Cmc03g0069711 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0069711
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr03: 15089583 .. 15090134 (+)
RNA-Seq Expression	Cmc03g0069711
Synteny	Cmc03g0069711

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATGTAGATAAGGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTACCTAAAGGGGTAAAACATATAGGGTGTAAATGGATCTATAATAGAAAGAGAGATTCAACTGGGAAGGTACAAACCTTCAAAGCTAGACTTGTAGCAAAAGGGTATACCCAAAGGGAAGGGGTTGACTATGAGAAAACTTTTTCTCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCATGTCCATCGCCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTGTAAGCTGAATCGATCCATTTATAGGTTGAAACAAGCATCTAGATCTTGGAACAATAGGTTTGATACTGCGATCAAATCCTACGGTTTTGACCAAAACGTTGATGAACCTTGTGTATATAAGAAAATCAATAAGGAAAAGTAG

mRNA sequence

ATGAATGATGTAGATAAGGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTACCTAAAGGGGTAAAACATATAGGGTGTAAATGGATCTATAATAGAAAGAGAGATTCAACTGGGAAGGTACAAACCTTCAAAGCTAGACTTGTAGCAAAAGGGTATACCCAAAGGGAAGGGGTTGACTATGAGAAAACTTTTTCTCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCATGTCCATCGCCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTGTAAGCTGAATCGATCCATTTATAGGTTGAAACAAGCATCTAGATCTTGGAACAATAGGTTTGATACTGCGATCAAATCCTACGGTTTTGACCAAAACGTTGATGAACCTTGTGTATATAAGAAAATCAATAAGGAAAAGTAG

Coding sequence (CDS)

ATGAATGATGTAGATAAGGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTACCTAAAGGGGTAAAACATATAGGGTGTAAATGGATCTATAATAGAAAGAGAGATTCAACTGGGAAGGTACAAACCTTCAAAGCTAGACTTGTAGCAAAAGGGTATACCCAAAGGGAAGGGGTTGACTATGAGAAAACTTTTTCTCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCATGTCCATCGCCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTGAATGGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTGTAAGCTGAATCGATCCATTTATAGGTTGAAACAAGCATCTAGATCTTGGAACAATAGGTTTGATACTGCGATCAAATCCTACGGTTTTGACCAAAACGTTGATGAACCTTGTGTATATAAGAAAATCAATAAGGAAAAGTAG

Protein sequence

MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKARLVAKGYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKINKEK

Homology

[Close]

BLAST of Cmc03g0069711 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 358.6 bits (919), Expect = 3.2e-95
Identity = 174/183 (95.08%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKAR 60
           MNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVK IGCKWIY RKRDS GKVQTFKAR
Sbjct: 330 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 389

Query: 61  LVAKGYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIF 120
           LVAKGYTQREGVDYE+TFSPVAMLKSIRIL+SIATFYDYEIWQMDVKTAFLNGNLEESIF
Sbjct: 390 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 449

Query: 121 MSQPEGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKIN 180
           MSQPEGFITQGQEQKVCKLNRSIY LKQASRSWN RFDTAIKSYGFDQNVDEPCVYKKIN
Sbjct: 450 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 509

Query: 181 KEK 184
           K K
Sbjct: 510 KGK 512

[Close]

BLAST of Cmc03g0069711 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 358.6 bits (919), Expect = 3.2e-95
Identity = 174/183 (95.08%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKAR 60
           MNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVK IGCKWIY RKRDS GKVQTFKAR
Sbjct: 720 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 779

Query: 61  LVAKGYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIF 120
           LVAKGYTQREGVDYE+TFSPVAMLKSIRIL+SIATFYDYEIWQMDVKTAFLNGNLEESIF
Sbjct: 780 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 839

Query: 121 MSQPEGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKIN 180
           MSQPEGFITQGQEQKVCKLNRSIY LKQASRSWN RFDTAIKSYGFDQNVDEPCVYKKIN
Sbjct: 840 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 899

Query: 181 KEK 184
           K K
Sbjct: 900 KGK 902

[Close]

BLAST of Cmc03g0069711 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 358.6 bits (919), Expect = 3.2e-95
Identity = 174/183 (95.08%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKAR 60
           MNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVK IGCKWIY RKRDS GKVQTFKAR
Sbjct: 594 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 653

