Cmc03g0072171 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0072171
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	CMiso1.1chr03: 19105892 .. 19108150 (-)
RNA-Seq Expression	Cmc03g0072171
Synteny	Cmc03g0072171

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTTTTCTATGACGCCAGATTTGCATCCGTCTGAACTCTATCACAAACTCAAAACTCTACAAGCCCAAGCCCAAACTCACCGCCGCCCCGCTCTTGTCTTCCCCAAACCACCAGATCACCAGACCACCCCCTCATCTCGCTCTCAACCAACATTCGTCGTGCCGCTCATCTTGCCCACACCGGTACCCATGTTTTCTTCTTAAGGTATACAAAGTATCATAGACATTAATATGATCGATAGATAGCAACTACTTGATTTCCATTTCTTTCCGCAATAGGTCAAATTCCCACTTTTCCCTACATTCCTCGTAACTGTAACTAACAATTCACTCTTAGAATTTCCAAAACCTAAGTTGTGAAAATCTGCTAAGTGACTAGCGTCAGTCTTAATCTTATGAAAATTTAAATCAATTCTTAAAATTCTTGATATGGTTTTGATTGTGAGCGCTTGTGAAATCTCTGCTTGAACTTCCTCTGGCTGTTTAGTTGCTTTCTTATTCCTATAATCATTCTATACTTTGCCATTGAATCTTGTCTTTCTATTGGGGCAGTTAAATTTGGAGGTTGTAGAGAAAAAAAGAAATCAGCCTAGTGTGCGGTTAAATTCGAAAGTTCATGAAATTATGTGGCTACACCTTCTTCGGCCTGGTAATTATAGGACTATTGAGACTGTTGCTGCTCATGTTGCCCGTAATGCCCCATTGCTTCATAATTTAATCTCCTCCTCATCCTCTCTTTACCAACCACACTTAAATGTGCACAATGAATCAAAAACTTTGATAACCAATATAAATCATAAGCAGTGTGAAGATCAACCAGATTTCTCAATTGGGTCTCCATGTAGGGTCCAGAAACTCATTGCATCCCAGTCGGATCCTCTTCTTGCCAAGGAAATTTTCGACTATGCTTGTCGTCAACCCCATTTTCGACCATCATCTTCCTCTCTCCTCGTTCTTATCCTCAAGCTAGGCCGTTCCAAATACTTCTCTCTGATTGATGATCTTCTTCTTAGCTTCAAGTCTAGAGGTTACCCTGTCACTCCAACAGCCTTCTCCTACATAATCAAAATCTATGGTGAAGCTGATTTACCAGATAAAGCTCTTAAAGTCTTTTATACTATGATCGAGTTTGGGTGTACGCCTTCATCCAAACAATTGAACCGCATACTAGAAATTTTGGTTTCTCATCGTAACTTCATTCGACCAGCTTTTGATCTTTTCAAGAATGCCCGGCATCATGGAGTGTTGCCCAACACCAAGTCTTACAACATTCTTATTCGTGCATTCTGTTGGAATGGAAATATTAGTATTGCCTACAAACTGTTCAACAAAATGTTCGAAGGAGATGTCATTCCAGATGTCGAGACGTATCGGACATTAATGCAGGGTCTGTGCAGGAAGAATCAAGTGAATGGTGCTGTTGACTTGCTTGAAGATATGTTGAACAAAGGATACATTCCAGACACGTTGAGCTATGCCACTTTGTTAAATAGTTTATGTAGGAAGAAAAAGCTAAAGGAAGCTTATAAACTTCTCTGTAGAATGAAGGTTAAAGGTTGCAATCCTGATATTGCTCATTACAATACAGTTATAATGGGATTTTGCAGAGAAGGGCGTGCTCTTGATGCTTGTAAGATTCTGGAGGATATGCAATCAAATGGTTGTTTGCCTAATTTAGTTTCTTACGAGAGTTTGACTAATGGATTATGTGATCAAGGAATGTTTGAATTGGCAAAGGGTTATGTTGAGGAGATGACATTAAAGGGTTTTTACCCACATTTCTCTGTCATTCATGCTTTGGTTAAGGGTTTCCATAACGTTGGCAGAATGGACGAGTCATGTAGTGTTCTTGAAGGCATGCTAAAGCATGGGAAAGCCCCTCATTCCGATACTTGGGAGATTATTATATCTGGGATTTGTGAAGTTGAGGACACTGTCAAATTTTGTGAAATCTTAGAGAAGATTTTGAAGAAAGATGTAAGAAGAGACACTAGAATAGTTGAAGCAGGCACTGGTTTGGGTGAGTATTTAATTAGGAAGTTACAAGCTTCCAAATCACGAAGGATTTGAATCTTAGTTCACCTAGTTTGCAAGAGTATTCAAATTTTTAGTCTCTTGGTTGAGATATACGCCACAATCAATTGATTTGTAGCTCAAGTTGCACAAACGGCTTGAATTTTCATTGTACATGCTTGATTGAGTTTTTGGATATCTTCCATCCTATTTACAACATAATCAGGTCCTTTTTTATAATTA

mRNA sequence

TCTCTCTTTTCTATGACGCCAGATTTGCATCCGTCTGAACTCTATCACAAACTCAAAACTCTACAAGCCCAAGCCCAAACTCACCGCCGCCCCGCTCTTGTCTTCCCCAAACCACCAGATCACCAGACCACCCCCTCATCTCGCTCTCAACCAACATTCGTCGTGCCGCTCATCTTGCCCACACCGGTACCCATGTTTTCTTCTTAAGTTAAATTTGGAGGTTGTAGAGAAAAAAAGAAATCAGCCTAGTGTGCGGTTAAATTCGAAAGTTCATGAAATTATGTGGCTACACCTTCTTCGGCCTGGTAATTATAGGACTATTGAGACTGTTGCTGCTCATGTTGCCCGTAATGCCCCATTGCTTCATAATTTAATCTCCTCCTCATCCTCTCTTTACCAACCACACTTAAATGTGCACAATGAATCAAAAACTTTGATAACCAATATAAATCATAAGCAGTGTGAAGATCAACCAGATTTCTCAATTGGGTCTCCATGTAGGGTCCAGAAACTCATTGCATCCCAGTCGGATCCTCTTCTTGCCAAGGAAATTTTCGACTATGCTTGTCGTCAACCCCATTTTCGACCATCATCTTCCTCTCTCCTCGTTCTTATCCTCAAGCTAGGCCGTTCCAAATACTTCTCTCTGATTGATGATCTTCTTCTTAGCTTCAAGTCTAGAGGTTACCCTGTCACTCCAACAGCCTTCTCCTACATAATCAAAATCTATGGTGAAGCTGATTTACCAGATAAAGCTCTTAAAGTCTTTTATACTATGATCGAGTTTGGGTGTACGCCTTCATCCAAACAATTGAACCGCATACTAGAAATTTTGGTTTCTCATCGTAACTTCATTCGACCAGCTTTTGATCTTTTCAAGAATGCCCGGCATCATGGAGTGTTGCCCAACACCAAGTCTTACAACATTCTTATTCGTGCATTCTGTTGGAATGGAAATATTAGTATTGCCTACAAACTGTTCAACAAAATGTTCGAAGGAGATGTCATTCCAGATGTCGAGACGTATCGGACATTAATGCAGGGTCTGTGCAGGAAGAATCAAGTGAATGGTGCTGTTGACTTGCTTGAAGATATGTTGAACAAAGGATACATTCCAGACACGTTGAGCTATGCCACTTTGTTAAATAGTTTATGTAGGAAGAAAAAGCTAAAGGAAGCTTATAAACTTCTCTGTAGAATGAAGGTTAAAGGTTGCAATCCTGATATTGCTCATTACAATACAGTTATAATGGGATTTTGCAGAGAAGGGCGTGCTCTTGATGCTTGTAAGATTCTGGAGGATATGCAATCAAATGGTTGTTTGCCTAATTTAGTTTCTTACGAGAGTTTGACTAATGGATTATGTGATCAAGGAATGTTTGAATTGGCAAAGGGTTATGTTGAGGAGATGACATTAAAGGGTTTTTACCCACATTTCTCTGTCATTCATGCTTTGGTTAAGGGTTTCCATAACGTTGGCAGAATGGACGAGTCATGTAGTGTTCTTGAAGGCATGCTAAAGCATGGGAAAGCCCCTCATTCCGATACTTGGGAGATTATTATATCTGGGATTTGTGAAGTTGAGGACACTGTCAAATTTTGTGAAATCTTAGAGAAGATTTTGAAGAAAGATGTAAGAAGAGACACTAGAATAGTTGAAGCAGGCACTGGTTTGGGTGAGTATTTAATTAGGAAGTTACAAGCTTCCAAATCACGAAGGATTTGAATCTTAGTTCACCTAGTTTGCAAGAGTATTCAAATTTTTAGTCTCTTGGTTGAGATATACGCCACAATCAATTGATTTGTAGCTCAAGTTGCACAAACGGCTTGAATTTTCATTGTACATGCTTGATTGAGTTTTTGGATATCTTCCATCCTATTTACAACATAATCAGGTCCTTTTTTATAATTA

Coding sequence (CDS)

ATGTGGCTACACCTTCTTCGGCCTGGTAATTATAGGACTATTGAGACTGTTGCTGCTCATGTTGCCCGTAATGCCCCATTGCTTCATAATTTAATCTCCTCCTCATCCTCTCTTTACCAACCACACTTAAATGTGCACAATGAATCAAAAACTTTGATAACCAATATAAATCATAAGCAGTGTGAAGATCAACCAGATTTCTCAATTGGGTCTCCATGTAGGGTCCAGAAACTCATTGCATCCCAGTCGGATCCTCTTCTTGCCAAGGAAATTTTCGACTATGCTTGTCGTCAACCCCATTTTCGACCATCATCTTCCTCTCTCCTCGTTCTTATCCTCAAGCTAGGCCGTTCCAAATACTTCTCTCTGATTGATGATCTTCTTCTTAGCTTCAAGTCTAGAGGTTACCCTGTCACTCCAACAGCCTTCTCCTACATAATCAAAATCTATGGTGAAGCTGATTTACCAGATAAAGCTCTTAAAGTCTTTTATACTATGATCGAGTTTGGGTGTACGCCTTCATCCAAACAATTGAACCGCATACTAGAAATTTTGGTTTCTCATCGTAACTTCATTCGACCAGCTTTTGATCTTTTCAAGAATGCCCGGCATCATGGAGTGTTGCCCAACACCAAGTCTTACAACATTCTTATTCGTGCATTCTGTTGGAATGGAAATATTAGTATTGCCTACAAACTGTTCAACAAAATGTTCGAAGGAGATGTCATTCCAGATGTCGAGACGTATCGGACATTAATGCAGGGTCTGTGCAGGAAGAATCAAGTGAATGGTGCTGTTGACTTGCTTGAAGATATGTTGAACAAAGGATACATTCCAGACACGTTGAGCTATGCCACTTTGTTAAATAGTTTATGTAGGAAGAAAAAGCTAAAGGAAGCTTATAAACTTCTCTGTAGAATGAAGGTTAAAGGTTGCAATCCTGATATTGCTCATTACAATACAGTTATAATGGGATTTTGCAGAGAAGGGCGTGCTCTTGATGCTTGTAAGATTCTGGAGGATATGCAATCAAATGGTTGTTTGCCTAATTTAGTTTCTTACGAGAGTTTGACTAATGGATTATGTGATCAAGGAATGTTTGAATTGGCAAAGGGTTATGTTGAGGAGATGACATTAAAGGGTTTTTACCCACATTTCTCTGTCATTCATGCTTTGGTTAAGGGTTTCCATAACGTTGGCAGAATGGACGAGTCATGTAGTGTTCTTGAAGGCATGCTAAAGCATGGGAAAGCCCCTCATTCCGATACTTGGGAGATTATTATATCTGGGATTTGTGAAGTTGAGGACACTGTCAAATTTTGTGAAATCTTAGAGAAGATTTTGAAGAAAGATGTAAGAAGAGACACTAGAATAGTTGAAGCAGGCACTGGTTTGGGTGAGTATTTAATTAGGAAGTTACAAGCTTCCAAATCACGAAGGATTTGA

Protein sequence

MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQCEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEGDVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRRI

Homology

[Close]

BLAST of Cmc03g0072171 vs. NCBI nr
Match: KAA0035033.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK02366.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 986.1 bits (2548), Expect = 1.1e-283
Identity = 481/481 (100.00%), Postives = 481/481 (100.00%), Query Frame = 0


Query: 1   MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ 60
           MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ
Sbjct: 83  MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ 142

Query: 61  CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY 120
           CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY
Sbjct: 143 CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY 202

Query: 121 FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR 180
           FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR
Sbjct: 203 FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR 262

Query: 181 ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG 240
           ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG
Sbjct: 263 ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG 322

Query: 241 DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA 300
           DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA
Sbjct: 323 DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA 382

Query: 301 YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG 360
           YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG
Sbjct: 383 YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG 442

Query: 361 LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH 420
           LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH
Sbjct: 443 LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH 502

Query: 421 SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR 480
           SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR
Sbjct: 503 SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR 562

Query: 481 I 482
           I
Sbjct: 563 I 563

[Close]

BLAST of Cmc03g0072171 vs. NCBI nr
Match: XP_008463091.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like [Cucumis melo])

HSP 1 Score: 986.1 bits (2548), Expect = 1.1e-283
Identity = 481/481 (100.00%), Postives = 481/481 (100.00%), Query Frame = 0


Query: 1   MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ 60
           MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ
Sbjct: 1   MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ 60

Query: 61  CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY 120
           CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY
Sbjct: 61  CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY 120

Query: 121 FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR 180
           FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR
Sbjct: 121 FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR 180

Query: 181 ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG 240
           ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG
Sbjct: 181 ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG 240

Query: 241 DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA 300
           DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA
Sbjct: 241 DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA 300

Query: 301 YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG 360
           YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG
Sbjct: 301 YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG 360

Query: 361 LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH 420
           LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH
Sbjct: 361 LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH 420

Query: 421 SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR 480
           SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR
Sbjct: 421 SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR 480

Query: 481 I 482
           I
Sbjct: 481 I 481

[Close]

BLAST of Cmc03g0072171 vs. NCBI nr
Match: XP_004138384.1 (pentatricopeptide repeat-containing protein At4g01400, mitochondrial [Cucumis sativus] >KGN45858.1 hypothetical protein Csa_004855 [Cucumis sativus])

HSP 1 Score: 929.9 bits (2402), Expect = 9.1e-267
Identity = 456/482 (94.61%), Postives = 466/482 (96.68%), Query Frame = 0


Query: 1   MWLHLLRPGNYRTIETV-AAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHK 60
           MW HLLRP NYRTIETV AAHVAR +PLL NLISSSSSLYQPHLNVHNESK LITN+ H+
Sbjct: 1   MWQHLLRPCNYRTIETVAAAHVARKSPLLRNLISSSSSLYQPHLNVHNESKFLITNVKHE 60

Query: 61  QCEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSK 120
           QCEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSK
Sbjct: 61  QCEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSK 120

Query: 121 YFSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLN 180
           YFSLIDDLLLSFKSR YPVTPTAFSYIIKIYGEADLPDKALKVFYTMI+FGCTPSSKQLN
Sbjct: 121 YFSLIDDLLLSFKSRRYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIDFGCTPSSKQLN 180

Query: 181 RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFE 240
           RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAY LFNKMFE
Sbjct: 181 RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFE 240

Query: 241 GDVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKE 300
            +VIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKL+E
Sbjct: 241 RNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLRE 300

Query: 301 AYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTN 360
           AYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTN
Sbjct: 301 AYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTN 360

Query: 361 GLCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAP 420
           GLCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFH++GR+ ESCSVLE MLK GKAP
Sbjct: 361 GLCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHSIGRIHESCSVLEDMLKRGKAP 420

Query: 421 HSDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSR 480
           HSDTWEIIISGICEVEDT KFCE+ EKILKKDVRRDTRIVEAGTGLGEYLIRKLQAS SR
Sbjct: 421 HSDTWEIIISGICEVEDTAKFCEVWEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASISR 480

Query: 481 RI 482
           RI
Sbjct: 481 RI 482

[Close]

BLAST of Cmc03g0072171 vs. NCBI nr
Match: XP_038886671.1 (pentatricopeptide repeat-containing protein At4g01400, mitochondrial [Benincasa hispida] >XP_038886672.1 pentatricopeptide repeat-containing protein At4g01400, mitochondrial [Benincasa hispida] >XP_038886673.1 pentatricopeptide repeat-containing protein At4g01400, mitochondrial [Benincasa hispida])

HSP 1 Score: 887.1 bits (2291), Expect = 6.8e-254
Identity = 433/479 (90.40%), Postives = 451/479 (94.15%), Query Frame = 0


Query: 4   HLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLIT-NINHKQCE 63
           HLLRP NY TIET+AAHV    PLLH  ISSSSSLYQ  LNVH+ESKTLIT NINHKQC 
Sbjct: 4   HLLRPCNYNTIETIAAHVVPKTPLLHKSISSSSSLYQRDLNVHDESKTLITININHKQCG 63

Query: 64  DQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFS 123
           DQP FSIGSPCRVQKLIASQSDPLLAKEIF YACRQPHFRPSSSSL +LILKLGRSKYFS
Sbjct: 64  DQPHFSIGSPCRVQKLIASQSDPLLAKEIFYYACRQPHFRPSSSSLPILILKLGRSKYFS 123

Query: 124 LIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRIL 183
           LIDDLLLSFKSRGYPVTPT FSY+IKIYGEADLPDKALK FYTMIEFGCTPSSKQLNRIL
Sbjct: 124 LIDDLLLSFKSRGYPVTPTVFSYMIKIYGEADLPDKALKAFYTMIEFGCTPSSKQLNRIL 183

Query: 184 EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEGDV 243
           EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNIL+RAFCWNGN+SIAY LFNKMF+ DV
Sbjct: 184 EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGNLSIAYTLFNKMFKRDV 243

Query: 244 IPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYK 303
           IPDVE+YR LMQGLCRKNQVNGAVDLLEDMLNKGYIPD+LSYATLLNSLCRKKKL+EAYK
Sbjct: 244 IPDVESYRILMQGLCRKNQVNGAVDLLEDMLNKGYIPDSLSYATLLNSLCRKKKLREAYK 303

Query: 304 LLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLC 363
           LLCRMKVKGCNPD+AHYNT I+GFCREGRALDACKILEDMQSNGCLPNLVSY+SLTNGLC
Sbjct: 304 LLCRMKVKGCNPDVAHYNTAIIGFCREGRALDACKILEDMQSNGCLPNLVSYQSLTNGLC 363

Query: 364 DQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSD 423
           DQGMFELAK YVEEMTLKGF PHFS+IHALVKGF NVGR+DESCS+LE ML HGKAPHSD
Sbjct: 364 DQGMFELAKDYVEEMTLKGFCPHFSIIHALVKGFRNVGRIDESCSILEDMLNHGKAPHSD 423

Query: 424 TWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRRI 482
           TWEIIISGICEVEDTVK CEIL KILKKDVRRDTRIVEAG+GLGEYLIRKLQASKSRR+
Sbjct: 424 TWEIIISGICEVEDTVKLCEILGKILKKDVRRDTRIVEAGSGLGEYLIRKLQASKSRRV 482

[Close]

BLAST of Cmc03g0072171 vs. NCBI nr
Match: KAG6592265.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 881.3 bits (2276), Expect = 3.7e-252
Identity = 429/478 (89.75%), Postives = 451/478 (94.35%), Query Frame = 0


Query: 4   HLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTL-ITNINHKQCE 63
           HLLRP NY+T+ETVA H+A   PLLHN ISSSSSLYQP LNVHNE KTL  TNINHK  E
Sbjct: 4   HLLRPCNYKTLETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINHKHLE 63

Query: 64  DQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFS 123
            QPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSS LVLILKLGRSKYFS
Sbjct: 64  QQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFS 123

Query: 124 LIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRIL 183
           LIDDLLLSFKSRGYP++PT FSYIIKIYGEADLPDKALK FYTMIEFGCTPSSKQLNRIL
Sbjct: 124 LIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRIL 183

Query: 184 EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEGDV 243
           EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNIL+RAFCWNG++SIAY LFNKMF+ DV
Sbjct: 184 EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLSIAYTLFNKMFKRDV 243

Query: 244 IPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYK 303
           IPDVE+YR LMQGLCRKNQV GAVDLLEDMLNKGY+PDTLSYATLLNSLCRKKKL+EAYK
Sbjct: 244 IPDVESYRILMQGLCRKNQVIGAVDLLEDMLNKGYVPDTLSYATLLNSLCRKKKLREAYK 303

Query: 304 LLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLC 363
           LLCRMKVKGCNPD+AHYNTVI GFCREGRALDACKILEDMQSNGCLPNLVSY+SLTNGLC
Sbjct: 304 LLCRMKVKGCNPDVAHYNTVITGFCREGRALDACKILEDMQSNGCLPNLVSYQSLTNGLC 363

Query: 364 DQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSD 423
           DQGMFELAK YVEEM+LKGF PHFSVIH LVKGF NVGR+D+SCSVLE +LKHGKAPHS+
Sbjct: 364 DQGMFELAKDYVEEMSLKGFCPHFSVIHTLVKGFINVGRIDDSCSVLEDILKHGKAPHSE 423

Query: 424 TWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR 481
           TWEI++SGICEVEDTVK CEILEKILKKDVRRDTRIVEAG+GLGEYLIRKLQASKSRR
Sbjct: 424 TWEIVLSGICEVEDTVKLCEILEKILKKDVRRDTRIVEAGSGLGEYLIRKLQASKSRR 481

[Close]

BLAST of Cmc03g0072171 vs. ExPASy Swiss-Prot
Match: Q8LDU5 (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 552.7 bits (1423), Expect = 4.0e-156
Identity = 262/446 (58.74%), Postives = 341/446 (76.46%), Query Frame = 0


Query: 32  ISSSSSLYQPHLNVHNESKTLITNINHKQCEDQPDFSIGSPCRVQKLIASQSDPLLAKEI 91
           +S+SS       + H   K +++N         P   IGSP RVQKLIASQSDPLLAKEI
Sbjct: 20  LSTSSRFLFYSSSEHEARKPIVSN---------PKSPIGSPTRVQKLIASQSDPLLAKEI 79

Query: 92  FDYACRQPHFRPSSSSLLVLILKLGRSKYFSLIDDLLLSFKSRGYPVTPTAFSYIIKIYG 151
           FDYA +QP+FR S SS L+LILKLGR +YF+LIDD+L   +S GYP+T   F+Y+IK+Y 
Sbjct: 80  FDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYA 139

Query: 152 EADLPDKALKVFYTMIEFGCTPSSKQLNRILEILVSHRNFIRPAFDLFKNARHHGVLPNT 211
           EA LP+K L  FY M+EF  TP  K LNRIL++LVSHR +++ AF+LFK++R HGV+PNT
Sbjct: 140 EAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNT 199

Query: 212 KSYNILIRAFCWNGNISIAYKLFNKMFEGDVIPDVETYRTLMQGLCRKNQVNGAVDLLED 271
           +SYN+L++AFC N ++SIAY+LF KM E DV+PDV++Y+ L+QG CRK QVNGA++LL+D
Sbjct: 200 RSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDD 259

Query: 272 MLNKGYIPDTLSYATLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIAHYNTVIMGFCREGR 331
           MLNKG++PD LSY TLLNSLCRK +L+EAYKLLCRMK+KGCNPD+ HYNT+I+GFCRE R
Sbjct: 260 MLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDR 319

Query: 332 ALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYVEEMTLKGFYPHFSVIHA 391
           A+DA K+L+DM SNGC PN VSY +L  GLCDQGMF+  K Y+EEM  KGF PHFSV + 
Sbjct: 320 AMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNC 379

Query: 392 LVKGFHNVGRMDESCSVLEGMLKHGKAPHSDTWEIIISGICEVEDTVKFCEILEKILKKD 451
           LVKGF + G+++E+C V+E ++K+G+  HSDTWE++I  IC  +++ K    LE  +K++
Sbjct: 380 LVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNEDESEKIKLFLEDAVKEE 439

Query: 452 VRRDTRIVEAGTGLGEYLIRKLQASK 478
           +  DTRIV+ G GLG YL  KLQ  +
Sbjct: 440 ITGDTRIVDVGIGLGSYLSSKLQMKR 456

[Close]

BLAST of Cmc03g0072171 vs. ExPASy Swiss-Prot
Match: Q9FNL2 (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.7e-54
Identity = 118/372 (31.72%), Postives = 195/372 (52.42%), Query Frame = 0


Query: 71  SPCRVQKLIASQSDPLLAKEIFDYACRQ--PHFRPSSSSLLVLILKLGRSKYFSLIDDLL 130
           +P +V KL+ ++ D   +  +FD A  +    +    SS   ++L+L  +  F   +DL+
Sbjct: 15  TPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLI 74

Query: 131 LSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRILEILVSH 190
           +  K     V+      I + YG    P  +L+VF+ M +F C PS K    +L ILV  
Sbjct: 75  VRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILV-E 134

Query: 191 RNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWN-GNISIAYKLFNKMFEGDVIPDVE 250
            N +  AF  +KN R  G+ P   S N+LI+A C N G +    K+F +M +    PD  
Sbjct: 135 ENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSY 194

Query: 251 TYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYKLLCRM 310
           TY TL+ GLCR  +++ A  L  +M+ K   P  ++Y +L+N LC  K + EA + L  M
Sbjct: 195 TYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEM 254

Query: 311 KVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMF 370
           K KG  P++  Y++++ G C++GR+L A ++ E M + GC PN+V+Y +L  GLC +   
Sbjct: 255 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 314

Query: 371 ELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSDTWEI- 430
           + A   ++ M L+G  P   +   ++ GF  + +  E+ + L+ M+  G  P+  TW I 
Sbjct: 315 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIH 374

Query: 431 ------IISGIC 433
                 ++ G+C
Sbjct: 375 VKTSNEVVRGLC 385

[Close]

BLAST of Cmc03g0072171 vs. ExPASy Swiss-Prot
Match: O49436 (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX=3702 GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.2e-49
Identity = 112/382 (29.32%), Postives = 202/382 (52.88%), Query Frame = 0


Query: 71  SPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFSLIDDLLLS 130
           SP    +++ +  +  +++++F  A +   F+   S+L  +I     S  F  ++ LL  
Sbjct: 43  SPNPSMEVVENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSR 102

Query: 131 FKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMI-EFGCTPSSKQLNRILEILVSHR 190
            +     +   +F  + + YG+A LPDKA+ +F+ M+ EF C  S K  N +L ++++  
Sbjct: 103 IRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEG 162

Query: 191 NFIR--PAFDLFKNAR-HHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEGDVIPDV 250
            + R    +D   N+  +  + PN  S+N++I+A C    +  A ++F  M E   +PD 
Sbjct: 163 LYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDG 222

Query: 251 ETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYKLLCR 310
            TY TLM GLC++ +++ AV LL++M ++G  P  + Y  L++ LC+K  L    KL+  
Sbjct: 223 YTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDN 282

Query: 311 MKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGM 370
           M +KGC P+   YNT+I G C +G+   A  +LE M S+ C+PN V+Y +L NGL  Q  
Sbjct: 283 MFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRR 342

Query: 371 FELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSDTWEI 430
              A   +  M  +G++ +  +   L+ G    G+ +E+ S+   M + G  P+   + +
Sbjct: 343 ATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSV 402

Query: 431 IISGICEVEDTVKFCEILEKIL 449
           ++ G+C      +  EIL +++
Sbjct: 403 LVDGLCREGKPNEAKEILNRMI 424

[Close]

BLAST of Cmc03g0072171 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.2e-49
Identity = 107/318 (33.65%), Postives = 169/318 (53.14%), Query Frame = 0


Query: 139 TPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRILEILVSHRNFIRPAFDL 198
           T + F  ++K Y    L DKAL + +     G  P     N +L+  +  +  I  A ++
Sbjct: 133 TSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENV 192

Query: 199 FKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEGDVIPDVETYRTLMQGLCR 258
           FK      V PN  +YNILIR FC+ GNI +A  LF+KM     +P+V TY TL+ G C+
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252

Query: 259 KNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIAH 318
             +++    LL  M  KG  P+ +SY  ++N LCR+ ++KE   +L  M  +G + D   
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVT 312

Query: 319 YNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYVEEMT 378
           YNT+I G+C+EG    A  +  +M  +G  P++++Y SL + +C  G    A  ++++M 
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372

Query: 379 LKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSDTWEIIISGIC---EVE 438
           ++G  P+      LV GF   G M+E+  VL  M  +G +P   T+  +I+G C   ++E
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432

Query: 439 DTVKFCE-ILEKILKKDV 453
           D +   E + EK L  DV
Sbjct: 433 DAIAVLEDMKEKGLSPDV 450

[Close]

BLAST of Cmc03g0072171 vs. ExPASy Swiss-Prot
Match: Q9LQQ1 (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.7e-46
Identity = 111/369 (30.08%), Postives = 189/369 (51.22%), Query Frame = 0


Query: 84  DPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFSLIDDLLLSFKSRGYPVTPTAF 143
           DP  A  +F +  ++  FR    S   LI KL +S+ F  +D +L   + R      + F
Sbjct: 61  DPEEALSLF-HQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLF 120

Query: 144 SYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRILEILVSHRNFIRPAFDLFKNAR 203
             +I+ YG+A   DKA+ VF+ +  F C  + + LN ++ +LV +   +  A   F  A+
Sbjct: 121 MGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGE-LEKAKSFFDGAK 180

Query: 204 HHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEGDVIPDVETYRTLMQGLCRKNQVN 263
              + PN+ S+NILI+ F    +   A K+F++M E +V P V TY +L+  LCR + + 
Sbjct: 181 DMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMG 240

Query: 264 GAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIAHYNTVI 323
            A  LLEDM+ K   P+ +++  L+  LC K +  EA KL+  M+ +GC P + +Y  ++
Sbjct: 241 KAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILM 300

Query: 324 MGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYVEEMTLKGFY 383
               + GR  +A  +L +M+     P++V Y  L N LC +     A   + EM +KG  
Sbjct: 301 SDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCK 360

Query: 384 PHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSDTWEIIISGICEVEDTVKFCEI 443
           P+ +    ++ GF  +   D   +VL  ML     P   T+  +++G+ +  +    C +
Sbjct: 361 PNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFV 420

Query: 444 LEKILKKDV 453
           LE + KK++
Sbjct: 421 LEVMGKKNL 427

[Close]

BLAST of Cmc03g0072171 vs. ExPASy TrEMBL
Match: A0A5A7SWW3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00670 PE=4 SV=1)

HSP 1 Score: 986.1 bits (2548), Expect = 5.2e-284
Identity = 481/481 (100.00%), Postives = 481/481 (100.00%), Query Frame = 0


Query: 1   MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ 60
           MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ
Sbjct: 83  MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ 142

Query: 61  CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY 120
           CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY
Sbjct: 143 CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY 202

Query: 121 FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR 180
           FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR
Sbjct: 203 FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR 262

Query: 181 ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG 240
           ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG
Sbjct: 263 ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG 322

Query: 241 DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA 300
           DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA
Sbjct: 323 DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA 382

Query: 301 YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG 360
           YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG
Sbjct: 383 YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG 442

Query: 361 LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH 420
           LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH
Sbjct: 443 LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH 502

Query: 421 SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR 480
           SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR
Sbjct: 503 SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR 562

Query: 481 I 482
           I
Sbjct: 563 I 563

[Close]

BLAST of Cmc03g0072171 vs. ExPASy TrEMBL
Match: A0A1S3CIG1 (pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103501324 PE=4 SV=1)

HSP 1 Score: 986.1 bits (2548), Expect = 5.2e-284
Identity = 481/481 (100.00%), Postives = 481/481 (100.00%), Query Frame = 0


Query: 1   MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ 60
           MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ
Sbjct: 1   MWLHLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHKQ 60

Query: 61  CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY 120
           CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY
Sbjct: 61  CEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKY 120

Query: 121 FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR 180
           FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR
Sbjct: 121 FSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNR 180

Query: 181 ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG 240
           ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG
Sbjct: 181 ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEG 240

Query: 241 DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA 300
           DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA
Sbjct: 241 DVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEA 300

Query: 301 YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG 360
           YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG
Sbjct: 301 YKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNG 360

Query: 361 LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH 420
           LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH
Sbjct: 361 LCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPH 420

Query: 421 SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR 480
           SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR
Sbjct: 421 SDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR 480

Query: 481 I 482
           I
Sbjct: 481 I 481

[Close]

BLAST of Cmc03g0072171 vs. ExPASy TrEMBL
Match: A0A0A0K8U0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014780 PE=4 SV=1)

HSP 1 Score: 929.9 bits (2402), Expect = 4.4e-267
Identity = 456/482 (94.61%), Postives = 466/482 (96.68%), Query Frame = 0


Query: 1   MWLHLLRPGNYRTIETV-AAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTLITNINHK 60
           MW HLLRP NYRTIETV AAHVAR +PLL NLISSSSSLYQPHLNVHNESK LITN+ H+
Sbjct: 1   MWQHLLRPCNYRTIETVAAAHVARKSPLLRNLISSSSSLYQPHLNVHNESKFLITNVKHE 60

Query: 61  QCEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSK 120
           QCEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSK
Sbjct: 61  QCEDQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSK 120

Query: 121 YFSLIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLN 180
           YFSLIDDLLLSFKSR YPVTPTAFSYIIKIYGEADLPDKALKVFYTMI+FGCTPSSKQLN
Sbjct: 121 YFSLIDDLLLSFKSRRYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIDFGCTPSSKQLN 180

Query: 181 RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFE 240
           RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAY LFNKMFE
Sbjct: 181 RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFE 240

Query: 241 GDVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKE 300
            +VIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKL+E
Sbjct: 241 RNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLRE 300

Query: 301 AYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTN 360
           AYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTN
Sbjct: 301 AYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTN 360

Query: 361 GLCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAP 420
           GLCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFH++GR+ ESCSVLE MLK GKAP
Sbjct: 361 GLCDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHSIGRIHESCSVLEDMLKRGKAP 420

Query: 421 HSDTWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSR 480
           HSDTWEIIISGICEVEDT KFCE+ EKILKKDVRRDTRIVEAGTGLGEYLIRKLQAS SR
Sbjct: 421 HSDTWEIIISGICEVEDTAKFCEVWEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASISR 480

Query: 481 RI 482
           RI
Sbjct: 481 RI 482

[Close]

BLAST of Cmc03g0072171 vs. ExPASy TrEMBL
Match: A0A6J1EXV3 (pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111439286 PE=4 SV=1)

HSP 1 Score: 879.0 bits (2270), Expect = 8.9e-252
Identity = 428/478 (89.54%), Postives = 449/478 (93.93%), Query Frame = 0


Query: 4   HLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTL-ITNINHKQCE 63
           HLLRP NY+T+ETVA H+A   PLLHN ISSSSSLYQP LNVHNE KTL  TNINHK  E
Sbjct: 4   HLLRPCNYKTLETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLSATNINHKHLE 63

Query: 64  DQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFS 123
            QPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSS LVLILKLGRSKYFS
Sbjct: 64  QQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFS 123

Query: 124 LIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRIL 183
           LIDDLLLSFKSRGYP++PT FSYIIKIYGEADLPDKALK FYTMIEFGCTPSSKQLNRIL
Sbjct: 124 LIDDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRIL 183

Query: 184 EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEGDV 243
           EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNIL+R FCWNG++SIAY LFNKMF+ DV
Sbjct: 184 EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILMRVFCWNGDLSIAYTLFNKMFKRDV 243

Query: 244 IPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYK 303
           +PDVE+YR LMQGLCRKNQV GAVDLLEDMLNKGY+PDTLSYATLLNSLCRKKKL+EAYK
Sbjct: 244 VPDVESYRILMQGLCRKNQVIGAVDLLEDMLNKGYVPDTLSYATLLNSLCRKKKLREAYK 303

Query: 304 LLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLC 363
           LLCRMKVKGCNPD+AHYNTVI GFCREGRALDACKILEDMQSN CLPNLVSY+SLTNGLC
Sbjct: 304 LLCRMKVKGCNPDVAHYNTVITGFCREGRALDACKILEDMQSNRCLPNLVSYQSLTNGLC 363

Query: 364 DQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSD 423
           DQGMFELAK YVEEMTLKGF PHFSVIH LVKGF NVGR+D+SCSVLE MLKHGKAPHS+
Sbjct: 364 DQGMFELAKDYVEEMTLKGFCPHFSVIHTLVKGFINVGRIDDSCSVLEDMLKHGKAPHSE 423

Query: 424 TWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR 481
           TWE+IISG+CEVEDTVK CEILEKILKKDVRRDTRIVEAG+GLGEYLIRKLQASKSRR
Sbjct: 424 TWEMIISGVCEVEDTVKLCEILEKILKKDVRRDTRIVEAGSGLGEYLIRKLQASKSRR 481

[Close]

BLAST of Cmc03g0072171 vs. ExPASy TrEMBL
Match: A0A6J1ICW5 (pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111472648 PE=4 SV=1)

HSP 1 Score: 878.6 bits (2269), Expect = 1.2e-251
Identity = 431/478 (90.17%), Postives = 450/478 (94.14%), Query Frame = 0


Query: 4   HLLRPGNYRTIETVAAHVARNAPLLHNLISSSSSLYQPHLNVHNESKTL-ITNINHKQCE 63
           HLLRP NY+TIETVA H+A   PLLHN ISSSSSLYQP LNVHNE KTL  TNINHK  E
Sbjct: 4   HLLRPCNYKTIETVAVHLAPKTPLLHNSISSSSSLYQPDLNVHNELKTLNDTNINHKHLE 63

Query: 64  DQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFS 123
           +QPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSS LVLILKLGRSKYFS
Sbjct: 64  EQPDFSIGSPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSFLVLILKLGRSKYFS 123

Query: 124 LIDDLLLSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRIL 183
           LI+DLLLSFKSRGYP++PT FSYIIKIYGEADLPDKALK FYTMIEFGCTPSSKQLNRIL
Sbjct: 124 LINDLLLSFKSRGYPLSPTVFSYIIKIYGEADLPDKALKTFYTMIEFGCTPSSKQLNRIL 183

Query: 184 EILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEGDV 243
           EILVSHR+FIRPAFDLFKNARHHGVLPNTKSYNIL+RAFCWNG++SIAY LFNKMF+ DV
Sbjct: 184 EILVSHRDFIRPAFDLFKNARHHGVLPNTKSYNILMRAFCWNGDLSIAYTLFNKMFKRDV 243

Query: 244 IPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYK 303
           IPDVE+YR LMQGLCRKNQV GAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKL+EAYK
Sbjct: 244 IPDVESYRILMQGLCRKNQVIGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYK 303

Query: 304 LLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLC 363
           LLCRMKVKGCNPD+AHYNTVI GFCREGRALDACKILEDMQ NGCLPNLVSY+SLTNGLC
Sbjct: 304 LLCRMKVKGCNPDVAHYNTVITGFCREGRALDACKILEDMQLNGCLPNLVSYQSLTNGLC 363

Query: 364 DQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSD 423
           DQGMFELAK YVEEMTL GF PHFSVIH LVKGF NVGR+D+SCSVLE MLKHGKAPHS+
Sbjct: 364 DQGMFELAKDYVEEMTLNGFCPHFSVIHTLVKGFINVGRIDDSCSVLEDMLKHGKAPHSE 423

Query: 424 TWEIIISGICEVEDTVKFCEILEKILKKDVRRDTRIVEAGTGLGEYLIRKLQASKSRR 481
           TWEIIISGICEVEDTVK CEILEKILKKDVRRDTRIVEAG+GLGEYLIRKLQASKSRR
Sbjct: 424 TWEIIISGICEVEDTVKLCEILEKILKKDVRRDTRIVEAGSGLGEYLIRKLQASKSRR 481

