Cmc03g0071241 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0071241
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr03: 17428433 .. 17429392 (+)
RNA-Seq Expression	Cmc03g0071241
Synteny	Cmc03g0071241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTATTTAAGTTGTAAAGGGTACTCTAGAGGCGAAGCTAACAAAACTCTATTTATTCACAGAACAACTAATCAACTCATAGTTGCTCAAATCTATGTTAATGATATCATATTTGGAGGTTCTCCTCAAGATCTTGTTACTAACTTCATAGATATCATGAAACCAGAATTTGAGATGAGCATGGTTGGAGAACTCTCATGTTTTCTGGGGCTTCAAATCAAGCAAAAGAGTGAAGGTATATTCACATCACAAGAAAAGTATGCAAAGAATATAATTAAAAAGTTTGGATTAGAACAGTCTCGTCACAAGAGGACTCCAGCTGTGACACATGTTAAAATTACTAAAGATACTGAGGGTGCAAGAGCAGATCACAAACTTTACATAAGTATAATCGGTAACTTATTGTATTTAACTGCCAATTGACCTGACATAACTTATGTCATTGGAAAATGTGCCCGTTATCAGGCTGATCCTCGAACATCAAATTTAGAGGCTATTAAACAGATTCTCAAGTATGTTCATGGGACAAGTGACTTTGGAATTATGTATTCCTATGACAGGACTTCTACTTTGGTTCGATATTGTGATGCTGATTGGGCAGGTTCTTCTGATGATAGGAAGAGCACCTCTAGAGGTTGTTTCTTTCTAGGGAACAATCTTATCTCTTGGTTCAGTAAGAAACAAAATTTTGTTTCTTTGTCTACAACTGAAGCTGAATACATAGCAGCAGGGAGTGCTTGTACACAGTTGATCTGGATGAAGAATATGTTGCATGAGTATGGGTTCACACAAGATATCATGACTTTATATTGTGCTAATATGAGTGTCATTGATATATCAAAAAATCCTGTTCAATATAGTCAAACCAAACATATTAATATTAGGCATCATTTTATCCGAGAACTTGTTGAAAATAAAATTATTAAACTTGATCATATTCGTCGAATGTTCAATTAG

mRNA sequence

ATGATTTATTTAAGTTGTAAAGGGTACTCTAGAGGCGAAGCTAACAAAACTCTATTTATTCACAGAACAACTAATCAACTCATAGTTGCTCAAATCTATGTTAATGATATCATATTTGGAGGTTCTCCTCAAGATCTTGTTACTAACTTCATAGATATCATGAAACCAGAATTTGAGATGAGCATGGTTGGAGAACTCTCATGTTTTCTGGGGCTTCAAATCAAGCAAAAGAGTGAAGGTATATTCACATCACAAGAAAAGTATGCAAAGAATATAATTAAAAAGTTTGGATTAGAACAGTCTCGTCACAAGAGGACTCCAGCTGTGACACATGTTAAAATTACTAAAGATACTGAGGGTGCAAGAGCAGATCACAAACTTTACATAAGTATAATCGGTTCTTCTGATGATAGGAAGAGCACCTCTAGAGGTTGTTTCTTTCTAGGGAACAATCTTATCTCTTGGTTCAGTAAGAAACAAAATTTTGTTTCTTTGTCTACAACTGAAGCTGAATACATAGCAGCAGGGAGTGCTTGTACACAGTTGATCTGGATGAAGAATATGTTGCATGAGTATGGGTTCACACAAGATATCATGACTTTATATTGTGCTAATATGAGTGTCATTGATATATCAAAAAATCCTGTTCAATATAGTCAAACCAAACATATTAATATTAGGCATCATTTTATCCGAGAACTTGTTGAAAATAAAATTATTAAACTTGATCATATTCGTCGAATGTTCAATTAG

Coding sequence (CDS)

ATGATTTATTTAAGTTGTAAAGGGTACTCTAGAGGCGAAGCTAACAAAACTCTATTTATTCACAGAACAACTAATCAACTCATAGTTGCTCAAATCTATGTTAATGATATCATATTTGGAGGTTCTCCTCAAGATCTTGTTACTAACTTCATAGATATCATGAAACCAGAATTTGAGATGAGCATGGTTGGAGAACTCTCATGTTTTCTGGGGCTTCAAATCAAGCAAAAGAGTGAAGGTATATTCACATCACAAGAAAAGTATGCAAAGAATATAATTAAAAAGTTTGGATTAGAACAGTCTCGTCACAAGAGGACTCCAGCTGTGACACATGTTAAAATTACTAAAGATACTGAGGGTGCAAGAGCAGATCACAAACTTTACATAAGTATAATCGGTTCTTCTGATGATAGGAAGAGCACCTCTAGAGGTTGTTTCTTTCTAGGGAACAATCTTATCTCTTGGTTCAGTAAGAAACAAAATTTTGTTTCTTTGTCTACAACTGAAGCTGAATACATAGCAGCAGGGAGTGCTTGTACACAGTTGATCTGGATGAAGAATATGTTGCATGAGTATGGGTTCACACAAGATATCATGACTTTATATTGTGCTAATATGAGTGTCATTGATATATCAAAAAATCCTGTTCAATATAGTCAAACCAAACATATTAATATTAGGCATCATTTTATCCGAGAACTTGTTGAAAATAAAATTATTAAACTTGATCATATTCGTCGAATGTTCAATTAG

Protein sequence

MIYLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMSMVGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGARADHKLYISIIGSSDDRKSTSRGCFFLGNNLISWFSKKQNFVSLSTTEAEYIAAGSACTQLIWMKNMLHEYGFTQDIMTLYCANMSVIDISKNPVQYSQTKHINIRHHFIRELVENKIIKLDHIRRMFN

Homology

[Close]

BLAST of Cmc03g0071241 vs. NCBI nr
Match: TYK23188.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 345.9 bits (886), Expect = 2.9e-91
Identity = 184/314 (58.60%), Postives = 212/314 (67.52%), Query Frame = 0


Query: 2   IYLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMS 61
           +YL  KGYSRGE +KTLFIHR ++QL+VAQIYV+DIIFGG P DLV NFI+IM+ EFEMS
Sbjct: 56  VYLRGKGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMS 115

Query: 62  MVGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGA 121
           MVGELSCFLG QIKQK++ I  SQ+KYAKN+ KKFGLEQ+R+KRTPA THVK+T+D +GA
Sbjct: 116 MVGELSCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGA 175

Query: 122 RADHKLYISII------------------------------------------------- 181
             DHKLY SI+                                                 
Sbjct: 176 EVDHKLYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFG 235

Query: 182 --------------------GSSDDRKSTSRGCFFLGNNLISWFSKKQNFVSLSTTEAEY 241
                               G +DDRKSTS GCFFLGNNLI W SKKQN VSLSTTEAEY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 242 IAAGSACTQLIWMKNMLHEYGFTQDIMTLYCANMSVIDISKNPVQYSQTKHINIRHHFIR 247
           I AGS CTQLIWM+N+L EYGF Q  +TLY  NMS IDISKNPVQ+S+ KHI+IRHHFIR
Sbjct: 296 IVAGSGCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIR 355

[Close]

BLAST of Cmc03g0071241 vs. NCBI nr
Match: TYK18151.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 316.2 bits (809), Expect = 2.5e-82
Identity = 167/261 (63.98%), Postives = 199/261 (76.25%), Query Frame = 0


Query: 2   IYLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMS 61
           +YL  +GYSRGE +KTLFIHR ++QL+VAQIYV+DIIFGG PQDLV NFI+IM+PEFEMS
Sbjct: 56  VYLRGRGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQDLVNNFINIMQPEFEMS 115

Query: 62  MVGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGA 121
           MVGELSCFLGLQIKQK+ GIF  QEKYA+N++KKFGLEQ+R+KRTPA    K+TKDTEGA
Sbjct: 116 MVGELSCFLGLQIKQKNGGIFILQEKYARNMVKKFGLEQARNKRTPA---AKLTKDTEGA 175

Query: 122 RADHKLYISIIGS----SDDRKSTSR-----GCFFLGNNL-------ISWFSKKQNFVSL 181
             DHKLY SI+GS    +  R   +       C+     +       I   + +   + +
Sbjct: 176 DVDHKLYRSIVGSLLYLTASRPDIAYAVGICACYQADPRITHLEALDIVMLTGQVQLMIV 235

Query: 182 STTEAEYIAAGSACTQLIWMKNMLHEYGFTQDIMTLYCANMSVIDISKNPVQYSQTKHIN 241
              EAEYIAAGS CTQLIWMKNML EYGF QD MTLYC NMS IDISKN +Q+S+TKHI+
Sbjct: 236 KVAEAEYIAAGSGCTQLIWMKNMLLEYGFNQDTMTLYCDNMSAIDISKNSIQHSRTKHID 295

Query: 242 IRHHFIRELVENKIIKLDHIR 247
           IRHHFI+ELVE+K+IKLDHIR
Sbjct: 296 IRHHFIQELVEDKVIKLDHIR 313

[Close]

BLAST of Cmc03g0071241 vs. NCBI nr
Match: KAA0066740.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27888.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 312.4 bits (799), Expect = 3.6e-81
Identity = 171/286 (59.79%), Postives = 202/286 (70.63%), Query Frame = 0


Query: 2   IYLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMS 61
           +YL  KGYSRGE +KTLFIHR ++QL+VAQIYV+DIIFGG PQDLV NFI+IM+ EFEMS
Sbjct: 56  VYLRGKGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMS 115

Query: 62  MVGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGA 121
           MVGEL CFLGLQI+QK++ IF SQ+KYA+NI+KKFGLEQ+R+KRTPA THVK+TKD EGA
Sbjct: 116 MVGELLCFLGLQIRQKNDDIFISQKKYARNIVKKFGLEQARNKRTPATTHVKLTKDIEGA 175

Query: 122 RADHKLYISIIGS------SDDRKSTSRGCFF------------LGNNLISWFSKKQNF- 181
             DHKLY SI+GS      S    + + G +                 ++ +  +  +F 
Sbjct: 176 EVDHKLYRSIVGSLLYLTASRPDIAYAMGIYARYQVVPRITHLEAIKRILKYVHRTCDFG 235

Query: 182 --VSLSTT--------------------EAEYIAAGSACTQLIWMKNMLHEYGFTQDIMT 241
              S  TT                    EAEYIAAGS CTQLIWMKN+LHEYGF QD MT
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGSTDDRKIEAEYIAAGSGCTQLIWMKNVLHEYGFDQDTMT 295

Query: 242 LYCANMSVIDISKNPVQYSQTKHINIRHHFIRELVENKIIKLDHIR 247
           LYC NMS IDISKN VQ+S+TKHI+IRHHFIRE VE K+IKLDHIR
Sbjct: 296 LYCNNMSAIDISKNLVQHSRTKHIDIRHHFIREPVEEKVIKLDHIR 341

[Close]

BLAST of Cmc03g0071241 vs. NCBI nr
Match: KAA0066405.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK00880.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 303.9 bits (777), Expect = 1.3e-78
Identity = 166/288 (57.64%), Postives = 194/288 (67.36%), Query Frame = 0


Query: 2   IYLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMS 61
           +YL  KGYSRGE +KTLFI+R ++QL+V QIYV+DIIFGG PQDLV NFI+IM+ EF+MS
Sbjct: 56  VYLRGKGYSRGEIDKTLFIYRKSDQLLVTQIYVDDIIFGGFPQDLVNNFINIMQSEFKMS 115

Query: 62  MVGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGA 121
           MVGELSCFLGLQIKQ ++ IF SQEKY +N++KKFGLEQ+R+KRTPAVTHVK+TKDTE A
Sbjct: 116 MVGELSCFLGLQIKQNNDDIFISQEKYTRNMVKKFGLEQARNKRTPAVTHVKLTKDTESA 175

Query: 122 RADHKLYISIIGS------------------------------------------SD--D 181
             DHKLY SIIGS                                          SD   
Sbjct: 176 EVDHKLYRSIIGSLLYLTASRPDIAYVVGICARYQVDPCITHLVAVKILKYVHGTSDFGM 235

Query: 182 RKSTSRGCFFLGNNLISWFSKKQNFVSLSTTEAEYIAAGSACTQLIWMKNMLHEYGFTQD 241
             S       +G     W     +  + S  EAEYIAAGS CTQLIW KNML EYGF QD
Sbjct: 236 MYSYDTTLTLVGYCDADWEGSADDRKNTSEVEAEYIAAGSGCTQLIWTKNMLLEYGFDQD 295

Query: 242 IMTLYCANMSVIDISKNPVQYSQTKHINIRHHFIRELVENKIIKLDHI 246
            MTLYC NMS IDIS NPVQ+S+T+HI+IRHHFI ELV++K+IKLDHI
Sbjct: 296 TMTLYCDNMSAIDISNNPVQHSRTRHIDIRHHFIPELVKDKVIKLDHI 343

[Close]

BLAST of Cmc03g0071241 vs. NCBI nr
Match: AAO73529.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 300.8 bits (769), Expect = 1.1e-77
Identity = 155/312 (49.68%), Postives = 199/312 (63.78%), Query Frame = 0


Query: 3    YLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMSM 62
            +L+ +GY +G  +KTLF+ +    L++AQIYV+DI+FGG   +++ +F+  M+ EFEMS+
Sbjct: 1232 FLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSL 1291

Query: 63   VGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGAR 122
            VGEL+ FLGLQ+KQ  + IF SQ KYAKNI+KKFG+E + HKRTPA TH+K++KD  G  
Sbjct: 1292 VGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTS 1351

Query: 123  ADHKLYISII-------------------------------------------------- 182
             D  LY S+I                                                  
Sbjct: 1352 VDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGI 1411

Query: 183  -------------------GSSDDRKSTSRGCFFLGNNLISWFSKKQNFVSLSTTEAEYI 242
                               GS+DDRKSTS GCF+LGNNLISWFSKKQN VSLST EAEYI
Sbjct: 1412 MYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYI 1471

Query: 243  AAGSACTQLIWMKNMLHEYGFTQDIMTLYCANMSVIDISKNPVQYSQTKHINIRHHFIRE 246
            AAGS+C+QL+WMK ML EY   QD+MTLYC NMS I+ISKNPVQ+S+TKHI+IRHH+IRE
Sbjct: 1472 AAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRE 1531

[Close]

BLAST of Cmc03g0071241 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-21
Identity = 50/110 (45.45%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 133  GSSDDRKSTSRGCFFLGNNLISWFSKKQNFVSLSTTEAEYIAAGSACTQLIWMKNMLHEY 192
            G  D+RKS++   F      ISW SK Q  V+LSTTEAEYIAA     ++IW+K  L E 
Sbjct: 1185 GDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQEL 1244

Query: 193  GFTQDIMTLYCANMSVIDISKNPVQYSQTKHINIRHHFIRELVENKIIKL 243
            G  Q    +YC + S ID+SKN + +++TKHI++R+H+IRE+V+++ +K+
Sbjct: 1245 GLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKV 1294

[Close]

BLAST of Cmc03g0071241 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.8e-20
Identity = 74/313 (23.64%), Postives = 133/313 (42.49%), Query Frame = 0


Query: 3    YLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMSM 62
            YL   G+    ++ +LF+ +    +I   +YV+DI+  G+   L+ + +D +   F +  
Sbjct: 1103 YLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKE 1162

Query: 63   VGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGAR 122
              +L  FLG++ K+  +G+  SQ +Y  +++ +  +  ++   TP  T  K+T  +    
Sbjct: 1163 HEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKL 1222

Query: 123  ADHKLYISIIGS------------------------------------------------ 182
             D   Y  I+GS                                                
Sbjct: 1223 PDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGI 1282

Query: 183  ---------------------SDDRKSTSRGCFFLGNNLISWFSKKQNFVSLSTTEAEYI 242
                                 +DD  ST+    +LG++ ISW SKKQ  V  S+TEAEY 
Sbjct: 1283 FLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYR 1342

Query: 243  AAGSACTQLIWMKNMLHEYGF-TQDIMTLYCANMSVIDISKNPVQYSQTKHINIRHHFIR 246
            +  +  ++L W+ ++L E G        +YC N+    +  NPV +S+ KHI + +HFIR
Sbjct: 1343 SVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIR 1402

[Close]

BLAST of Cmc03g0071241 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 96.3 bits (238), Expect = 5.3e-19
Identity = 74/294 (25.17%), Postives = 127/294 (43.20%), Query Frame = 0


Query: 25   NQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMSMVGELSCFLGLQIKQKSEGIFTS 84
            N+ I   +YV+D++        + NF   +  +F M+ + E+  F+G++I+ + + I+ S
Sbjct: 1079 NENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLS 1138

Query: 85   QEKYAKNIIKKFGLEQSRHKRTP---AVTHVKITKDTE-----------------GARAD 144
            Q  Y K I+ KF +E      TP    + +  +  D +                   R D
Sbjct: 1139 QSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPD 1198

Query: 145  HKLYISII---------------------------------------------------G 204
                ++I+                                                   G
Sbjct: 1199 LTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAG 1258

Query: 205  SSDDRKSTSRGCFFLGN-NLISWFSKKQNFVSLSTTEAEYIAAGSACTQLIWMKNMLHEY 246
            S  DRKST+   F + + NLI W +K+QN V+ S+TEAEY+A   A  + +W+K +L   
Sbjct: 1259 SEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSI 1318

[Close]

BLAST of Cmc03g0071241 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-18
Identity = 73/313 (23.32%), Postives = 130/313 (41.53%), Query Frame = 0


Query: 3    YLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMSM 62
            YL   G+    ++ +LF+ +    ++   +YV+DI+  G+   L+ N +D +   F +  
Sbjct: 1120 YLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKD 1179

Query: 63   VGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGAR 122
              EL  FLG++ K+   G+  SQ +Y  +++ +  +  ++   TP     K++  +    
Sbjct: 1180 HEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKL 1239

Query: 123  ADHKLYISIIGS------------------------------------------------ 182
             D   Y  I+GS                                                
Sbjct: 1240 TDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGI 1299

Query: 183  ---------------------SDDRKSTSRGCFFLGNNLISWFSKKQNFVSLSTTEAEYI 242
                                  DD  ST+    +LG++ ISW SKKQ  V  S+TEAEY 
Sbjct: 1300 FLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYR 1359

Query: 243  AAGSACTQLIWMKNMLHEYGF-TQDIMTLYCANMSVIDISKNPVQYSQTKHINIRHHFIR 246
            +  +  +++ W+ ++L E G        +YC N+    +  NPV +S+ KHI I +HFIR
Sbjct: 1360 SVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIR 1419

[Close]

BLAST of Cmc03g0071241 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-11
Identity = 61/221 (27.60%), Postives = 87/221 (39.37%), Query Frame = 0


Query: 32  IYVNDIIFGGSPQDLVTNFIDIMKPEFEMSMVGELSCFLGLQIKQKSEGIFTSQEKYAKN 91
           +YV+DI+  GS   L+   I  +   F M  +G +  FLG+QIK    G+F SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 92  IIKKFGLEQSRHKRTP-------------------------AVTHVKITKDT-------- 151
           I+   G+   +   TP                         A+ ++ +T+          
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIV 124

Query: 152 -----EGARAD----------------HKLYI--------------SIIGSSDDRKSTSR 185
                E   AD                H LYI                 G +  R+ST+ 
Sbjct: 125 CQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTG 184

[Close]

BLAST of Cmc03g0071241 vs. ExPASy TrEMBL
Match: A0A5D3DI97 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002180 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.4e-91
Identity = 184/314 (58.60%), Postives = 212/314 (67.52%), Query Frame = 0


Query: 2   IYLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMS 61
           +YL  KGYSRGE +KTLFIHR ++QL+VAQIYV+DIIFGG P DLV NFI+IM+ EFEMS
Sbjct: 56  VYLRGKGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPHDLVNNFINIMQSEFEMS 115

Query: 62  MVGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGA 121
           MVGELSCFLG QIKQK++ I  SQ+KYAKN+ KKFGLEQ+R+KRTPA THVK+T+D +GA
Sbjct: 116 MVGELSCFLGFQIKQKNDDIIISQKKYAKNMAKKFGLEQARNKRTPAATHVKLTRDNDGA 175

Query: 122 RADHKLYISII------------------------------------------------- 181
             DHKLY SI+                                                 
Sbjct: 176 EVDHKLYRSIVSNLLYLTASRPDIAYAVGICARYQADPRISHLEAVKRILKYVHGTNDFG 235

Query: 182 --------------------GSSDDRKSTSRGCFFLGNNLISWFSKKQNFVSLSTTEAEY 241
                               G +DDRKSTS GCFFLGNNLI W SKKQN VSLSTTEAEY
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGLADDRKSTSGGCFFLGNNLIYWLSKKQNCVSLSTTEAEY 295

Query: 242 IAAGSACTQLIWMKNMLHEYGFTQDIMTLYCANMSVIDISKNPVQYSQTKHINIRHHFIR 247
           I AGS CTQLIWM+N+L EYGF Q  +TLY  NMS IDISKNPVQ+S+ KHI+IRHHFIR
Sbjct: 296 IVAGSGCTQLIWMENILDEYGFDQHTITLYSDNMSAIDISKNPVQHSRIKHIDIRHHFIR 355

[Close]

BLAST of Cmc03g0071241 vs. ExPASy TrEMBL
Match: A0A5D3D1M6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00830 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.2e-82
Identity = 167/261 (63.98%), Postives = 199/261 (76.25%), Query Frame = 0


Query: 2   IYLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMS 61
           +YL  +GYSRGE +KTLFIHR ++QL+VAQIYV+DIIFGG PQDLV NFI+IM+PEFEMS
Sbjct: 56  VYLRGRGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQDLVNNFINIMQPEFEMS 115

Query: 62  MVGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGA 121
           MVGELSCFLGLQIKQK+ GIF  QEKYA+N++KKFGLEQ+R+KRTPA    K+TKDTEGA
Sbjct: 116 MVGELSCFLGLQIKQKNGGIFILQEKYARNMVKKFGLEQARNKRTPA---AKLTKDTEGA 175

Query: 122 RADHKLYISIIGS----SDDRKSTSR-----GCFFLGNNL-------ISWFSKKQNFVSL 181
             DHKLY SI+GS    +  R   +       C+     +       I   + +   + +
Sbjct: 176 DVDHKLYRSIVGSLLYLTASRPDIAYAVGICACYQADPRITHLEALDIVMLTGQVQLMIV 235

Query: 182 STTEAEYIAAGSACTQLIWMKNMLHEYGFTQDIMTLYCANMSVIDISKNPVQYSQTKHIN 241
              EAEYIAAGS CTQLIWMKNML EYGF QD MTLYC NMS IDISKN +Q+S+TKHI+
Sbjct: 236 KVAEAEYIAAGSGCTQLIWMKNMLLEYGFNQDTMTLYCDNMSAIDISKNSIQHSRTKHID 295

Query: 242 IRHHFIRELVENKIIKLDHIR 247
           IRHHFI+ELVE+K+IKLDHIR
Sbjct: 296 IRHHFIQELVEDKVIKLDHIR 313

[Close]

BLAST of Cmc03g0071241 vs. ExPASy TrEMBL
Match: A0A5D3DWS6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00720 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.7e-81
Identity = 171/286 (59.79%), Postives = 202/286 (70.63%), Query Frame = 0


Query: 2   IYLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMS 61
           +YL  KGYSRGE +KTLFIHR ++QL+VAQIYV+DIIFGG PQDLV NFI+IM+ EFEMS
Sbjct: 56  VYLRGKGYSRGEIDKTLFIHRKSDQLLVAQIYVDDIIFGGFPQDLVNNFINIMQSEFEMS 115

Query: 62  MVGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGA 121
           MVGEL CFLGLQI+QK++ IF SQ+KYA+NI+KKFGLEQ+R+KRTPA THVK+TKD EGA
Sbjct: 116 MVGELLCFLGLQIRQKNDDIFISQKKYARNIVKKFGLEQARNKRTPATTHVKLTKDIEGA 175

Query: 122 RADHKLYISIIGS------SDDRKSTSRGCFF------------LGNNLISWFSKKQNF- 181
             DHKLY SI+GS      S    + + G +                 ++ +  +  +F 
Sbjct: 176 EVDHKLYRSIVGSLLYLTASRPDIAYAMGIYARYQVVPRITHLEAIKRILKYVHRTCDFG 235

Query: 182 --VSLSTT--------------------EAEYIAAGSACTQLIWMKNMLHEYGFTQDIMT 241
              S  TT                    EAEYIAAGS CTQLIWMKN+LHEYGF QD MT
Sbjct: 236 MMYSYDTTPTLVGYCDADWAGSTDDRKIEAEYIAAGSGCTQLIWMKNVLHEYGFDQDTMT 295

Query: 242 LYCANMSVIDISKNPVQYSQTKHINIRHHFIRELVENKIIKLDHIR 247
           LYC NMS IDISKN VQ+S+TKHI+IRHHFIRE VE K+IKLDHIR
Sbjct: 296 LYCNNMSAIDISKNLVQHSRTKHIDIRHHFIREPVEEKVIKLDHIR 341

[Close]

BLAST of Cmc03g0071241 vs. ExPASy TrEMBL
Match: A0A5D3BPB5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00390 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 6.2e-79
Identity = 166/288 (57.64%), Postives = 194/288 (67.36%), Query Frame = 0


Query: 2   IYLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMS 61
           +YL  KGYSRGE +KTLFI+R ++QL+V QIYV+DIIFGG PQDLV NFI+IM+ EF+MS
Sbjct: 56  VYLRGKGYSRGEIDKTLFIYRKSDQLLVTQIYVDDIIFGGFPQDLVNNFINIMQSEFKMS 115

Query: 62  MVGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGA 121
           MVGELSCFLGLQIKQ ++ IF SQEKY +N++KKFGLEQ+R+KRTPAVTHVK+TKDTE A
Sbjct: 116 MVGELSCFLGLQIKQNNDDIFISQEKYTRNMVKKFGLEQARNKRTPAVTHVKLTKDTESA 175

Query: 122 RADHKLYISIIGS------------------------------------------SD--D 181
             DHKLY SIIGS                                          SD   
Sbjct: 176 EVDHKLYRSIIGSLLYLTASRPDIAYVVGICARYQVDPCITHLVAVKILKYVHGTSDFGM 235

Query: 182 RKSTSRGCFFLGNNLISWFSKKQNFVSLSTTEAEYIAAGSACTQLIWMKNMLHEYGFTQD 241
             S       +G     W     +  + S  EAEYIAAGS CTQLIW KNML EYGF QD
Sbjct: 236 MYSYDTTLTLVGYCDADWEGSADDRKNTSEVEAEYIAAGSGCTQLIWTKNMLLEYGFDQD 295

Query: 242 IMTLYCANMSVIDISKNPVQYSQTKHINIRHHFIRELVENKIIKLDHI 246
            MTLYC NMS IDIS NPVQ+S+T+HI+IRHHFI ELV++K+IKLDHI
Sbjct: 296 TMTLYCDNMSAIDISNNPVQHSRTRHIDIRHHFIPELVKDKVIKLDHI 343

[Close]

BLAST of Cmc03g0071241 vs. ExPASy TrEMBL
Match: Q84VH6 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 5.2e-78
Identity = 155/312 (49.68%), Postives = 199/312 (63.78%), Query Frame = 0


Query: 3    YLSCKGYSRGEANKTLFIHRTTNQLIVAQIYVNDIIFGGSPQDLVTNFIDIMKPEFEMSM 62
            +L+ +GY +G  +KTLF+ +    L++AQIYV+DI+FGG   +++ +F+  M+ EFEMS+
Sbjct: 1232 FLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSL 1291

Query: 63   VGELSCFLGLQIKQKSEGIFTSQEKYAKNIIKKFGLEQSRHKRTPAVTHVKITKDTEGAR 122
            VGEL+ FLGLQ+KQ  + IF SQ KYAKNI+KKFG+E + HKRTPA TH+K++KD  G  
Sbjct: 1292 VGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTS 1351

Query: 123  ADHKLYISII-------------------------------------------------- 182
             D  LY S+I                                                  
Sbjct: 1352 VDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGI 1411

Query: 183  -------------------GSSDDRKSTSRGCFFLGNNLISWFSKKQNFVSLSTTEAEYI 242
                               GS+DDRKSTS GCF+LGNNLISWFSKKQN VSLST EAEYI
Sbjct: 1412 MYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYI 1471

Query: 243  AAGSACTQLIWMKNMLHEYGFTQDIMTLYCANMSVIDISKNPVQYSQTKHINIRHHFIRE 246
            AAGS+C+QL+WMK ML EY   QD+MTLYC NMS I+ISKNPVQ+S+TKHI+IRHH+IRE
Sbjct: 1472 AAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRE 1531

[Close]

BLAST of Cmc03g0071241 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 75.5 bits (184), Expect = 6.8e-14
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 136 DDRKSTSRGCFFLGNNLISWFSKKQNFVSLSTTEAEYIAAGSACTQLIWMKNMLHEYGFT 195
           D R+ST+  C FLG +LISW SKKQ  VS S+ EAEY A   A  +++W+     E    
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514

Query: 196 QDIMT-LYCANMSVIDISKNPVQYSQTKHINIRHHFIRE 234
               T L+C N + I I+ N V + +TKHI    H +RE
Sbjct: 515 LSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of Cmc03g0071241 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-12
Identity = 61/221 (27.60%), Postives = 87/221 (39.37%), Query Frame = 0


Query: 32  IYVNDIIFGGSPQDLVTNFIDIMKPEFEMSMVGELSCFLGLQIKQKSEGIFTSQEKYAKN 91
           +YV+DI+  GS   L+   I  +   F M  +G +  FLG+QIK    G+F SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 92  IIKKFGLEQSRHKRTP-------------------------AVTHVKITKDT-------- 151
           I+   G+   +   TP                         A+ ++ +T+          
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIV 124

Query: 152 -----EGARAD----------------HKLYI--------------SIIGSSDDRKSTSR 185
                E   AD                H LYI                 G +  R+ST+ 
Sbjct: 125 CQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTG 184

The following BLAST results are available for this feature:

BLAST of Cmc03g0071241 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23188.1	2.9e-91	58.60	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK18151.1	2.5e-82	63.98	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066740.1	3.6e-81	59.79	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK27888.1 gag-pol polyprotein [...	[more]
KAA0066405.1	1.3e-78	57.64	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK00880.1 gag-pol polyprotein [...	[more]
AAO73529.1	1.1e-77	49.68	gag-pol polyprotein [Glycine max]	[more]

BLAST of Cmc03g0071241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.6e-21	45.45	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	4.8e-20	23.64	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	5.3e-19	25.17	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.5e-18	23.32	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	3.1e-11	27.60	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc03g0071241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DI97	1.4e-91	58.60	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
A0A5D3D1M6	1.2e-82	63.98	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G...	[more]
A0A5D3DWS6	1.7e-81	59.79	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G...	[more]
A0A5D3BPB5	6.2e-79	57.64	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G...	[more]
Q84VH6	5.2e-78	49.68	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]

BLAST of Cmc03g0071241 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.8e-14	42.42	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.2e-12	27.60	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 7..108 e-value: 3.6E-16 score: 59.5
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 134..245
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 134..245
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 133..246 e-value: 2.66198E-57 score: 177.275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0071241.1	Cmc03g0071241.1	mRNA