Cmc03g0069431 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0069431
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCMiso1.1chr03: 14466764 .. 14467489 (-)
RNA-Seq ExpressionCmc03g0069431
SyntenyCmc03g0069431
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTCAAAAATTTTAAATTTTCATGCAAAACAGAAGAATTCATCATTATGGCATTTTCGTTTGGGTCATCTTGCTCCAAAGATTCTCATTTTAATTCTATCTCGCATTGGTCTATCTATGTCTTCTTCTCTTTCTACTTGCAATTGCACTAGTTGTCTAAAAGCCAAAATGAAAAACTTACCTTTTCCTATGTCTTTATCTACTTCTCTTACACCACTTGCACTTGTTCACAGTGATGTATGGGGACCTTCACCAATAATCTCTTCACATGGAAGTCAATATTATGTCAGCTTTATTGACAATTTTAGCAAATTTACTTGGCTCTTTCCTATTGCTTATAAATCAGATGTTCCTTCTATTGTTCAAGAATTTAATCCTTTTATTGAAAATCAACTATCTCAAAAAATGAAAGTTTTTCGATTTGATGGTGGTGACGAATTCTGCAACAACTCTTTGCAATCCTTTTTTGAAATCAAAGGTATTTCTCACCAAAAATCATGTCCTTATACTCCTAAACAAAATGACATTGCAGAACATAAACATCGTCCCATTGTTGAAACTACAATGTCTTTAATTTTTCATTCCTCTTCTCCTCTTGAATTTTGGCCTTATGCCTTTTCTACTGTTGTTTTTCTTATTAATCGAATGCCCTCACTCTCTCTTCACGTTTTGTCACCATTTGAAAAGTTTTTTTTGGTAATACTTCTAATTTGCATCATTTAA

mRNA sequence

ATGCATTCAAAAATTTTAAATTTTCATGCAAAACAGAAGAATTCATCATTATGGCATTTTCGTTTGGGTCATCTTGCTCCAAAGATTCTCATTTTAATTCTATCTCGCATTGGTCTATCTATGTCTTCTTCTCTTTCTACTTGCAATTGCACTAGTTGTCTAAAAGCCAAAATGAAAAACTTACCTTTTCCTATGTCTTTATCTACTTCTCTTACACCACTTGCACTTGTTCACAGTGATGTATGGGGACCTTCACCAATAATCTCTTCACATGGAAGTCAATATTATGTCAGCTTTATTGACAATTTTAGCAAATTTACTTGGCTCTTTCCTATTGCTTATAAATCAGATGTTCCTTCTATTGTTCAAGAATTTAATCCTTTTATTGAAAATCAACTATCTCAAAAAATGAAAGTTTTTCGATTTGATGGTGGTGACGAATTCTGCAACAACTCTTTGCAATCCTTTTTTGAAATCAAAGGTATTTCTCACCAAAAATCATGTCCTTATACTCCTAAACAAAATGACATTGCAGAACATAAACATCGTCCCATTGTTGAAACTACAATGTCTTTAATTTTTCATTCCTCTTCTCCTCTTGAATTTTGGCCTTATGCCTTTTCTACTGTTGTTTTTCTTATTAATCGAATGCCCTCACTCTCTCTTCACGTTTTGTCACCATTTGAAAAGTTTTTTTTGGTAATACTTCTAATTTGCATCATTTAA

Coding sequence (CDS)

ATGCATTCAAAAATTTTAAATTTTCATGCAAAACAGAAGAATTCATCATTATGGCATTTTCGTTTGGGTCATCTTGCTCCAAAGATTCTCATTTTAATTCTATCTCGCATTGGTCTATCTATGTCTTCTTCTCTTTCTACTTGCAATTGCACTAGTTGTCTAAAAGCCAAAATGAAAAACTTACCTTTTCCTATGTCTTTATCTACTTCTCTTACACCACTTGCACTTGTTCACAGTGATGTATGGGGACCTTCACCAATAATCTCTTCACATGGAAGTCAATATTATGTCAGCTTTATTGACAATTTTAGCAAATTTACTTGGCTCTTTCCTATTGCTTATAAATCAGATGTTCCTTCTATTGTTCAAGAATTTAATCCTTTTATTGAAAATCAACTATCTCAAAAAATGAAAGTTTTTCGATTTGATGGTGGTGACGAATTCTGCAACAACTCTTTGCAATCCTTTTTTGAAATCAAAGGTATTTCTCACCAAAAATCATGTCCTTATACTCCTAAACAAAATGACATTGCAGAACATAAACATCGTCCCATTGTTGAAACTACAATGTCTTTAATTTTTCATTCCTCTTCTCCTCTTGAATTTTGGCCTTATGCCTTTTCTACTGTTGTTTTTCTTATTAATCGAATGCCCTCACTCTCTCTTCACGTTTTGTCACCATTTGAAAAGTTTTTTTTGGTAATACTTCTAATTTGCATCATTTAA