[Close]

BLAST of Cmc03g0072171 vs. TAIR 10
Match: AT4G01400.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink). )

HSP 1 Score: 552.7 bits (1423), Expect = 2.8e-157
Identity = 262/446 (58.74%), Postives = 341/446 (76.46%), Query Frame = 0


Query: 32  ISSSSSLYQPHLNVHNESKTLITNINHKQCEDQPDFSIGSPCRVQKLIASQSDPLLAKEI 91
           +S+SS       + H   K +++N         P   IGSP RVQKLIASQSDPLLAKEI
Sbjct: 20  LSTSSRFLFYSSSEHEARKPIVSN---------PKSPIGSPTRVQKLIASQSDPLLAKEI 79

Query: 92  FDYACRQPHFRPSSSSLLVLILKLGRSKYFSLIDDLLLSFKSRGYPVTPTAFSYIIKIYG 151
           FDYA +QP+FR S SS L+LILKLGR +YF+LIDD+L   +S GYP+T   F+Y+IK+Y 
Sbjct: 80  FDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYA 139

Query: 152 EADLPDKALKVFYTMIEFGCTPSSKQLNRILEILVSHRNFIRPAFDLFKNARHHGVLPNT 211
           EA LP+K L  FY M+EF  TP  K LNRIL++LVSHR +++ AF+LFK++R HGV+PNT
Sbjct: 140 EAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNT 199

Query: 212 KSYNILIRAFCWNGNISIAYKLFNKMFEGDVIPDVETYRTLMQGLCRKNQVNGAVDLLED 271
           +SYN+L++AFC N ++SIAY+LF KM E DV+PDV++Y+ L+QG CRK QVNGA++LL+D
Sbjct: 200 RSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDD 259

Query: 272 MLNKGYIPDTLSYATLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIAHYNTVIMGFCREGR 331
           MLNKG++PD LSY TLLNSLCRK +L+EAYKLLCRMK+KGCNPD+ HYNT+I+GFCRE R
Sbjct: 260 MLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDR 319

Query: 332 ALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYVEEMTLKGFYPHFSVIHA 391
           A+DA K+L+DM SNGC PN VSY +L  GLCDQGMF+  K Y+EEM  KGF PHFSV + 
Sbjct: 320 AMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNC 379

Query: 392 LVKGFHNVGRMDESCSVLEGMLKHGKAPHSDTWEIIISGICEVEDTVKFCEILEKILKKD 451
           LVKGF + G+++E+C V+E ++K+G+  HSDTWE++I  IC  +++ K    LE  +K++
Sbjct: 380 LVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNEDESEKIKLFLEDAVKEE 439

Query: 452 VRRDTRIVEAGTGLGEYLIRKLQASK 478
           +  DTRIV+ G GLG YL  KLQ  +
Sbjct: 440 ITGDTRIVDVGIGLGSYLSSKLQMKR 456

[Close]

BLAST of Cmc03g0072171 vs. TAIR 10
Match: AT4G01400.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink). )

HSP 1 Score: 383.3 bits (983), Expect = 3.0e-106
Identity = 198/431 (45.94%), Postives = 267/431 (61.95%), Query Frame = 0


Query: 32  ISSSSSLYQPHLNVHNESKTLITNINHKQCEDQPDFSIGSPCRVQKLIASQSDPLLAKEI 91
           +S+SS       + H   K +++N         P   IGSP RVQKLIASQSDPLLAKEI
Sbjct: 20  LSTSSRFLFYSSSEHEARKPIVSN---------PKSPIGSPTRVQKLIASQSDPLLAKEI 79

Query: 92  FDYACRQPHFRPSSSSLLVLILKLGRSKYFSLIDDLLLSFKSRGYPVTPTAFSYIIKIYG 151
           FDYA +QP+FR S SS L+LILKLGR +YF+LIDD+L   +S GYP+T   F+Y+IK+Y 
Sbjct: 80  FDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVYA 139

Query: 152 EADLPDKALKVFYTMIEFGCTPSSKQLNRILEILVSHRNFIRPAFDLFKNARHHGVLPNT 211
           EA LP+K L  FY M+EF  TP  K LNRIL++LVSHR +++ AF+LFK++R HGV+PNT
Sbjct: 140 EAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNT 199

Query: 212 KSYNILIRAFCWNGNISIAYKLFNKMFEGDVIPDVETYRTLMQGLCRKNQVNGAVDLLED 271
           +SYN+L++AFC N ++SIAY+LF KM E DV+PDV++Y+ L+QG CRK QVNGA++LL+D
Sbjct: 200 RSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDD 259

Query: 272 MLNKGYIPDTLSYATLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIAHYNTVIMGFCREGR 331
           MLNKG++PD                                                   
Sbjct: 260 MLNKGFVPD--------------------------------------------------- 319

Query: 332 ALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYVEEMTLKGFYPHFSVIHA 391
                                   +L  GLCDQGMF+  K Y+EEM  KGF PHFSV + 
Sbjct: 320 -----------------------RTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNC 367

Query: 392 LVKGFHNVGRMDESCSVLEGMLKHGKAPHSDTWEIIISGICEVEDTVKFCEILEKILKKD 451
           LVKGF + G+++E+C V+E ++K+G+  HSDTWE++I  IC  +++ K    LE  +K++
Sbjct: 380 LVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNEDESEKIKLFLEDAVKEE 367

Query: 452 VRRDTRIVEAG 463
           +  DTRIV+ G
Sbjct: 440 ITGDTRIVDVG 367

[Close]

BLAST of Cmc03g0072171 vs. TAIR 10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 212.6 bits (540), Expect = 6.9e-55
Identity = 118/372 (31.72%), Postives = 195/372 (52.42%), Query Frame = 0


Query: 71  SPCRVQKLIASQSDPLLAKEIFDYACRQ--PHFRPSSSSLLVLILKLGRSKYFSLIDDLL 130
           +P +V KL+ ++ D   +  +FD A  +    +    SS   ++L+L  +  F   +DL+
Sbjct: 15  TPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKAAEDLI 74

Query: 131 LSFKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRILEILVSH 190
           +  K     V+      I + YG    P  +L+VF+ M +F C PS K    +L ILV  
Sbjct: 75  VRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILV-E 134

Query: 191 RNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWN-GNISIAYKLFNKMFEGDVIPDVE 250
            N +  AF  +KN R  G+ P   S N+LI+A C N G +    K+F +M +    PD  
Sbjct: 135 ENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSY 194

Query: 251 TYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYKLLCRM 310
           TY TL+ GLCR  +++ A  L  +M+ K   P  ++Y +L+N LC  K + EA + L  M
Sbjct: 195 TYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEM 254

Query: 311 KVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMF 370
           K KG  P++  Y++++ G C++GR+L A ++ E M + GC PN+V+Y +L  GLC +   
Sbjct: 255 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 314

Query: 371 ELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSDTWEI- 430
           + A   ++ M L+G  P   +   ++ GF  + +  E+ + L+ M+  G  P+  TW I 
Sbjct: 315 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIH 374

Query: 431 ------IISGIC 433
                 ++ G+C
Sbjct: 375 VKTSNEVVRGLC 385

[Close]

BLAST of Cmc03g0072171 vs. TAIR 10
Match: AT4G20090.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 196.4 bits (498), Expect = 5.1e-50
Identity = 112/382 (29.32%), Postives = 202/382 (52.88%), Query Frame = 0


Query: 71  SPCRVQKLIASQSDPLLAKEIFDYACRQPHFRPSSSSLLVLILKLGRSKYFSLIDDLLLS 130
           SP    +++ +  +  +++++F  A +   F+   S+L  +I     S  F  ++ LL  
Sbjct: 43  SPNPSMEVVENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSR 102

Query: 131 FKSRGYPVTPTAFSYIIKIYGEADLPDKALKVFYTMI-EFGCTPSSKQLNRILEILVSHR 190
            +     +   +F  + + YG+A LPDKA+ +F+ M+ EF C  S K  N +L ++++  
Sbjct: 103 IRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEG 162

Query: 191 NFIR--PAFDLFKNAR-HHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEGDVIPDV 250
            + R    +D   N+  +  + PN  S+N++I+A C    +  A ++F  M E   +PD 
Sbjct: 163 LYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDG 222

Query: 251 ETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYKLLCR 310
            TY TLM GLC++ +++ AV LL++M ++G  P  + Y  L++ LC+K  L    KL+  
Sbjct: 223 YTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDN 282

Query: 311 MKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGM 370
           M +KGC P+   YNT+I G C +G+   A  +LE M S+ C+PN V+Y +L NGL  Q  
Sbjct: 283 MFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRR 342

Query: 371 FELAKGYVEEMTLKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSDTWEI 430
              A   +  M  +G++ +  +   L+ G    G+ +E+ S+   M + G  P+   + +
Sbjct: 343 ATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSV 402

Query: 431 IISGICEVEDTVKFCEILEKIL 449
           ++ G+C      +  EIL +++
Sbjct: 403 LVDGLCREGKPNEAKEILNRMI 424

[Close]

BLAST of Cmc03g0072171 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 196.4 bits (498), Expect = 5.1e-50
Identity = 107/318 (33.65%), Postives = 169/318 (53.14%), Query Frame = 0


Query: 139 TPTAFSYIIKIYGEADLPDKALKVFYTMIEFGCTPSSKQLNRILEILVSHRNFIRPAFDL 198
           T + F  ++K Y    L DKAL + +     G  P     N +L+  +  +  I  A ++
Sbjct: 133 TSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENV 192

Query: 199 FKNARHHGVLPNTKSYNILIRAFCWNGNISIAYKLFNKMFEGDVIPDVETYRTLMQGLCR 258
           FK      V PN  +YNILIR FC+ GNI +A  LF+KM     +P+V TY TL+ G C+
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252

Query: 259 KNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIAH 318
             +++    LL  M  KG  P+ +SY  ++N LCR+ ++KE   +L  M  +G + D   
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVT 312

Query: 319 YNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYVEEMT 378
           YNT+I G+C+EG    A  +  +M  +G  P++++Y SL + +C  G    A  ++++M 
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372

Query: 379 LKGFYPHFSVIHALVKGFHNVGRMDESCSVLEGMLKHGKAPHSDTWEIIISGIC---EVE 438
           ++G  P+      LV GF   G M+E+  VL  M  +G +P   T+  +I+G C   ++E
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432

Query: 439 DTVKFCE-ILEKILKKDV 453
           D +   E + EK L  DV
Sbjct: 433 DAIAVLEDMKEKGLSPDV 450

The following BLAST results are available for this feature:

BLAST of Cmc03g0072171 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035033.1	1.1e-283	100.00	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK02366...	[more]
XP_008463091.1	1.1e-283	100.00	PREDICTED: pentatricopeptide repeat-containing protein At4g01400, mitochondrial-...	[more]
XP_004138384.1	9.1e-267	94.61	pentatricopeptide repeat-containing protein At4g01400, mitochondrial [Cucumis sa...	[more]
XP_038886671.1	6.8e-254	90.40	pentatricopeptide repeat-containing protein At4g01400, mitochondrial [Benincasa ...	[more]
KAG6592265.1	3.7e-252	89.75	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of Cmc03g0072171 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LDU5	4.0e-156	58.74	Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidop...	[more]
Q9FNL2	9.7e-54	31.72	Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX...	[more]
O49436	7.2e-49	29.32	Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX...	[more]
Q9FIX3	7.2e-49	33.65	Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX...	[more]
Q9LQQ1	5.7e-46	30.08	Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidop...	[more]

BLAST of Cmc03g0072171 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWW3	5.2e-284	100.00	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CIG1	5.2e-284	100.00	pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like OS=Cuc...	[more]
A0A0A0K8U0	4.4e-267	94.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014780 PE=4 SV=1	[more]
A0A6J1EXV3	8.9e-252	89.54	pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like OS=Cuc...	[more]
A0A6J1ICW5	1.2e-251	90.17	pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like OS=Cuc...	[more]

BLAST of Cmc03g0072171 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01400.3	2.8e-157	58.74	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G01400.1	3.0e-106	45.94	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G46100.1	6.9e-55	31.72	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G20090.1	5.1e-50	29.32	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G39710.1	5.1e-50	33.65	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 248..281 e-value: 1.4E-7 score: 29.2 coord: 352..384 e-value: 1.9E-4 score: 19.4 coord: 213..246 e-value: 2.3E-5 score: 22.3 coord: 143..174 e-value: 3.5E-5 score: 21.7 coord: 319..350 e-value: 4.4E-9 score: 34.0 coord: 283..316 e-value: 2.0E-8 score: 31.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 314..363 e-value: 1.5E-13 score: 50.8 coord: 209..258 e-value: 3.1E-15 score: 56.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 143..171 e-value: 0.0022 score: 18.1
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 275..308 e-value: 9.2E-9 score: 34.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 139..173 score: 9.766576
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 280..314 score: 12.276713
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 210..244 score: 11.366925
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 245..279 score: 12.24383
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 315..349 score: 12.298636
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 350..384 score: 10.369448
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 298..465 e-value: 1.9E-32 score: 115.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 175..297 e-value: 1.7E-30 score: 107.7
None	No IPR available	PANTHER	PTHR47942:SF2	OS09G0532800 PROTEIN	coord: 56..472
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 56..472
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 140..324

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0072171.1	Cmc03g0072171.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0000373	Group II intron splicing
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
biological_process	GO:0000963	mitochondrial RNA processing
biological_process	GO:0015031	protein transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0070939	Dsl1/NZR complex
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005515	protein binding