Query: 61  LVAKGYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIF 120
           LVAKGYTQREGVDYE+TFSPVAMLKSIRIL+SIATFYDYEIWQMDVKTAFLNGNLEESIF
Sbjct: 654 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 713

Query: 121 MSQPEGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKIN 180
           MSQPEGFITQGQEQKVCKLNRSIY LKQASRSWN RFDTAIKSYGFDQNVDEPCVYKKIN
Sbjct: 714 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 773

Query: 181 KEK 184
           K K
Sbjct: 774 KGK 776

[Close]

BLAST of Cmc03g0069711 vs. NCBI nr
Match: TYJ98650.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.8 bits (904), Expect = 1.7e-93
Identity = 170/183 (92.90%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKAR 60
           MNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVK IGCKWIY RKRDS GKVQTFKAR
Sbjct: 419 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 478

Query: 61  LVAKGYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIF 120
           LVAKGYTQREGVDYE+TF PVAMLKSIRIL+SIATFYDYEIWQMDVKTAFLNGNLEESIF
Sbjct: 479 LVAKGYTQREGVDYEETFFPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 538

Query: 121 MSQPEGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKIN 180
           MSQPEGFITQGQEQ+VCKLNRSIYRLKQASRSWN RFDT IKSYGF+QNVDEPCVYKK+N
Sbjct: 539 MSQPEGFITQGQEQEVCKLNRSIYRLKQASRSWNIRFDTTIKSYGFNQNVDEPCVYKKMN 598

Query: 181 KEK 184
           K K
Sbjct: 599 KGK 601

[Close]

BLAST of Cmc03g0069711 vs. NCBI nr
Match: KAA0047456.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.8 bits (904), Expect = 1.7e-93
Identity = 170/183 (92.90%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKAR 60
           MNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVK IGCKWIY RKRDS GKVQTFKAR
Sbjct: 485 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 544

Query: 61  LVAKGYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIF 120
           LVAKGYTQREGVDYE+TF PVAMLKSIRIL+SIATFYDYEIWQMDVKTAFLNGNLEESIF
Sbjct: 545 LVAKGYTQREGVDYEETFFPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 604

Query: 121 MSQPEGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKIN 180
           MSQPEGFITQGQEQ+VCKLNRSIYRLKQASRSWN RFDT IKSYGF+QNVDEPCVYKK+N
Sbjct: 605 MSQPEGFITQGQEQEVCKLNRSIYRLKQASRSWNIRFDTTIKSYGFNQNVDEPCVYKKMN 664

Query: 181 KEK 184
           K K
Sbjct: 665 KGK 667

[Close]

BLAST of Cmc03g0069711 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.7e-46
Identity = 85/174 (48.85%), Postives = 125/174 (71.84%), Query Frame = 0


Query: 5   DKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKARLVAK 64
           +K+Q +KAM  EMES+  N  ++LV+LPKG + + CKW++  K+D   K+  +KARLV K
Sbjct: 822 EKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVK 881

Query: 65  GYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQP 124
           G+ Q++G+D+++ FSPV  + SIR ++S+A   D E+ Q+DVKTAFL+G+LEE I+M QP
Sbjct: 882 GFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQP 941

Query: 125 EGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKK 179
           EGF   G++  VCKLN+S+Y LKQA R W  +FD+ +KS  + +   +PCVY K
Sbjct: 942 EGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFK 995

[Close]

BLAST of Cmc03g0069711 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.9e-35
Identity = 71/171 (41.52%), Postives = 107/171 (62.57%), Query Frame = 0


Query: 7    DQWVKAMDLEMESMYFNSVWELV-DLPKGVKHIGCKWIYNRKRDSTGKVQTFKARLVAKG 66
            D+W +AM  E+ +   N  W+LV   P  V  +GC+WI+ +K +S G +  +KARLVAKG
Sbjct: 949  DRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKG 1008

Query: 67   YTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPE 126
            Y QR G+DY +TFSPV    SIRI++ +A    + I Q+DV  AFL G L + ++MSQP 
Sbjct: 1009 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPP 1068

Query: 127  GFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVY 177
            GF+ + +   VC+L ++IY LKQA R+W     T + + GF  ++ +  ++
Sbjct: 1069 GFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLF 1119

[Close]