Protein sequence

MHSKILNFHAKQKNSSLWHFRLGHLAPKILILILSRIGLSMSSSLSTCNCTSCLKAKMKNLPFPMSLSTSLTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQEFNPFIENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRPIVETTMSLIFHSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFFLVILLICII
Homology
BLAST of Cmc03g0069431 vs. NCBI nr
Match: PKU70861.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 228.0 bits (580), Expect = 8.5e-56
Identity = 111/231 (48.05%), Postives = 153/231 (66.23%), Query Frame = 0

Query: 2   HSKILNFHAKQKNSSLWHFRLGHLAPKILILILSRIGLSMSSSLSTCNCTSCLKAKMKNL 61
           H+      A + +S++WH RLGH   + + LI S     +  S+S+  C +C   K   +
Sbjct: 435 HTSQTALQASRSSSAVWHNRLGHPNQRTMRLIASAYP-QLHISISSFQCVACSSCKGHKM 494

Query: 62  PFPMSLSTSLTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSI 121
           PF  S +   TPLAL+HSDVWGPSP+ S+ G +YYV+FID+FS++TW+FP + KSDVP I
Sbjct: 495 PFSKSCNRMKTPLALLHSDVWGPSPVTSNQGFRYYVTFIDDFSRYTWIFPCSNKSDVPHI 554

Query: 122 VQEFNPFIENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHK 181
              F  FIENQ + K+K+ R DGG E+ N +L  F    GI HQ SCPYTP+QN +AE K
Sbjct: 555 FINFKTFIENQTNYKIKILRTDGGTEYRNITLSKFLSSNGIQHQLSCPYTPEQNGVAERK 614

Query: 182 HRPIVETTMSLIFHSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFF 233
           HR I+ETT +L+  +S PL+FWP A +T V+LINR+PS + +  SPF+ F+
Sbjct: 615 HRHIIETTRTLLHQASVPLQFWPDAANTAVYLINRLPSSNTNNYSPFQSFY 664

BLAST of Cmc03g0069431 vs. NCBI nr
Match: PKU66732.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-54
Identity = 111/224 (49.55%), Postives = 153/224 (68.30%), Query Frame = 0

Query: 10  AKQKNSSLWHFRLGHLAPKIL-ILILSRIGLSMSSSLSTCNCTSCLKAKMKNLPFPMSLS 69
           A + +S +WH RLGH   + +  + ++   L++S S+S   C SC   K   +PF  S +
Sbjct: 443 ATRSSSDVWHNRLGHPNQRTMRYIAIANPQLNISCSIS--KCVSCSSCKGHKIPFTKSCN 502

Query: 70  TSLTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQEFNPF 129
              TPLAL+HSDVWGPSP++S+ G +YYV+FID+FS++TW+FPI  KSDVP I   F  F
Sbjct: 503 RMKTPLALLHSDVWGPSPVMSNQGFRYYVTFIDDFSRYTWIFPIRNKSDVPHIFINFKIF 562

Query: 130 IENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRPIVET 189
           IENQ   K+K+ R DGG E+ NN+L  FFE  GI HQ SCPYTP+QN +AE KHR I+ET
Sbjct: 563 IENQTDYKIKMLRTDGGTEYRNNTLNHFFESNGIQHQFSCPYTPEQNGVAERKHRHIIET 622

Query: 190 TMSLIFHSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFF 233
           T +L+  +S P +FWP A +T V+LINR+PS + +  SP++  +
Sbjct: 623 TRTLLHLASVPQQFWPDAANTAVYLINRLPSSNTNNRSPYQLLY 664

BLAST of Cmc03g0069431 vs. NCBI nr
Match: PKU85564.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 219.2 bits (557), Expect = 4.0e-53
Identity = 114/219 (52.05%), Postives = 151/219 (68.95%), Query Frame = 0

Query: 15  SSLWHFRLGHLAPKILILIL-SRIGLSMSSSLSTCNCTSCLKAKMKNLPFPMSLSTSLTP 74
           +SLWH RLGH   KIL  I  S   L +SS  S  +CT+C++ K+  LPF +S S + TP
Sbjct: 162 NSLWHDRLGHPHFKILKNIAQSNSDLHISSVNS--SCTTCIQCKLHKLPFEISASRTNTP 221

Query: 75  LALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQEFNPFIENQL 134
           L+LVHSDVWGPSPI S++G +++V F+D+FS++TWLFPI +KS+V S    F  FIENQ 
Sbjct: 222 LSLVHSDVWGPSPICSTNGFRFFVIFVDDFSRYTWLFPIIHKSEVTSTFITFTKFIENQT 281

Query: 135 SQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRPIVETTMSLI 194
            Q +K+ R DGG EF N +++SF   KGI HQ SCPYTP+QN +AE K+R IVET   L+
Sbjct: 282 KQSIKILRTDGGTEFNNYAMKSFLHSKGIGHQMSCPYTPEQNGVAERKNRHIVETVRFLL 341

Query: 195 FHSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFF 233
             +S P ++WP A +T V+LINRMPS +    SP +  F
Sbjct: 342 HKASMPFQYWPEATATAVYLINRMPSPNTQNKSPLQLLF 378

BLAST of Cmc03g0069431 vs. NCBI nr
Match: PKU86178.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 219.2 bits (557), Expect = 4.0e-53
Identity = 106/223 (47.53%), Postives = 146/223 (65.47%), Query Frame = 0

Query: 10  AKQKNSSLWHFRLGHLAPKILILILSRIGLSMSSSLSTCNCTSCLKAKMKNLPFPMSLST 69
           A     SLWH RLGH + ++L  +   +   +S   S+ +C +C  AK   LPF  S+S 
Sbjct: 97  AVSSTESLWHRRLGHPSYRVLQKLQKYVSPQLSFVSSSFHCNACELAKSHKLPFTSSISR 156

Query: 70  SLTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQEFNPFI 129
           S + L L+HSDVWGPS +IS  G +YY+ F+D+FS+F+WLFP+  KS+VP I   F   +
Sbjct: 157 SSSVLQLIHSDVWGPSSVISLQGYKYYIIFVDDFSRFSWLFPLTAKSEVPLIFVRFQRLV 216

Query: 130 ENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRPIVETT 189
           E Q + K+K+FR DGG E+ +   QS     GI HQ +CPYTP+QN +AE KHR I+ETT
Sbjct: 217 ERQFNAKIKIFRSDGGGEYTSKQFQSLLATSGIVHQLTCPYTPEQNGLAERKHRHIIETT 276

Query: 190 MSLIFHSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFF 233
            +L+FHS+ P +FW +A  TVV LINR+PSLS  + SP++  F
Sbjct: 277 RALLFHSNIPQKFWIHAVQTVVHLINRLPSLSNKLSSPYQMLF 319

BLAST of Cmc03g0069431 vs. NCBI nr
Match: PKU68501.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-52
Identity = 110/220 (50.00%), Postives = 148/220 (67.27%), Query Frame = 0

Query: 10  AKQKNSSLWHFRLGHLAPKILILILSRIGLSMSSSLSTCNCTSCLKAKMKNLPFPMSLST 69
           A   +S  WH RLGH  P++L  I S+    ++ S S   C++C  AK   L FP+S  +
Sbjct: 102 ATSSSSYRWHTRLGHPHPQVLASI-SQANRDLAISTSVFTCSTCKAAKSHKLVFPVSSRS 161

Query: 70  SLTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQEFNPFI 129
           ++TPLAL+H DVWGP+P IS  G +YY+  ID+FS+FTWLF +  KS+VP I+  F  FI
Sbjct: 162 NVTPLALLHFDVWGPTPTISHQGYKYYLVIIDDFSRFTWLFMLRAKSEVPKIIIHFKIFI 221

Query: 130 ENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRPIVETT 189
           ENQLS K+K  + DGG EF NN L+SF +  GI H+ SCPYTP+QN +AE K+R I+ETT
Sbjct: 222 ENQLSHKIKCIQTDGGSEFTNNELKSFLQNNGIHHRISCPYTPEQNGMAERKNRHIIETT 281

Query: 190 MSLIFHSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFE 230
            +L+  +  P +FWP A  T V LINRMPS+++   +PFE
Sbjct: 282 RTLLQTAHLPYQFWPDAALTAVHLINRMPSVTIQNKTPFE 320

BLAST of Cmc03g0069431 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.0e-44
Identity = 94/218 (43.12%), Postives = 133/218 (61.01%), Query Frame = 0

Query: 16  SLWHFRLGHLAPKILILILSRIGLS-MSSSLSTCNCTSCLKAKMKNLPFPMSLSTSLTPL 75
           S WH RLGH AP IL  ++S   LS ++ S    +C+ CL  K   +PF  S   S  PL
Sbjct: 465 SSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPL 524

Query: 76  ALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQEFNPFIENQLS 135
             ++SDVW  SPI+S    +YYV F+D+F+++TWL+P+  KS V      F   +EN+  
Sbjct: 525 EYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQ 584

Query: 136 QKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRPIVETTMSLIF 195
            ++  F  D G EF   +L  +F   GISH  S P+TP+ N ++E KHR IVET ++L+ 
Sbjct: 585 TRIGTFYSDNGGEFV--ALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLS 644

Query: 196 HSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFF 233
           H+S P  +WPYAF+  V+LINR+P+  L + SPF+K F
Sbjct: 645 HASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLF 679

BLAST of Cmc03g0069431 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.0e-39
Identity = 89/218 (40.83%), Postives = 128/218 (58.72%), Query Frame = 0

Query: 16  SLWHFRLGHLAPKILILILSRIGLS-MSSSLSTCNCTSCLKAKMKNLPFPMSLSTSLTPL 75
           S WH RLGH +  IL  ++S   L  ++ S    +C+ C   K   +PF  S  TS  PL
Sbjct: 444 SSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPL 503

Query: 76  ALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQEFNPFIENQLS 135
             ++SDVW  SPI+S    +YYV F+D+F+++TWL+P+  KS V      F   +EN+  
Sbjct: 504 EYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQ 563

Query: 136 QKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRPIVETTMSLIF 195
            ++     D G EF    L+ +    GISH  S P+TP+ N ++E KHR IVE  ++L+ 
Sbjct: 564 TRIGTLYSDNGGEFV--VLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLS 623

Query: 196 HSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFF 233
           H+S P  +WPYAFS  V+LINR+P+  L + SPF+K F
Sbjct: 624 HASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLF 658

BLAST of Cmc03g0069431 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-31
Identity = 74/217 (34.10%), Postives = 117/217 (53.92%), Query Frame = 0

Query: 6   LNFHAKQKNSSLWHFRLGHLAPKILILILSRIGLSMSSSLSTCNCTSCLKAKMKNLPFPM 65
           LN    + +  LWH R+GH++ K L ++  +  +S +   +   C  CL  K   + F  
Sbjct: 413 LNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQT 472

Query: 66  SLSTSLTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQEF 125
           S    L  L LV+SDV GP  I S  G++Y+V+FID+ S+  W++ +  K  V  + Q+F
Sbjct: 473 SSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKF 532

Query: 126 NPFIENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRPI 185
           +  +E +  +K+K  R D G E+ +   + +    GI H+K+ P TP+ N +AE  +R I
Sbjct: 533 HALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTI 592

Query: 186 VETTMSLIFHSSSPLEFWPYAFSTVVFLINRMPSLSL 223
           VE   S++  +  P  FW  A  T  +LINR PS+ L
Sbjct: 593 VEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPL 629

BLAST of Cmc03g0069431 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 116.7 bits (291), Expect = 3.6e-25
Identity = 76/224 (33.93%), Postives = 115/224 (51.34%), Query Frame = 0

Query: 7   NFHAKQKNS-SLWHFRLGHLAPKILILILSRIGLSMSSSLS----TCN-CTSCLKAKMKN 66
           + +AK KN+  LWH R GH++   L+ I  +   S  S L+    +C  C  CL  K   
Sbjct: 406 SINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQAR 465

Query: 67  LPFPMSLSTS--LTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDV 126
           LPF      +    PL +VHSDV GP   ++     Y+V F+D F+ +   + I YKSDV
Sbjct: 466 LPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDV 525

Query: 127 PSIVQEFNPFIENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIA 186
            S+ Q+F    E   + K+     D G E+ +N ++ F   KGIS+  + P+TP+ N ++
Sbjct: 526 FSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVS 585

Query: 187 EHKHRPIVETTMSLIFHSSSPLEFWPYAFSTVVFLINRMPSLSL 223
           E   R I E   +++  +     FW  A  T  +LINR+PS +L
Sbjct: 586 ERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRAL 629

BLAST of Cmc03g0069431 vs. ExPASy Swiss-Prot
Match: Q07163 (Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae OX=4932 GN=TY1B PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-11
Identity = 42/152 (27.63%), Postives = 75/152 (49.34%), Query Frame = 0

Query: 65  MSLSTSLTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQE 124
           +    S  P   +H+D++GP   + +    Y++SF D  +KF W++P+  + +  SI+  
Sbjct: 656 LKYQNSYEPFQYLHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRRE-DSILDV 715

Query: 125 FN---PFIENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHK 184
           F     FI+NQ    + V + D G E+ N +L  F E  GI+   +     + + +AE  
Sbjct: 716 FTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERL 775

Query: 185 HRPIVETTMSLIFHSSSPLEFWPYA--FSTVV 212
           +R +++   + +  S  P   W  A  FST+V
Sbjct: 776 NRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIV 806

BLAST of Cmc03g0069431 vs. ExPASy TrEMBL
Match: A0A2I0W5D3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca019118 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 4.1e-56
Identity = 111/231 (48.05%), Postives = 153/231 (66.23%), Query Frame = 0

Query: 2   HSKILNFHAKQKNSSLWHFRLGHLAPKILILILSRIGLSMSSSLSTCNCTSCLKAKMKNL 61
           H+      A + +S++WH RLGH   + + LI S     +  S+S+  C +C   K   +
Sbjct: 435 HTSQTALQASRSSSAVWHNRLGHPNQRTMRLIASAYP-QLHISISSFQCVACSSCKGHKM 494

Query: 62  PFPMSLSTSLTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSI 121
           PF  S +   TPLAL+HSDVWGPSP+ S+ G +YYV+FID+FS++TW+FP + KSDVP I
Sbjct: 495 PFSKSCNRMKTPLALLHSDVWGPSPVTSNQGFRYYVTFIDDFSRYTWIFPCSNKSDVPHI 554

Query: 122 VQEFNPFIENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHK 181
              F  FIENQ + K+K+ R DGG E+ N +L  F    GI HQ SCPYTP+QN +AE K
Sbjct: 555 FINFKTFIENQTNYKIKILRTDGGTEYRNITLSKFLSSNGIQHQLSCPYTPEQNGVAERK 614

Query: 182 HRPIVETTMSLIFHSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFF 233
           HR I+ETT +L+  +S PL+FWP A +T V+LINR+PS + +  SPF+ F+
Sbjct: 615 HRHIIETTRTLLHQASVPLQFWPDAANTAVYLINRLPSSNTNNYSPFQSFY 664

BLAST of Cmc03g0069431 vs. ExPASy TrEMBL
Match: A0A2I0VTJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca014151 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 7.8e-55
Identity = 111/224 (49.55%), Postives = 153/224 (68.30%), Query Frame = 0

Query: 10  AKQKNSSLWHFRLGHLAPKIL-ILILSRIGLSMSSSLSTCNCTSCLKAKMKNLPFPMSLS 69
           A + +S +WH RLGH   + +  + ++   L++S S+S   C SC   K   +PF  S +
Sbjct: 443 ATRSSSDVWHNRLGHPNQRTMRYIAIANPQLNISCSIS--KCVSCSSCKGHKIPFTKSCN 502

Query: 70  TSLTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQEFNPF 129
              TPLAL+HSDVWGPSP++S+ G +YYV+FID+FS++TW+FPI  KSDVP I   F  F
Sbjct: 503 RMKTPLALLHSDVWGPSPVMSNQGFRYYVTFIDDFSRYTWIFPIRNKSDVPHIFINFKIF 562

Query: 130 IENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRPIVET 189
           IENQ   K+K+ R DGG E+ NN+L  FFE  GI HQ SCPYTP+QN +AE KHR I+ET
Sbjct: 563 IENQTDYKIKMLRTDGGTEYRNNTLNHFFESNGIQHQFSCPYTPEQNGVAERKHRHIIET 622

Query: 190 TMSLIFHSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFF 233
           T +L+  +S P +FWP A +T V+LINR+PS + +  SP++  +
Sbjct: 623 TRTLLHLASVPQQFWPDAANTAVYLINRLPSSNTNNRSPYQLLY 664

BLAST of Cmc03g0069431 vs. ExPASy TrEMBL
Match: A0A2N9G7E3 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23257 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 112/220 (50.91%), Postives = 149/220 (67.73%), Query Frame = 0

Query: 14  NSSLWHFRLGHLAPKILILILSRIGLS-MSSSLSTCNCTSCLKAKMKNLPFPMSLSTSLT 73
           +SS WH RLGH   KIL  +   +  S + SS S   C  C   KM  LPF  S + +  
Sbjct: 492 SSSTWHSRLGHPNSKILQSVFKHLPTSPIDSSSSNSFCKHCTLGKMSQLPFSHSCTHATE 551

Query: 74  PLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQEFNPFIENQ 133
           PL LVHSDVWGP+PI S +G++YYVSFID+FSKFTW FP+ +KS V S    F   +EN 
Sbjct: 552 PLQLVHSDVWGPAPITSINGTRYYVSFIDDFSKFTWFFPLKHKSQVLSTFVHFKSTLENL 611

Query: 134 LSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRPIVETTMSL 193
           L+ K+KV R D G E+ +++ Q +   +GI HQ SCP+TP+QN +AE KHR I+ET ++L
Sbjct: 612 LNYKLKVLRTDCGGEYTDSAFQHYCSSQGIFHQFSCPHTPQQNGVAERKHRHIIETALTL 671

Query: 194 IFHSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFF 233
           I  SS PL +WPYAF++ +FLINR+P++SLH+ SP+E  F
Sbjct: 672 ISQSSLPLSYWPYAFASSIFLINRLPTVSLHLKSPWEVLF 711

BLAST of Cmc03g0069431 vs. ExPASy TrEMBL
Match: A0A2N9GRJ0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30097 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 108/228 (47.37%), Postives = 156/228 (68.42%), Query Frame = 0

Query: 8   FHAKQKNSSLWHFRLGHLAPKILILILSR---IGLSMSSSLSTCNCTSCLKAKMKNLPFP 67
           F   +   S+WH RLGH    +L  +L++   + ++ +   S C CT C++ K+   PFP
Sbjct: 521 FLGTKGTKSVWHSRLGHPQDCVLHSVLNKQPWLSVNTAKFSSDC-CTHCVQGKLHQFPFP 580

Query: 68  MSLSTSLTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQE 127
            S  T+  PL LVHSDVWGP+P+ S +G+++YVSF+D+F++FTWLFPI +KS V +  Q 
Sbjct: 581 SSSFTATAPLELVHSDVWGPAPVTSINGTRFYVSFVDHFTRFTWLFPIKHKSQVLATFQH 640

Query: 128 FNPFIENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRP 187
           F   +EN L+ ++KV R D G E+ N++ +SF   +GI HQ SCP+TP+QN +AE KHR 
Sbjct: 641 FTATMENILNTRIKVLRTDCGGEYTNSAFESFCSTRGILHQFSCPHTPQQNGVAERKHRH 700

Query: 188 IVETTMSLIFHSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFF 233
           IVET ++LI  SS PL++WPYAFST ++LINRMP+ +L   SP++  F
Sbjct: 701 IVETALTLISESSLPLQYWPYAFSTAIYLINRMPTPNLKFTSPWQLLF 747

BLAST of Cmc03g0069431 vs. ExPASy TrEMBL
Match: A0A2N9FMC6 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16294 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 108/228 (47.37%), Postives = 156/228 (68.42%), Query Frame = 0

Query: 8   FHAKQKNSSLWHFRLGHLAPKILILILSR---IGLSMSSSLSTCNCTSCLKAKMKNLPFP 67
           F   +   S+WH RLGH    +L  +L++   + ++ +   S C CT C++ K+   PFP
Sbjct: 348 FLGTKGTKSVWHSRLGHPQDCVLHSVLNKQPWLSVNTAKFSSDC-CTHCVQGKLHQFPFP 407

Query: 68  MSLSTSLTPLALVHSDVWGPSPIISSHGSQYYVSFIDNFSKFTWLFPIAYKSDVPSIVQE 127
            S  T+  PL LVHSDVWGP+P+ S +G+++YVSF+D+F++FTWLFPI +KS V +  Q 
Sbjct: 408 SSSFTATAPLELVHSDVWGPAPVTSINGTRFYVSFVDHFTRFTWLFPIKHKSQVLATFQH 467

Query: 128 FNPFIENQLSQKMKVFRFDGGDEFCNNSLQSFFEIKGISHQKSCPYTPKQNDIAEHKHRP 187
           F   +EN L+ ++KV R D G E+ N++ +SF   +GI HQ SCP+TP+QN +AE KHR 
Sbjct: 468 FTATMENILNTRIKVLRTDCGGEYTNSAFESFCSTRGILHQFSCPHTPQQNGVAERKHRH 527

Query: 188 IVETTMSLIFHSSSPLEFWPYAFSTVVFLINRMPSLSLHVLSPFEKFF 233
           IVET ++LI  SS PL++WPYAFST ++LINRMP+ +L   SP++  F
Sbjct: 528 IVETALTLISESSLPLQYWPYAFSTAIYLINRMPTPNLKFTSPWQLLF 574

BLAST of Cmc03g0069431 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 43.1 bits (100), Expect = 3.6e-04
Identity = 23/67 (34.33%), Postives = 34/67 (50.75%), Query Frame = 0

Query: 17  LWHFRLGHLAPKILILILSRIGLSMSSSLSTCNCTSCLKAKMKNLPFPMSLSTSLTPLAL 76
           LWH RL H++ + + L++ +  L  S   S   C  C+  K   + F     T+  PL  
Sbjct: 71  LWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDY 130

Query: 77  VHSDVWG 84
           VHSD+WG
Sbjct: 131 VHSDLWG 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PKU70861.18.5e-5648.05Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu... [more]
PKU66732.11.6e-5449.55Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu... [more]
PKU85564.14.0e-5352.05Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu... [more]
PKU86178.14.0e-5347.53Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu... [more]
PKU68501.11.2e-5250.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu... [more]
Match NameE-valueIdentityDescription
Q94HW26.0e-4443.12Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT942.0e-3940.83Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109783.4e-3134.10Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041463.6e-2533.93Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q071632.3e-1127.63Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae OX=4932 GN=TY1B ... [more]
Match NameE-valueIdentityDescription
A0A2I0W5D34.1e-5648.05Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena... [more]
A0A2I0VTJ17.8e-5549.55Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena... [more]
A0A2N9G7E31.0e-5450.91Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9GRJ02.3e-5447.37Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30097 PE=4 SV=1[more]
A0A2N9FMC62.3e-5447.37Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
Match NameE-valueIdentityDescription
ATMG00300.13.6e-0434.33Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 66..236
e-value: 6.0E-31
score: 109.3
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 73..172
e-value: 7.1E-8
score: 32.7
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 69..235
score: 20.090399
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 60..211
NoneNo IPR availablePANTHERPTHR11439:SF324RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 60..211
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 71..230

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0069431.1Cmc03g0069431.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding