Cmc03g0070381 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0070381
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	TTF-type domain-containing protein
Location	CMiso1.1chr03: 16164459 .. 16164734 (+)
RNA-Seq Expression	Cmc03g0070381
Synteny	Cmc03g0070381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGGTCATGTGATTGAAAGATTTATTGGAATCATCCATGTTAATAACACAAGTGCCCTATCACTTAAGAAAGTTATTGATGGTTTTTTCTCTCAACATGGGTTAAGTATTGCTAATTTGCGAGGACAAGGATATGATGAAGCAAGTAATATGCAAGGTGAGCTTCATGGCTTGAAAGCACTTATTTTGAAAGAAAATGAATGTGCTTTTTACATTCATTGTTTTCCTCATCAACTTCAATTACTTGTCTCAAGTCGTACAATGCAATGA

mRNA sequence

ATGGATGAAGGTCATGTGATTGAAAGATTTATTGGAATCATCCATGTTAATAACACAAGTGCCCTATCACTTAAGAAAGTTATTGATGGTTTTTTCTCTCAACATGGGTTAAGTATTGCTAATTTGCGAGGACAAGGATATGATGAAGCAAGTAATATGCAAGGTGAGCTTCATGGCTTGAAAGCACTTATTTTGAAAGAAAATGAATGTGCTTTTTACATTCATTGTTTTCCTCATCAACTTCAATTACTTGTCTCAAGTCGTACAATGCAATGA

Coding sequence (CDS)

ATGGATGAAGGTCATGTGATTGAAAGATTTATTGGAATCATCCATGTTAATAACACAAGTGCCCTATCACTTAAGAAAGTTATTGATGGTTTTTTCTCTCAACATGGGTTAAGTATTGCTAATTTGCGAGGACAAGGATATGATGAAGCAAGTAATATGCAAGGTGAGCTTCATGGCTTGAAAGCACTTATTTTGAAAGAAAATGAATGTGCTTTTTACATTCATTGTTTTCCTCATCAACTTCAATTACTTGTCTCAAGTCGTACAATGCAATGA

Protein sequence

MDEGHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLKALILKENECAFYIHCFPHQLQLLVSSRTMQ

Homology

[Close]

BLAST of Cmc03g0070381 vs. NCBI nr
Match: XP_011658426.2 (zinc finger MYM-type protein 1 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 8.3e-28
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1   MDEGHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGL 60
           +D+G VIERF+GIIHV NTS LSLK+ I  FFS HGLS+A+LRGQGYD ASNMQGE +GL
Sbjct: 125 VDKGCVIERFVGIIHVTNTSLLSLKEAITRFFSIHGLSMASLRGQGYDGASNMQGEFNGL 184

Query: 61  KALILKENECAFYIHCFPHQLQL 84
           K LIL+ENECAFYIHCF HQLQL
Sbjct: 185 KILILRENECAFYIHCFSHQLQL 207

[Close]

BLAST of Cmc03g0070381 vs. NCBI nr
Match: XP_024178694.1 (zinc finger MYM-type protein 1-like [Rosa chinensis])

HSP 1 Score: 130.6 bits (327), Expect = 7.0e-27
Identity = 58/83 (69.88%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1  MDEGHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGL 60
          +D+G+VI+RF+GI HV NT+A++LK  IDGF S+HGLSI+ LRG+GYD ASNM+GEL+GL
Sbjct: 14 VDDGNVIDRFVGIEHVTNTNAITLKDAIDGFLSRHGLSISRLRGRGYDGASNMRGELNGL 73

Query: 61 KALILKENECAFYIHCFPHQLQL 84
          K LIL EN+CAFY+HCF HQLQL
Sbjct: 74 KTLILNENKCAFYVHCFAHQLQL 96

[Close]

BLAST of Cmc03g0070381 vs. NCBI nr
Match: XP_028964695.1 (uncharacterized protein LOC103444377 [Malus domestica])

HSP 1 Score: 130.2 bits (326), Expect = 9.2e-27
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 1   MDEGHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGL 60
           +D+GHVIERF+GI HV +T A SLK  ID FFS+HGLSI+ LRGQGYD ASNMQGE +GL
Sbjct: 213 VDKGHVIERFVGIEHVADTKASSLKLAIDDFFSRHGLSISKLRGQGYDGASNMQGEFNGL 272

Query: 61  KALILKENECAFYIHCFPHQLQL 84
           KAL+L ENE AFY+HCF HQLQL
Sbjct: 273 KALVLNENESAFYVHCFAHQLQL 295

[Close]

BLAST of Cmc03g0070381 vs. NCBI nr
Match: PSS03138.1 (Zinc finger MYM-type protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 3   EGHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLKA 62
           EGHVIERF+GI HV NTSAL+LKK ++  F ++GLSI+ LRGQGYD  +NMQGEL+GLKA
Sbjct: 182 EGHVIERFLGIEHVTNTSALTLKKAVEDLFCRYGLSISRLRGQGYDGVNNMQGELNGLKA 241

Query: 63  LILKENECAFYIHCFPHQLQL 84
           LILKEN CA+Y+HCF HQLQL
Sbjct: 242 LILKENPCAYYVHCFAHQLQL 262

[Close]

BLAST of Cmc03g0070381 vs. NCBI nr
Match: XP_024197949.1 (zinc finger MYM-type protein 1-like [Rosa chinensis])

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 2   DEGHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLK 61
           D+G VIERF+GI HV +T A SLK  ID  FS++GLSI+NLRGQGYD ASNMQGE +GLK
Sbjct: 251 DKGQVIERFVGIQHVKSTDARSLKLAIDELFSRNGLSISNLRGQGYDGASNMQGEFNGLK 310

Query: 62  ALILKENECAFYIHCFPHQLQL 84
           ALILKEN+CAFY+HCF HQLQL
Sbjct: 311 ALILKENDCAFYVHCFAHQLQL 332

[Close]

BLAST of Cmc03g0070381 vs. ExPASy Swiss-Prot
Match: Q5SVZ6 (Zinc finger MYM-type protein 1 OS=Homo sapiens OX=9606 GN=ZMYM1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 24/78 (30.77%), Postives = 40/78 (51.28%), Query Frame = 0


Query: 8   ERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLKALILKE 67
           ERF+G +     +   L + I  +  Q G+ +  + GQ YD  +N++ + + + A   KE
Sbjct: 677 ERFLGFVDTEEMTGTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNLKIKFNKIAAEFKKE 736

Query: 68  NECAFYIHCFPHQLQLLV 86
              A YIHC+ H L L +
Sbjct: 737 EPRALYIHCYAHFLDLSI 754

[Close]

BLAST of Cmc03g0070381 vs. ExPASy TrEMBL
Match: A0A2R6Q784 (Zinc finger MYM-type protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc21521 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.6e-27
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 3   EGHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLKA 62
           EGHVIERF+GI HV NTSAL+LKK ++  F ++GLSI+ LRGQGYD  +NMQGEL+GLKA
Sbjct: 182 EGHVIERFLGIEHVTNTSALTLKKAVEDLFCRYGLSISRLRGQGYDGVNNMQGELNGLKA 241

Query: 63  LILKENECAFYIHCFPHQLQL 84
           LILKEN CA+Y+HCF HQLQL
Sbjct: 242 LILKENPCAYYVHCFAHQLQL 262

[Close]

BLAST of Cmc03g0070381 vs. ExPASy TrEMBL
Match: A0A2P5BWS1 (DUF4371 domain-containing protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_305960 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.6e-27
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 2   DEGHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLK 61
           + GHVIERFIGI+HV NT+ALSLK  I+  FS+H LS++ LRGQGYD ASNMQGE +GLK
Sbjct: 198 NNGHVIERFIGIVHVPNTTALSLKTAINELFSRHNLSVSRLRGQGYDGASNMQGEFNGLK 257

Query: 62  ALILKENECAFYIHCFPHQLQL 84
            LILKEN CA+YIHCF HQLQL
Sbjct: 258 TLILKENPCAYYIHCFAHQLQL 279

[Close]

BLAST of Cmc03g0070381 vs. ExPASy TrEMBL
Match: A0A7J0F9G5 (Dihydroxyacetone kinase OS=Actinidia rufa OX=165716 GN=Acr_10g0007270 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.9e-27
Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 3   EGHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLKA 62
           EGHVIERF+GI HV NTSAL+LKK ++  F +HGLSI+ LRGQGYD ASNMQ EL+GLKA
Sbjct: 123 EGHVIERFLGIEHVTNTSALALKKAVEDLFCRHGLSISRLRGQGYDGASNMQVELNGLKA 182

Query: 63  LILKENECAFYIHCFPHQLQL 84
           LILKE+ CA+Y+HCF HQLQL
Sbjct: 183 LILKESPCAYYVHCFAHQLQL 203

[Close]

BLAST of Cmc03g0070381 vs. ExPASy TrEMBL
Match: A0A2P6SNT9 (Putative transcription factor and/or regulators TTF-type(Zn) family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0380371 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.9e-26
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 2   DEGHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLK 61
           ++G VIERF+GI HV +T A SLK  ID  FS++GLSI+NLRGQGYD ASNMQGE +GLK
Sbjct: 310 NKGQVIERFVGIQHVKSTDARSLKLAIDELFSRNGLSISNLRGQGYDGASNMQGEFNGLK 369

Query: 62  ALILKENECAFYIHCFPHQLQL 84
           ALILKEN+CAFY+HCF HQLQL
Sbjct: 370 ALILKENDCAFYVHCFAHQLQL 391

[Close]

BLAST of Cmc03g0070381 vs. ExPASy TrEMBL
Match: A0A6P5RJS3 (zinc finger MYM-type protein 1-like OS=Prunus avium OX=42229 GN=LOC110745304 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 3   EGHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLKA 62
           +GHVIERF+G+ HVN+T+ALSLKK ID FFS++ LSI+ LRGQGYD ASNM+GE +GLK 
Sbjct: 303 KGHVIERFVGVEHVNDTTALSLKKAIDNFFSRNKLSISRLRGQGYDGASNMRGEFNGLKT 362

Query: 63  LILKENECAFYIHCFPHQLQLLVSS 88
            ILKENE A+Y+HCF HQLQL++ S
Sbjct: 363 HILKENESAYYVHCFAHQLQLVLVS 387

[Close]

BLAST of Cmc03g0070381 vs. TAIR 10
Match: AT1G19260.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-26
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 4   GHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLKAL 63
           G V ERFIG+IHV  TS+LSLK  ID  F+++GLS+  LRGQGYD ASNM+GE +GL++L
Sbjct: 291 GVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASNMKGEFNGLRSL 350

Query: 64  ILKENECAFYIHCFPHQLQLLV 86
           ILKE+  A+Y+HCF HQLQL+V
Sbjct: 351 ILKESSSAYYVHCFAHQLQLVV 372

[Close]

BLAST of Cmc03g0070381 vs. TAIR 10
Match: AT3G29763.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 113.6 bits (283), Expect = 8.3e-26
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 4   GHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLKAL 63
           G V ERFIG+IHV  TS+LSLK  ID  F+++GLS+  LRG+GYD ASNM+G+ +GL++L
Sbjct: 159 GVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASNMKGKFNGLRSL 218

Query: 64  ILKENECAFYIHCFPHQLQLLV 86
           ILKEN  A+Y+HCF HQLQL+V
Sbjct: 219 ILKENSSAYYVHCFAHQLQLVV 240

[Close]

BLAST of Cmc03g0070381 vs. TAIR 10
Match: AT3G29765.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 113.6 bits (283), Expect = 8.3e-26
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 4   GHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLKAL 63
           G V ERFIG+IHV  TS+LSLK  ID  F+++GLS+  LRG+GYD ASNM+G+ +GL++L
Sbjct: 58  GVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASNMKGKFNGLRSL 117

Query: 64  ILKENECAFYIHCFPHQLQLLV 86
           ILKEN  A+Y+HCF HQLQL+V
Sbjct: 118 ILKENSSAYYVHCFAHQLQLVV 139

[Close]

BLAST of Cmc03g0070381 vs. TAIR 10
Match: AT1G41920.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 107.5 bits (267), Expect = 5.9e-24
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 4   GHVIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLKAL 63
           G V ERFIG+IHV  TS+ SLK  ID  F++ GLS+  LRGQGYD A+NM+GE + L++L
Sbjct: 116 GTVKERFIGLIHVKETSSASLKCAIDSLFAKRGLSMKQLRGQGYDGANNMKGEFNWLRSL 175

Query: 64  ILKENECAFYIHCFPHQLQLLV 86
           IL+EN  A+YIHCF HQLQL+V
Sbjct: 176 ILRENSSAYYIHCFAHQLQLVV 197

[Close]

BLAST of Cmc03g0070381 vs. TAIR 10
Match: AT2G06541.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 104.8 bits (260), Expect = 3.8e-23
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 6   VIERFIGIIHVNNTSALSLKKVIDGFFSQHGLSIANLRGQGYDEASNMQGELHGLKALIL 65
           V ERFIG+IHV  T +  LK  ID  F++HGLSI  +RGQ YD ASNM+GE +GL+ LIL
Sbjct: 226 VKERFIGLIHVKETFSAFLKCAIDSLFAKHGLSIKQIRGQDYDGASNMKGEFNGLRYLIL 285

Query: 66  KENECAFYIHCFPHQLQLLV 86
           +EN  A+YIHCF HQLQL+V
Sbjct: 286 RENSSAYYIHCFAHQLQLVV 305

The following BLAST results are available for this feature:

BLAST of Cmc03g0070381 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658426.2	8.3e-28	77.11	zinc finger MYM-type protein 1 [Cucumis sativus]	[more]
XP_024178694.1	7.0e-27	69.88	zinc finger MYM-type protein 1-like [Rosa chinensis]	[more]
XP_028964695.1	9.2e-27	73.49	uncharacterized protein LOC103444377 [Malus domestica]	[more]
PSS03138.1	1.6e-26	72.84	Zinc finger MYM-type protein [Actinidia chinensis var. chinensis]	[more]
XP_024197949.1	1.6e-26	74.39	zinc finger MYM-type protein 1-like [Rosa chinensis]	[more]

BLAST of Cmc03g0070381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5SVZ6	1.1e-06	30.77	Zinc finger MYM-type protein 1 OS=Homo sapiens OX=9606 GN=ZMYM1 PE=1 SV=1	[more]

BLAST of Cmc03g0070381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2R6Q784	7.6e-27	72.84	Zinc finger MYM-type protein OS=Actinidia chinensis var. chinensis OX=1590841 GN...	[more]
A0A2P5BWS1	7.6e-27	73.17	DUF4371 domain-containing protein (Fragment) OS=Trema orientale OX=63057 GN=TorR...	[more]
A0A7J0F9G5	9.9e-27	74.07	Dihydroxyacetone kinase OS=Actinidia rufa OX=165716 GN=Acr_10g0007270 PE=4 SV=1	[more]
A0A2P6SNT9	2.9e-26	73.17	Putative transcription factor and/or regulators TTF-type(Zn) family OS=Rosa chin...	[more]
A0A6P5RJS3	3.8e-26	69.41	zinc finger MYM-type protein 1-like OS=Prunus avium OX=42229 GN=LOC110745304 PE=...	[more]

BLAST of Cmc03g0070381 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19260.1	3.7e-26	64.63	TTF-type zinc finger protein with HAT dimerisation domain	[more]
AT3G29763.1	8.3e-26	63.41	General transcription factor 2-related zinc finger protein	[more]
AT3G29765.1	8.3e-26	63.41	General transcription factor 2-related zinc finger protein	[more]
AT1G41920.1	5.9e-24	62.20	General transcription factor 2-related zinc finger protein	[more]
AT2G06541.1	3.8e-23	62.50	TTF-type zinc finger protein with HAT dimerisation domain	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025398	Domain of unknown function DUF4371	PFAM	PF14291	DUF4371	coord: 2..59 e-value: 3.8E-14 score: 52.8
None	No IPR available	PANTHER	PTHR11697	GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN	coord: 3..86
None	No IPR available	PANTHER	PTHR11697:SF206	GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN-RELATED	coord: 3..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0070381.1	Cmc03g0070381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006071	glycerol metabolic process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0016020	membrane
molecular_function	GO:0004371	glycerone kinase activity
molecular_function	GO:0046983	protein dimerization activity