BLAST of Cmc03g0069711 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-34
Identity = 71/171 (41.52%), Postives = 105/171 (61.40%), Query Frame = 0


Query: 7    DQWVKAMDLEMESMYFNSVWELVDLPKG-VKHIGCKWIYNRKRDSTGKVQTFKARLVAKG 66
            ++W  AM  E+ +   N  W+LV  P   V  +GC+WI+ +K +S G +  +KARLVAKG
Sbjct: 966  ERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKG 1025

Query: 67   YTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPE 126
            Y QR G+DY +TFSPV    SIRI++ +A    + I Q+DV  AFL G L + ++MSQP 
Sbjct: 1026 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPP 1085

Query: 127  GFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVY 177
            GFI + +   VCKL +++Y LKQA R+W       + + GF  +V +  ++
Sbjct: 1086 GFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLF 1136

[Close]

BLAST of Cmc03g0069711 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-34
Identity = 68/172 (39.53%), Postives = 107/172 (62.21%), Query Frame = 0


Query: 5    DKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKARLVAK 64
            DK  W +A++ E+ +   N+ W +   P+    +  +W+++ K +  G    +KARLVA+
Sbjct: 902  DKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVAR 961

Query: 65   GYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQP 124
            G+TQ+  +DYE+TF+PVA + S R ++S+   Y+ ++ QMDVKTAFLNG L+E I+M  P
Sbjct: 962  GFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLP 1021

Query: 125  EGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVY 177
            +G         VCKLN++IY LKQA+R W   F+ A+K   F  +  + C+Y
Sbjct: 1022 QGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIY 1071

[Close]

BLAST of Cmc03g0069711 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 9   WVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKARLVAKGYTQ 68
           W +AM  E++++  N  W LV  P     +GCKW++  K  S G +   KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 69  REGVDYEKTFSPVAMLKSIRILMSIA 95
            EG+ + +T+SPV    +IR ++++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc03g0069711 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.5e-95
Identity = 174/183 (95.08%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKAR 60
           MNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVK IGCKWIY RKRDS GKVQTFKAR
Sbjct: 720 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 779

Query: 61  LVAKGYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIF 120
           LVAKGYTQREGVDYE+TFSPVAMLKSIRIL+SIATFYDYEIWQMDVKTAFLNGNLEESIF
Sbjct: 780 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 839

Query: 121 MSQPEGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKIN 180
           MSQPEGFITQGQEQKVCKLNRSIY LKQASRSWN RFDTAIKSYGFDQNVDEPCVYKKIN
Sbjct: 840 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 899

Query: 181 KEK 184
           K K
Sbjct: 900 KGK 902

[Close]

BLAST of Cmc03g0069711 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.5e-95
Identity = 174/183 (95.08%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKAR 60
           MNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVK IGCKWIY RKRDS GKVQTFKAR
Sbjct: 330 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 389

Query: 61  LVAKGYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIF 120
           LVAKGYTQREGVDYE+TFSPVAMLKSIRIL+SIATFYDYEIWQMDVKTAFLNGNLEESIF
Sbjct: 390 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 449

Query: 121 MSQPEGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKIN 180
           MSQPEGFITQGQEQKVCKLNRSIY LKQASRSWN RFDTAIKSYGFDQNVDEPCVYKKIN
Sbjct: 450 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 509

Query: 181 KEK 184
           K K
Sbjct: 510 KGK 512

[Close]

BLAST of Cmc03g0069711 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.5e-95
Identity = 174/183 (95.08%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKAR 60
           MNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVK IGCKWIY RKRDS GKVQTFKAR
Sbjct: 594 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 653

Query: 61  LVAKGYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIF 120
           LVAKGYTQREGVDYE+TFSPVAMLKSIRIL+SIATFYDYEIWQMDVKTAFLNGNLEESIF
Sbjct: 654 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 713

Query: 121 MSQPEGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKIN 180
           MSQPEGFITQGQEQKVCKLNRSIY LKQASRSWN RFDTAIKSYGFDQNVDEPCVYKKIN
Sbjct: 714 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 773

Query: 181 KEK 184
           K K
Sbjct: 774 KGK 776

[Close]

BLAST of Cmc03g0069711 vs. ExPASy TrEMBL
Match: A0A5D3BFS9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00360 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 8.5e-94
Identity = 170/183 (92.90%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKAR 60
           MNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVK IGCKWIY RKRDS GKVQTFKAR
Sbjct: 419 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 478

Query: 61  LVAKGYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIF 120
           LVAKGYTQREGVDYE+TF PVAMLKSIRIL+SIATFYDYEIWQMDVKTAFLNGNLEESIF
Sbjct: 479 LVAKGYTQREGVDYEETFFPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 538

Query: 121 MSQPEGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKIN 180
           MSQPEGFITQGQEQ+VCKLNRSIYRLKQASRSWN RFDT IKSYGF+QNVDEPCVYKK+N
Sbjct: 539 MSQPEGFITQGQEQEVCKLNRSIYRLKQASRSWNIRFDTTIKSYGFNQNVDEPCVYKKMN 598

Query: 181 KEK 184
           K K
Sbjct: 599 KGK 601

[Close]

BLAST of Cmc03g0069711 vs. ExPASy TrEMBL
Match: A0A5A7TZQ3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00600 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 8.5e-94
Identity = 170/183 (92.90%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKAR 60
           MNDVDKDQWVKAMDLEMESMYFNSVWELVDLP+GVK IGCKWIY RKRDS GKVQTFKAR
Sbjct: 485 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 544

Query: 61  LVAKGYTQREGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIF 120
           LVAKGYTQREGVDYE+TF PVAMLKSIRIL+SIATFYDYEIWQMDVKTAFLNGNLEESIF
Sbjct: 545 LVAKGYTQREGVDYEETFFPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 604

Query: 121 MSQPEGFITQGQEQKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKIN 180
           MSQPEGFITQGQEQ+VCKLNRSIYRLKQASRSWN RFDT IKSYGF+QNVDEPCVYKK+N
Sbjct: 605 MSQPEGFITQGQEQEVCKLNRSIYRLKQASRSWNIRFDTTIKSYGFNQNVDEPCVYKKMN 664

Query: 181 KEK 184
           K K
Sbjct: 665 KGK 667

[Close]

BLAST of Cmc03g0069711 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 161.0 bits (406), Expect = 9.1e-40
Identity = 77/175 (44.00%), Postives = 112/175 (64.00%), Query Frame = 0


Query: 9   WVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKARLVAKGYTQ 68
           W  AMD E+ +M     WE+  LP   K IGCKW+Y  K +S G ++ +KARLVAKGYTQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 69  REGVDYEKTFSPVAMLKSIRILMSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFI 128
           +EG+D+ +TFSPV  L S++++++I+  Y++ + Q+D+  AFLNG+L+E I+M  P G+ 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

Query: 129 T-QGQE---QKVCKLNRSIYRLKQASRSWNNRFDTAIKSYGFDQNVDEPCVYKKI 180
             QG       VC L +SIY LKQASR W  +F   +  +GF Q+  +   + KI
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKI 272

[Close]

BLAST of Cmc03g0069711 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 78.2 bits (191), Expect = 7.7e-15
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 9   WVKAMDLEMESMYFNSVWELVDLPKGVKHIGCKWIYNRKRDSTGKVQTFKARLVAKGYTQ 68
           W +AM  E++++  N  W LV  P     +GCKW++  K  S G +   KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 69  REGVDYEKTFSPVAMLKSIRILMSIA 95
            EG+ + +T+SPV    +IR ++++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc03g0069711 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15984.1	3.2e-95	95.08	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	3.2e-95	95.08	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	3.2e-95	95.08	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ98650.1	1.7e-93	92.90	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0047456.1	1.7e-93	92.90	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0069711 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.7e-46	48.85	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.9e-35	41.52	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.5e-34	41.52	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.9e-34	39.53	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	1.1e-13	39.53	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc03g0069711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZD0	1.5e-95	95.08	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3CYF4	1.5e-95	95.08	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]
A0A5A7UYE8	1.5e-95	95.08	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5D3BFS9	8.5e-94	92.90	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G0036...	[more]
A0A5A7TZQ3	8.5e-94	92.90	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G0060...	[more]

BLAST of Cmc03g0069711 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	9.1e-40	44.00	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	7.7e-15	39.53	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 23..179 e-value: 6.0E-54 score: 183.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..178
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 23..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0069711.1	Cmc03g0069711.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding