Cmc03g0070791 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0070791
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr03: 16770010 .. 16773385 (+)
RNA-Seq Expression	Cmc03g0070791
Synteny	Cmc03g0070791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTTACAAAAAATCCTAAATTCCCGAAAAATTCACATAAAATACTAAAATTTTACCTCGATCTTCGGGGCGTTACAATAAAGAATCTTGAAATAATCGTTTAGATTGGATAGCCAAATCTAAACGATCGTGTACCAAATAATCTTGAAAAAATAAATGATCGTGTAAACAAATCTAAATGATCGTGTACCAAAAGAATCTTGAAAAAATTTGTTTAGCCAAATCTAAACGATCGTGAACCAAATTTTTAAAAACAAAATCGTTTAGACTTGGGGTAGCCAAATCAAAACGATGAAATCTACCAAATCTAAACGATCGTGTACCAACCAAATCTAAACCATCATGTACCAAATATATTATGCACGATGTCGACTACATGGTTGATCAGATATTTTTTGTATTCTTTCATTGTGGGCCTGTTGACTTTTTTCATTTTCAAAATTATTCTATATAGTGTAAATATTTTATCGCTTTGTTCAACTTTTGAAAAAATCCCTAATCTTTACCATTTACAAAGTCTTCCATCTGAAAAAATAAAAAATCATTAAAATTAATATTTACACGATCCAGTTTTATAATACATTGCATATTTGATTTGTTTAGGTCAATTAAGTTGGGTTGTGCTAAAATAGCATTATGTGGTACATGTTTAATAGTTCATGTTTAACTGATCTAATGTGGATACATAAATAAAAATTGAATTTCCTTTTATTTTCTACCTCTAACTTTTTAGGGTTTTTAAAATAGTTATGCATTAAAGTAAAAGATATACAACAGGATCTCTGTGCACAATGTTGGAAATAACTTATTGGGCTTGGCCCAAATAGAAAAGTAACAAAAATTGTCCCAAATTGATAAACCTTGAAGTGGGAAAAAGATATATAATCTCAAGTCTTGAAAGGTGACTACAAACTGAGTAAGTTGTGATAGTATAACCCTGTCCCACACACACGCCGCCGCCGTCGTCCGTTCGATCGGACGGGCGGGCTCAGCCAACTGCGCTTGCATGAAAAAAAGGAATATAATTTTATTTTCTATACCTTTTATTTTTGGCATTGGCAGCTATAGAGACACGTGTAATTGCGGTCGACTTCCTTGTTCAAACGTGGCGCACGTTCGCGTTATTCAACGTTCGACGTGCAACGTGTTTGTCCGACGTTTGCTCTCTGTCATATTTTTATGATATTTGCTCGCATCCTCTCTTTGCCGATAATCATTCTCTTCCACACTCTGCCTTCATCGCCTCTCTATAAATTGGATAGAAGTCCTTCCATCTTTCACACACCGAACATAATCACTTCGAGCTCTTCCTCTCTTCCTCTCATATTTCATACCTCTCTGTGTTCTGAGCATTTATAAAAGCCTTTGATTCTATTCCCTGTGCTTGTGAGTGCACATTAGTACTAGGAAGCTGTGTTAACCTTGGAGAGCAACCGACAAAACGATTAGCACCACGGTTAGCCAAACTTGCTTTCAGGACATTGGTTCGTCACGGCACAACAATTATCCTGATCGATAGTTTACCATCTTATCTAACAATCTGAAAGCAAGTATGTCGATCAAGACCTCCAACAAAATTCCACCTGACCTATCCAAACTTGAGCTACTTGATGGAATGAATTATCGTCGTTGGTCCCAAAACTTGTTGATCTTTTTTGAGCAACTAGAAGTTGATTATGTCCTCACCACAGATCTTTCGTCTTCAGATCCCTCAGCTATCACTTCAACATCTTCTGATCCAGAGTCATCTACGGGGCCTTCTGCTACTGCCACTATCGCTGACCAAGTAAAGAATGACCAAGTGATCGATCTTGAAAAATATGCAAAGGATAACAAGACCGTTCGTGGACATCTGTTAAACCATATGTCAGACCCGATGTTCGACCTGTTCGTAGCTCAAAAATCTGCCAAGGACATCTAGAGCACCCTAGAATCACAGTATGGAGGAGATGATGCTGGACGAAAGAAATATGTGGTTGGAAAATGGCTGTAGTTCCAGATGACTGACGACAAGCCAGTCATGGAACAAATACATGAGTACGAGAACCTGGTGGCGAACGTCCTATCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGCTGGAAAAGTTTCCTCCATCATGGAATGACTATCATAATCACCTCAAGCAAAAGAAGAAGGATCTGAAGTTTTAGGAACTCATCAATCACATGCGCACGGAAGAAGTCAACAAACTGAAAGATAAGTTGGCCTCCAAAAATTTAAATTCAATTAATGCTAACCTAGTCGAATCGTCTATTGTAAACAGATACAGAACCAAGCAGGAAAAAGGGCATAAGGGGAAAACTCAGAGAAAAAACAATTCAAGGCTTCTGGGGGACAAATTAAGAAGAAAAAGCTAATTTGTTATGTGTGCAGAAAGGAAGGACACAAATCATACCAATGTAACCAAAGAAAAGGGAGACCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAACAAGACAATGAGATCATAGCAGCCATAGTAGAGGCTAATCTGATAGAAAATAAGATGGACTGGATTCTCGATACTGGAGCCTCGAGACACTTCTACACCAATCGAGAACTTCTTCATGACTACGAAGACACTGTCGATGGAGAATGCGTGTTCATGGGAAACTCGCCACTGCAGGAGTGATGGGAAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTCTTAGTAATGTTCTATATGTCGCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGAGCCAAGATTAAAATTGTACTGGAAGGTGACAAAGTTGTGCTCACCAAAAATGGAGAATTTGTCGGTAAGGGATATTTGTTTAATGGTCTGTCTATGCTAAACACAATTTCCATGAATGCGAATGCTTCTAGTTCTGCCTACATGATTGAATCTGTTAACTTATGGCATGGCAGACTAGGACATGTAAACTTTGCATCAATTAGGAAGCTTAAAGACTTGAGATTTGTTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCTATTTGTGTAGAAAGTAAATTCCATAAGAAACCTTTCAAACCAATTGAATCTAAAACTACTGATATGTTATAATTAATTCACTCGAATCTAACCAATTTTAAAACACTACTAGTAGAGATGGTAAAAACTACTATGTATCTTTTTTTTATGATTACTCTAAATTTACTAAGATATACTTGATAAAAACAAAAGATGAAGCTGGTAGTATGTTTTTAAAATTTAAGGCAGAATCTGAAAATCAGTGAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCTGATAAAAATCTTAAGGACTTTTGTGAGTCA

mRNA sequence

GCTTTACAAAAAATCCTAAATTCCCGAAAAATTCACATAAAATACTAAAATTTTACCTCGATCTTCGGGGCGTTACAATAAAGAATCTTGAAATAATCGTTTAGATTGGATAGCCAAATCTAAACGATCGTGTACCAAATAATCTTGAAAAAATAAATGATCGTGTAAACAAATCTAAATGATCGTGTACCAAAAGAATCTTGAAAAAATTTGTTTAGCCAAATCTAAACGATCGTGAACCAAATTTTTAAAAACAAAATCGTTTAGACTTGGGGTAGCCAAATCAAAACGATGAAATCTACCAAATCTAAACGATCGTGTACCAACCAAATCTAAACCATCATGTACCAAATATATTATGCACGATGTCGACTACATGGTTGATCAGATATTTTTTGTATTCTTTCATTGTGGGCCTGTTGACTTTTTTCATTTTCAAAATTATTCTATATAGTGTAAATATTTTATCGCTTTGTTCAACTTTTGAAAAAATCCCTAATCTTTACCATTTACAAAGTCTTCCATCTGAAAAAATAAAAAATCATTAAAATTAATATTTACACGATCCAGTTTTATAATACATTGCATATTTGATTTGTTTAGGTCAATTAAGTTGGGTTGTGCTAAAATAGCATTATGTGGTACATGTTTAATAGTTCATGTTTAACTGATCTAATGTGGATACATAAATAAAAATTGAATTTCCTTTTATTTTCTACCTCTAACTTTTTAGGGTTTTTAAAATAGTTATGCATTAAAGTAAAAGATATACAACAGGATCTCTGTGCACAATGTTGGAAATAACTTATTGGGCTTGGCCCAAATAGAAAAGTAACAAAAATTGTCCCAAATTGATAAACCTTGAAGTGGGAAAAAGATATATAATCTCAAGTCTTGAAAGGTGACTACAAACTGAGTAAGTTGTGATAGTATAACCCTGTCCCACACACACGCCGCCGCCGTCGTCCGTTCGATCGGACGGGCGGGCTCAGCCAACTGCGCTTGCATGAAAAAAAGGAATATAATTTTATTTTCTATACCTTTTATTTTTGGCATTGGCAGCTATAGAGACACGTGTAATTGCGGTCGACTTCCTTGTTCAAACGTGGCGCACGTTCGCGTTATTCAACGTTCGACGTGCAACGTGTTTGTCCGACGTTTGCTCTCTGTCATATTTTTATGATATTTGCTCGCATCCTCTCTTTGCCGATAATCATTCTCTTCCACACTCTGCCTTCATCGCCTCTCTATAAATTGGATAGAAGTCCTTCCATCTTTCACACACCGAACATAATCACTTCGAGCTCTTCCTCTCTTCCTCTCATATTTCATACCTCTCTGTGTTCTGAGCATTTATAAAAGCCTTTGATTCTATTCCCTGTGCTTGTGAGTGCACATTAGTACTAGGAAGCTGTGTTAACCTTGGAGAGCAACCGACAAAACGATTAGCACCACGGTTAGCCAAACTTGCTTTCAGGACATTGGTTCGTCACGGCACAACAATTATCCTGATCGATAGTTTACCATCTTATCTAACAATCTGAAAGCAAGTATGTCGATCAAGACCTCCAACAAAATTCCACCTGACCTATCCAAACTTGAGCTACTTGATGGAATGAATTATCGTCGTTGGTCCCAAAACTTGTTGATCTTTTTTGAGCAACTAGAAGTTGATTATGTCCTCACCACAGATCTTTCGTCTTCAGATCCCTCAGCTATCACTTCAACATCTTCTGATCCAGAGTCATCTACGGGGCCTTCTGCTACTGCCACTATCGCTGACCAAGTAAAGAATGACCAAGTGATCGATCTTGAAAAATATGCAAAGGATAACAAGACCGTTCGTGGACATCTGTTAAACCATATGTCAGACCCGATGTTCGACCTGTTCGTAGCTCAAAAATCTGCCAAGGACATCTAGAGCACCCTAGAATCACAGTATGGAGGAGATGATGCTGGACGAAAGAAATATGTGGTTGGAAAATGGCTGTAGTTCCAGATGACTGACGACAAGCCAGTCATGGAACAAATACATGAGTACGAGAACCTGGTGGCGAACGTCCTATCTGAAGGCATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGCTGGAAAAGTTTCCTCCATCATGGAATGACTATCATAATCACCTCAAGCAAAAGAAGAAGGATCTGAAGTTTTAGGAACTCATCAATCACATGCGCACGGAAGAAGTCAACAAACTGAAAGATAAGTTGGCCTCCAAAAATTTAAATTCAATTAATGCTAACCTAGTCGAATCGTCTATTGTAAACAGATACAGAACCAAGCAGGAAAAAGGGCATAAGGGGAAAACTCAGAGAAAAAACAATTCAAGGCTTCTGGGGGACAAATTAAGAAGAAAAAGCTAATTTGTTATGTGTGCAGAAAGGAAGGACACAAATCATACCAATGTAACCAAAGAAAAGGGAGACCAAGTCAGAAACCAACACCTCAAGCCAATCTAGCAGAACAAGACAATGAGATCATAGCAGCCATAGTAGAGGCTAATCTGATAGAAAATAAGATGGACTGGATTCTCGATACTGGAGCCTCGAGACACTTCTACACCAATCGAGAACTTCTTCATGACTACGAAGACACTGTCGATGGAGAATGCGTGTTCATGGGAAACTCGCCACTGCAGGAGTGATGGGAAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTCTTAGTAATGTTCTATATGTCGCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGAGCCAAGATTAAAATTGTACTGGAAGGTGACAAAGTTGTGCTCACCAAAAATGGAGAATTTGTCGGTAAGGGATATTTGTTTAATGGTCTGTCTATGCTAAACACAATTTCCATGAATGCGAATGCTTCTAGTTCTGCCTACATGATTGAATCTGTTAACTTATGGCATGGCAGACTAGGACATGTAAACTTTGCATCAATTAGGAAGCTTAAAGACTTGAGATTTGTTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCTATTTGTGTAGAAAGTAAATTCCATAAGAAACCTTTCAAACCAATTGAATCTAAAACTACTGATATGTTATAATTAATTCACTCGAATCTAACCAATTTTAAAACACTACTAGTAGAGATGGTAAAAACTACTATGTATCTTTTTTTTATGATTACTCTAAATTTACTAAGATATACTTGATAAAAACAAAAGATGAAGCTGGTAGTATGTTTTTAAAATTTAAGGCAGAATCTGAAAATCAGTGAGGAAAAAGGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCTGATAAAAATCTTAAGGACTTTTGTGAGTCA

Coding sequence (CDS)

ATGCGTGTTCATGGGAAACTCGCCACTGCAGGAGTGATGGGAAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCTCTTAGTAATGTTCTATATGTCGCTTCCCTACGTAGGAACCTGGTGTCTGGGAGTCTGTTGAATCGAGCCAAGATTAAAATTGTACTGGAAGGTGACAAAGTTGTGCTCACCAAAAATGGAGAATTTGTCGGTAAGGGATATTTGTTTAATGGTCTGTCTATGCTAAACACAATTTCCATGAATGCGAATGCTTCTAGTTCTGCCTACATGATTGAATCTGTTAACTTATGGCATGGCAGACTAGGACATGTAAACTTTGCATCAATTAGGAAGCTTAAAGACTTGAGATTTGTTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCTATTTGTGTAGAAAGTAAATTCCATAAGAAACCTTTCAAACCAATTGAATCTAAAACTACTGATATGTTATAA

Protein sequence

MRVHGKLATAGVMGKGKVILKLTSGKTLSLSNVLYVASLRRNLVSGSLLNRAKIKIVLEGDKVVLTKNGEFVGKGYLFNGLSMLNTISMNANASSSAYMIESVNLWHGRLGHVNFASIRKLKDLRFVNTSESHETGKCPICVESKFHKKPFKPIESKTTDML

Homology

[Close]

BLAST of Cmc03g0070791 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 9.1e-70
Identity = 136/158 (86.08%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 5   GKLATAGVMGKGKVILKLTSGKTLSLSNVLYVASLRRNLVSGSLLNRAKIKIVLEGDKVV 64
           G  ATAGV+GKGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLNRA +KIVLEGDKVV
Sbjct: 367 GNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVV 426

Query: 65  LTKNGEFVGKGYLFNGLSMLNTISMNANASSSAYMIESVNLWHGRLGHVNFASIRKLKDL 124
           LTKNG+FVGKGYL NGL +LNTISMNANASSSAY+IES NLWHGRLGHVNFASIRKLKD+
Sbjct: 427 LTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDM 486

Query: 125 RFVNTSESHETGKCPICVESKFHKKPFKPIESKTTDML 163
           R +NTSE+HETGKCPIC+ESKFHKKPFKP+E +TT++L
Sbjct: 487 RLINTSETHETGKCPICIESKFHKKPFKPVEYRTTELL 524

[Close]

BLAST of Cmc03g0070791 vs. NCBI nr
Match: KAA0066784.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 135/158 (85.44%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 5   GKLATAGVMGKGKVILKLTSGKTLSLSNVLYVASLRRNLVSGSLLNRAKIKIVLEGDKVV 64
           G  ATAGV+GKGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLNRA +KIVLEGDKVV
Sbjct: 367 GNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVV 426

Query: 65  LTKNGEFVGKGYLFNGLSMLNTISMNANASSSAYMIESVNLWHGRLGHVNFASIRKLKDL 124
           LTKNG FVGKGYL NGL +LNTISMNANASSSAY+IES NLWHGRLGHVNFASIRKLKD+
Sbjct: 427 LTKNGNFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDM 486

Query: 125 RFVNTSESHETGKCPICVESKFHKKPFKPIESKTTDML 163
           R +NTSE+HETGKCP+C+ESKFHKKPFKP+E +TT++L
Sbjct: 487 RLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTELL 524

[Close]

BLAST of Cmc03g0070791 vs. NCBI nr
Match: ADN33807.1 (ty1-copia retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 135/158 (85.44%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 5   GKLATAGVMGKGKVILKLTSGKTLSLSNVLYVASLRRNLVSGSLLNRAKIKIVLEGDKVV 64
           G  ATAGV+GKGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLNRA +KIVLEGDKVV
Sbjct: 367 GNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVV 426

Query: 65  LTKNGEFVGKGYLFNGLSMLNTISMNANASSSAYMIESVNLWHGRLGHVNFASIRKLKDL 124
           LTKNG FVGKGYL NGL +LNTISMNANASSSAY+IES NLWHGRLGHVNFASIRKLKD+
Sbjct: 427 LTKNGNFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDM 486

Query: 125 RFVNTSESHETGKCPICVESKFHKKPFKPIESKTTDML 163
           R +NTSE+HETGKCP+C+ESKFHKKPFKP+E +TT++L
Sbjct: 487 RLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTELL 524

[Close]

BLAST of Cmc03g0070791 vs. NCBI nr
Match: KAA0055836.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 272.3 bits (695), Expect = 2.7e-69
Identity = 136/158 (86.08%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 5   GKLATAGVMGKGKVILKLTSGKTLSLSNVLYVASLRRNLVSGSLLNRAKIKIVLEGDKVV 64
           G  ATAGV+GKGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLNRA +KIVLEGDKVV
Sbjct: 367 GNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVV 426

Query: 65  LTKNGEFVGKGYLFNGLSMLNTISMNANASSSAYMIESVNLWHGRLGHVNFASIRKLKDL 124
           LTKNG+FVGKGYL NGL +LNTISMNANASSSAY+IESVNLWHGRLGHVNFASIRKLKD+
Sbjct: 427 LTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESVNLWHGRLGHVNFASIRKLKDM 486

Query: 125 RFVNTSESHETGKCPICVESKFHKKPFKPIESKTTDML 163
           R +NTSE+HETGKC IC+ESKFHKKPFKP+E +TT++L
Sbjct: 487 RLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELL 524

[Close]

BLAST of Cmc03g0070791 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 270.8 bits (691), Expect = 7.7e-69
Identity = 135/158 (85.44%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 5   GKLATAGVMGKGKVILKLTSGKTLSLSNVLYVASLRRNLVSGSLLNRAKIKIVLEGDKVV 64
           G  ATAGV+GKGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLNRA +KIVLEGDKVV
Sbjct: 367 GNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVV 426

Query: 65  LTKNGEFVGKGYLFNGLSMLNTISMNANASSSAYMIESVNLWHGRLGHVNFASIRKLKDL 124
           LTKNG+FVGKGYL NGL +LNTISMNANASSSAY+IES NLWHGRLGHVNFASIRKLKD+
Sbjct: 427 LTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDM 486

Query: 125 RFVNTSESHETGKCPICVESKFHKKPFKPIESKTTDML 163
           R +NTSE+HETGKC IC+ESKFHKKPFKP+E +TT++L
Sbjct: 487 RLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELL 524

[Close]

BLAST of Cmc03g0070791 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.4e-70
Identity = 136/158 (86.08%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 5   GKLATAGVMGKGKVILKLTSGKTLSLSNVLYVASLRRNLVSGSLLNRAKIKIVLEGDKVV 64
           G  ATAGV+GKGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLNRA +KIVLEGDKVV
Sbjct: 367 GNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVV 426

Query: 65  LTKNGEFVGKGYLFNGLSMLNTISMNANASSSAYMIESVNLWHGRLGHVNFASIRKLKDL 124
           LTKNG+FVGKGYL NGL +LNTISMNANASSSAY+IES NLWHGRLGHVNFASIRKLKD+
Sbjct: 427 LTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDM 486

Query: 125 RFVNTSESHETGKCPICVESKFHKKPFKPIESKTTDML 163
           R +NTSE+HETGKCPIC+ESKFHKKPFKP+E +TT++L
Sbjct: 487 RLINTSETHETGKCPICIESKFHKKPFKPVEYRTTELL 524

[Close]

BLAST of Cmc03g0070791 vs. ExPASy TrEMBL
Match: A0A5A7VHG8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G001260 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.8e-70
Identity = 135/158 (85.44%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 5   GKLATAGVMGKGKVILKLTSGKTLSLSNVLYVASLRRNLVSGSLLNRAKIKIVLEGDKVV 64
           G  ATAGV+GKGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLNRA +KIVLEGDKVV
Sbjct: 367 GNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVV 426

Query: 65  LTKNGEFVGKGYLFNGLSMLNTISMNANASSSAYMIESVNLWHGRLGHVNFASIRKLKDL 124
           LTKNG FVGKGYL NGL +LNTISMNANASSSAY+IES NLWHGRLGHVNFASIRKLKD+
Sbjct: 427 LTKNGNFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDM 486

Query: 125 RFVNTSESHETGKCPICVESKFHKKPFKPIESKTTDML 163
           R +NTSE+HETGKCP+C+ESKFHKKPFKP+E +TT++L
Sbjct: 487 RLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTELL 524

[Close]

BLAST of Cmc03g0070791 vs. ExPASy TrEMBL
Match: E5GBG5 (Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.8e-70
Identity = 135/158 (85.44%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 5   GKLATAGVMGKGKVILKLTSGKTLSLSNVLYVASLRRNLVSGSLLNRAKIKIVLEGDKVV 64
           G  ATAGV+GKGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLNRA +KIVLEGDKVV
Sbjct: 367 GNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVV 426

Query: 65  LTKNGEFVGKGYLFNGLSMLNTISMNANASSSAYMIESVNLWHGRLGHVNFASIRKLKDL 124
           LTKNG FVGKGYL NGL +LNTISMNANASSSAY+IES NLWHGRLGHVNFASIRKLKD+
Sbjct: 427 LTKNGNFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDM 486

Query: 125 RFVNTSESHETGKCPICVESKFHKKPFKPIESKTTDML 163
           R +NTSE+HETGKCP+C+ESKFHKKPFKP+E +TT++L
Sbjct: 487 RLINTSETHETGKCPVCIESKFHKKPFKPVEYRTTELL 524

[Close]

BLAST of Cmc03g0070791 vs. ExPASy TrEMBL
Match: A0A5A7UNH1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold104G00100 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 136/158 (86.08%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 5   GKLATAGVMGKGKVILKLTSGKTLSLSNVLYVASLRRNLVSGSLLNRAKIKIVLEGDKVV 64
           G  ATAGV+GKGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLNRA +KIVLEGDKVV
Sbjct: 367 GNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVV 426

Query: 65  LTKNGEFVGKGYLFNGLSMLNTISMNANASSSAYMIESVNLWHGRLGHVNFASIRKLKDL 124
           LTKNG+FVGKGYL NGL +LNTISMNANASSSAY+IESVNLWHGRLGHVNFASIRKLKD+
Sbjct: 427 LTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESVNLWHGRLGHVNFASIRKLKDM 486

Query: 125 RFVNTSESHETGKCPICVESKFHKKPFKPIESKTTDML 163
           R +NTSE+HETGKC IC+ESKFHKKPFKP+E +TT++L
Sbjct: 487 RLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELL 524

[Close]

BLAST of Cmc03g0070791 vs. ExPASy TrEMBL
Match: A0A5D3DJE2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004120 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.7e-69
Identity = 135/158 (85.44%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 5   GKLATAGVMGKGKVILKLTSGKTLSLSNVLYVASLRRNLVSGSLLNRAKIKIVLEGDKVV 64
           G  ATAGV+GKGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLNRA +KIVLEGDKVV
Sbjct: 263 GNSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVV 322

Query: 65  LTKNGEFVGKGYLFNGLSMLNTISMNANASSSAYMIESVNLWHGRLGHVNFASIRKLKDL 124
           LTKNG+FVGKGYL NGL +LNTISMNANASSSAY+IES NLWHGRLGHVNFASIRKLKD+
Sbjct: 323 LTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKDM 382

Query: 125 RFVNTSESHETGKCPICVESKFHKKPFKPIESKTTDML 163
           R +NTSE+HETGKC IC+ESKFHKKPFKP+E +TT++L
Sbjct: 383 RLINTSETHETGKCSICIESKFHKKPFKPVEYRTTELL 420

The following BLAST results are available for this feature:

BLAST of Cmc03g0070791 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04394.1	9.1e-70	86.08	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066784.1	2.0e-69	85.44	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN33807.1	2.0e-69	85.44	ty1-copia retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0055836.1	2.7e-69	86.08	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	7.7e-69	85.44	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0070791 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc03g0070791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZI1	4.4e-70	86.08	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VHG8	9.8e-70	85.44	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
E5GBG5	9.8e-70	85.44	Ty1-copia retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=...	[more]
A0A5A7UNH1	1.3e-69	86.08	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DJE2	3.7e-69	85.44	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc03g0070791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 80..145 e-value: 3.0E-12 score: 46.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0070791.1	Cmc03g0070791.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding