y +  KS   + F  +K+ VEN     I T  SD GGE++ L
Sbjct: 533 NYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVL 592

Query: 248 RFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMG---------------YALETTI 307
           R  DYL +HGI    S P TP+ NG+SER++R +++MG               YA    +
Sbjct: 593 R--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAV 652

Query: 308 YILNNVPSKSV-FEIPYELWKGRKCSLRHFRIWGC 313
           Y++N +P+  +  + P++   G+  +    +++GC
Sbjct: 653 YLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGC 672

[Close]

BLAST of Cmc03g0072261 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.4e-25
Identity = 88/335 (26.27%), Postives = 152/335 (45.37%), Query Frame = 0


Query: 8   GDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLE------HMYKISFEINEAFILRKGI 67
           G   L    R + L N+LY P + +NLI ++ L          +  SF++ +   L  G+
Sbjct: 374 GSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKD---LNTGV 433

Query: 68  HICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVSSNAFLWHLRLGHINLNRIG 127
            +     ++ LY+  P  ++  ++     ++K  +           WH RLGH   + + 
Sbjct: 434 PLLQGKTKDELYEW-PIASSQPVSLFASPSSKATHSS---------WHARLGHPAPSILN 493

Query: 128 RLVKSGLLSQLE-DNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGS------ 187
            ++ +  LS L   +    C  CL  K  K  F++  + +  PLE ++SD+  S      
Sbjct: 494 SVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSHD 553

Query: 188 -MNVKASFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEYMDL 247
                  F+D ++RY  +Y +  KS   E F  +K  +EN     I TF SD GGE++ L
Sbjct: 554 NYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVAL 613

Query: 248 RFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDMG---------------YALETTI 307
              +Y  +HGI    S P TP+ NG+SER++R +++ G               YA    +
Sbjct: 614 --WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAV 673

Query: 308 YILNNVPSKSV-FEIPYELWKGRKCSLRHFRIWGC 313
           Y++N +P+  +  E P++   G   +    R++GC
Sbjct: 674 YLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGC 693

[Close]

BLAST of Cmc03g0072261 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.5e-09
Identity = 47/185 (25.41%), Postives = 83/185 (44.86%), Query Frame = 0


Query: 107 LWHLRLGHINLNRIGRLVKSGLLSQLEDNSLP-------PCDSCLEEKMIKRSFTEKGLR 166
           L H  LGH N   I + +K   ++ L+++ +         C  CL  K  K     KG R
Sbjct: 593 LIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTKHRHV-KGSR 652

Query: 167 AK-----TPLELVHSDLCGSM--------NVKASFIDDYSRYGHVYLIHNKSDS--FEKF 226
            K      P + +H+D+ G +        +   SF D+ +R+  VY +H++ +      F
Sbjct: 653 LKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVF 712

Query: 227 KEYKAKVENESGKTIKTFRSDQGGEYMDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRN 270
               A ++N+    +   + D+G EY +     +    GI +  +  +  + +GV+ER N
Sbjct: 713 TSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLN 772

[Close]

BLAST of Cmc03g0072261 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 2.8e-148
Identity = 271/350 (77.43%), Postives = 295/350 (84.29%), Query Frame = 0


Query: 1   MVLAKAVGDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKG 60
           +V A+AVGDL LFF DRY++LK+VLY P MKRNLI I C+LEH+Y ISFE+NE FIL KG
Sbjct: 338 VVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKG 397

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVSSNAFLWHLRLGHINLNRI 120
           I ICSAI ENNLYKLRPTRAN VLNTE+FRT +TQ K+QKVSSNA+LWHLRLGHINLNRI
Sbjct: 398 IQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRI 457

Query: 121 GRLVKSGLLSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVKA- 180
            RLVKSG+L+QLEDNSLPPC+SCLE KM KRSFT KGLRAK PLELVHSDLCG MNVKA 
Sbjct: 458 ERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKAR 517

Query: 181 -------SFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEYMD 240
                  SFIDD+SRYGHVYL+H+KS+SFEKFKEYKA+VENE GKTIKT RSD+GGEYMD
Sbjct: 518 GGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMD 577

Query: 241 LRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDM---------------GYALETT 300
            +FQDYLIE GIQSQLSAPSTPQQNGVSERRNRTLLDM               GYALET 
Sbjct: 578 SKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETA 637

Query: 301 IYILNNVPSKSVFEIPYELWKGRKCSLRHFRIWGCPTHVLVQNPKKFERR 328
           I+ILNNVPSKSV E PYELWKGRK SLR+FRIWGCP HVLVQNPKK E R
Sbjct: 638 IHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPR 687

[Close]

BLAST of Cmc03g0072261 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 1.1e-128
Identity = 233/352 (66.19%), Postives = 277/352 (78.69%), Query Frame = 0


Query: 1   MVLAKAVGDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKG 60
           ++ A+AVGD KLFF ++++ L+N+   P++KRNL+ + CL+EHMY I+F +NEAFI + G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVS--SNAFLWHLRLGHINLN 120
           +HICSA LENNLY LRP  A  VLN E+FRTA TQ KRQ++S  +N +LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVK 180
           RIGRLVK+GLL++L+D SLPPC+SCLE KM KR FT KG RAK PLEL+HSDLCG MNVK
Sbjct: 362 RIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 A--------SFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEY 240
           A        SFIDDYSRYG++YL+ +KS++ EKFKEYK +VEN   K IK  RSD+GGEY
Sbjct: 422 ARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 481

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDM---------------GYALE 300
           MDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDM               GYA+E
Sbjct: 482 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TTIYILNNVPSKSVFEIPYELWKGRKCSLRHFRIWGCPTHVLVQNPKKFERR 328
           T ++ILNNVPSKSV E P+ELW+GRK SL HFRIWGCP HVLV NPKK E R
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPR 593

[Close]

BLAST of Cmc03g0072261 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 2.5e-128
Identity = 233/352 (66.19%), Postives = 276/352 (78.41%), Query Frame = 0


Query: 1   MVLAKAVGDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKG 60
           ++ A+AVGD KLFF ++++ L+N+   P++KRNL+ + CL+EHMY I+F +NEAFI + G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVS--SNAFLWHLRLGHINLN 120
           +HICSA LENNLY LRP  A  VLN E+FRTA TQ KRQ++S  +N +LWHLRLGHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVK 180
           RIGRLVK GLL++L+D SLPPC+SCLE KM KR FT KG RAK PLEL+HSDLCG MNVK
Sbjct: 362 RIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 A--------SFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEY 240
           A        SFIDDYSRYG++YL+ +KS++ EKFKEYK +VEN   K IK FRSD+GGEY
Sbjct: 422 ARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEY 481

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDM---------------GYALE 300
           MDL FQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDM               GYA+E
Sbjct: 482 MDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 TTIYILNNVPSKSVFEIPYELWKGRKCSLRHFRIWGCPTHVLVQNPKKFERR 328
           T ++ILNNVPSKSV E P+ELW+GRK SL HFRIWGCP HVLV NPKK E R
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPR 593

[Close]

BLAST of Cmc03g0072261 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.6e-127
Identity = 231/352 (65.62%), Postives = 275/352 (78.12%), Query Frame = 0


Query: 1   MVLAKAVGDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKG 60
           ++ A+AVGD KLFF ++++ L+N+   P++KRNL+ + CL+EHMY ISF +NEAFI + G
Sbjct: 214 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSMNEAFISKNG 273

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVSS--NAFLWHLRLGHINLN 120
           +HICS  LE+NLY L+P     VLN E+FRTA TQ KRQ++SS  N +LWHLRLGHINL+
Sbjct: 274 VHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWHLRLGHINLD 333

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVK 180
           RIGRLVK+GLL++LED+SLPPC+SCLE KM KR FT KG RAK PLEL+HSDLCG MNVK
Sbjct: 334 RIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 393

Query: 181 A--------SFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEY 240
           A        SFIDDYS YG++YLI +KS++ EKFKEYK +VEN   K IK  RSD+GGEY
Sbjct: 394 AIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 453

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDM---------------GYALE 300
           MDLRFQDY+IEHGIQSQLSAP TPQQNGVSERRNRTLLDM               GYA+E
Sbjct: 454 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVE 513

Query: 301 TTIYILNNVPSKSVFEIPYELWKGRKCSLRHFRIWGCPTHVLVQNPKKFERR 328
           T ++ILNNVPSK+VFE P+ELW+GRK SL HFRIW CP HVLV NPKK E R
Sbjct: 514 TAVHILNNVPSKNVFETPFELWRGRKPSLSHFRIWVCPVHVLVTNPKKLEPR 565

[Close]

BLAST of Cmc03g0072261 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 5.2e-118
Identity = 226/352 (64.20%), Postives = 263/352 (74.72%), Query Frame = 0


Query: 1   MVLAKAVGDLKLFFNDRYILLKNVLYAPQMKRNLIFIFCLLEHMYKISFEINEAFILRKG 60
           +V A AVG L+L     ++LL+NV   P +KRNLI + CLLE  Y ++F +N+ FI + G
Sbjct: 345 VVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNG 404

Query: 61  IHICSAILENNLYKLRPTRANFVLNTEIFRTAKTQYKRQKVS--SNAFLWHLRLGHINLN 120
           + ICSA LENNLY LR   +  +LNTE+F+TA TQ KR K+S   NA LWHLRLGHINLN
Sbjct: 405 VEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLN 464

Query: 121 RIGRLVKSGLLSQLEDNSLPPCDSCLEEKMIKRSFTEKGLRAKTPLELVHSDLCGSMNVK 180
           RI RLVK+GLLS+LE+NSLP C+SCLE KM KR FT KG RAK PLELVHSDLCG MNVK
Sbjct: 465 RIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVK 524

Query: 181 A--------SFIDDYSRYGHVYLIHNKSDSFEKFKEYKAKVENESGKTIKTFRSDQGGEY 240
           A        +F DDYSRYG+VYL+ +KS++ EKFKEYKA+VEN   KTIKTFRSD+GGEY
Sbjct: 525 ARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEY 584

Query: 241 MDLRFQDYLIEHGIQSQLSAPSTPQQNGVSERRNRTLLDM---------------GYALE 300
           MDL+FQ+YL+E GI SQLSAP TPQQNGVSERRNRTLLDM               GYA++
Sbjct: 585 MDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQ 644

Query: 301 TTIYILNNVPSKSVFEIPYELWKGRKCSLRHFRIWGCPTHVLVQNPKKFERR 328
           T +YILN VPSKSV E P +LW GRK SLRHFRIWGCP HVL  NPKK E R
Sbjct: 645 TAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPR 696

The following BLAST results are available for this feature:

BLAST of Cmc03g0072261 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	5.8e-148	77.43	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	2.3e-128	66.19	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	5.1e-128	66.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	3.3e-127	65.63	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0048404.1	1.1e-117	64.20	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0072261 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.9e-41	32.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.3e-30	29.60	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	5.8e-26	26.57	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	6.4e-25	26.27	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12491	8.5e-09	25.41	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc03g0072261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	2.8e-148	77.43	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	1.1e-128	66.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	2.5e-128	66.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	1.6e-127	65.63	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7SMH8	5.2e-118	64.20	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]

BLAST of Cmc03g0072261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 156..320 e-value: 8.2E-29 score: 102.3
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 92..148 e-value: 4.1E-12 score: 45.8
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 162..284
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 162..284
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 159..321 score: 16.640335
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 162..309

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0072261.1	Cmc03g0072261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding