Cmc03g0069391 (gene) Melon (Charmono) v1.1

Overview
NameCmc03g0069391
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr03: 14418635 .. 14418931 (+)
RNA-Seq ExpressionCmc03g0069391
SyntenyCmc03g0069391
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAAGATCTCATATGCTTCAGTAGTTGGGAGCTTAATGTATGTCGTGGTATGTACTAGACTTGATATTGCTCATGTTATTGGTGTTGTTAGTCATTTTATGTCTAATCCAGGAAAACAGCATTGGGAGGTCGTCAAATGCATCATGAGATATTTGAGAGGTATTTTCAGTTTGAAGCTTACATTTGGGGATGGAAAGTTAATACTTGCTGATTCAGATATGATAGGGGACTTAGATAGCAGAAAGTCTACTTCTAGTTACTTGATGACATTTGCAAGTTATGCAGTATCTTAA

mRNA sequence

ATGAATAAGATCTCATATGCTTCAGTAGTTGGGAGCTTAATGTATGTCGTGGTATGTACTAGACTTGATATTGCTCATGTTATTGGTGTTGTTAGTCATTTTATGTCTAATCCAGGAAAACAGCATTGGGAGGTCGTCAAATGCATCATGAGATATTTGAGAGGTATTTTCAGTTTGAAGCTTACATTTGGGGATGGAAAGTTAATACTTGCTGATTCAGATATGATAGGGGACTTAGATAGCAGAAAGTCTACTTCTAGTTACTTGATGACATTTGCAAGTTATGCAGTATCTTAA

Coding sequence (CDS)

ATGAATAAGATCTCATATGCTTCAGTAGTTGGGAGCTTAATGTATGTCGTGGTATGTACTAGACTTGATATTGCTCATGTTATTGGTGTTGTTAGTCATTTTATGTCTAATCCAGGAAAACAGCATTGGGAGGTCGTCAAATGCATCATGAGATATTTGAGAGGTATTTTCAGTTTGAAGCTTACATTTGGGGATGGAAAGTTAATACTTGCTGATTCAGATATGATAGGGGACTTAGATAGCAGAAAGTCTACTTCTAGTTACTTGATGACATTTGCAAGTTATGCAGTATCTTAA

Protein sequence

MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLKLTFGDGKLILADSDMIGDLDSRKSTSSYLMTFASYAVS
Homology
[Close]
BLAST of Cmc03g0069391 vs. NCBI nr
Match: KAA0063880.1 (putative retrotransposon [Cucumis melo var. makuwa] >TYK15923.1 putative retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.0e-43
Identity = 94/98 (95.92%), Postives = 94/98 (95.92%), Query Frame = 0 

Query: 1   MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
           MNKISYASVVGSLMYVVVCTR DIAHVIGVVSHFMSN GKQHWE VKCIMRYLRGIFSLK
Sbjct: 344 MNKISYASVVGSLMYVVVCTRPDIAHVIGVVSHFMSNSGKQHWEAVKCIMRYLRGIFSLK 403

Query: 61  LTFGDGKLILADSDMIGDLDSRKSTSSYLMTFASYAVS 99
           LTFGDGK ILADSDMIGDLDSRKSTSSYLMTFASYAVS
Sbjct: 404 LTFGDGKSILADSDMIGDLDSRKSTSSYLMTFASYAVS 441

[Close]
BLAST of Cmc03g0069391 vs. NCBI nr
Match: CAN66323.1 (hypothetical protein VITISV_007384 [Vitis vinifera])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 1    MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
            M ++ YASVVGSL+YV+VC R DIA+ +GVVS F+SNPG+ HWE VK IMRYLRGI  LK
Sbjct: 1036 MRRVLYASVVGSLIYVMVCIRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGISKLK 1095

Query: 61   LTFGDGKLIL---ADSDMIGDLDSRKSTSSYLMTFASYAVS 99
            LTFG GK IL    DSDM GD+D+R+STSSYLMTF+  AVS
Sbjct: 1096 LTFGSGKPILVGYTDSDMAGDVDNRRSTSSYLMTFSGGAVS 1136

[Close]
BLAST of Cmc03g0069391 vs. NCBI nr
Match: RVW79299.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-28
Identity = 67/101 (66.34%), Postives = 79/101 (78.22%), Query Frame = 0 

Query: 1   MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
           M ++ YAS VGSLMY +VCTR DIA+ +GVVS F+SNPG+ HWE VK IMRYLRG   LK
Sbjct: 705 MRRVPYASAVGSLMYAMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLK 764

Query: 61  LTFGDGKLILA---DSDMIGDLDSRKSTSSYLMTFASYAVS 99
           LTFG GK IL    DSDM+GD+D+R+STS YLMTF+  AVS
Sbjct: 765 LTFGSGKPILVGYIDSDMVGDVDNRRSTSGYLMTFSGGAVS 805

[Close]
BLAST of Cmc03g0069391 vs. NCBI nr
Match: RVW68760.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 134.0 bits (336), Expect = 6.8e-28
Identity = 68/101 (67.33%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 1   MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
           M ++ YAS VGSLMYV+VCTR DIA+ +GVVS F+SNPG+ HWE VK IMRYLRG   LK
Sbjct: 747 MRRVPYASAVGSLMYVMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLK 806

Query: 61  LTFGDGKLIL---ADSDMIGDLDSRKSTSSYLMTFASYAVS 99
           LTFG GK IL    DSDM GD+D+R+STS YLMTF   AVS
Sbjct: 807 LTFGSGKPILVGYTDSDMAGDVDNRRSTSGYLMTFLGGAVS 847

[Close]
BLAST of Cmc03g0069391 vs. NCBI nr
Match: CAN75440.1 (hypothetical protein VITISV_007304 [Vitis vinifera])

HSP 1 Score: 134.0 bits (336), Expect = 6.8e-28
Identity = 67/101 (66.34%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 1    MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
            M ++ YAS +GSLMY +VCTR DIA+ +GVVS F+SNPG+ HWE VK IMRYLRG   LK
Sbjct: 1077 MRRVPYASAIGSLMYAMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLK 1136

Query: 61   LTFGDGKLIL---ADSDMIGDLDSRKSTSSYLMTFASYAVS 99
            LTFG GK IL    DSDM GD+D+RKSTS YLMTF+  AVS
Sbjct: 1137 LTFGSGKPILVGYTDSDMAGDVDNRKSTSGYLMTFSGGAVS 1177

[Close]
BLAST of Cmc03g0069391 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-25
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = 0 

Query: 1    MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
            M K+ Y+S VGSLMY +VCTR DIAH +GVVS F+ NPGK+HWE VK I+RYLRG     
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LTFGDGKLIL---ADSDMIGDLDSRKSTSSYLMTFASYAVS 99
            L FG    IL    D+DM GD+D+RKS++ YL TF+  A+S
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAIS 1206

[Close]
BLAST of Cmc03g0069391 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-14
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 0 

Query: 1   MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
           M  + Y S VG++MY++V TR D+A  +GV+S F S+P   HW+ +K ++RYL+   +  
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LTF---GDGKLI-LADSDMIGDLDSRKSTSSYLMTFASYAVS 99
           L F   G  KL+  +D+D  GD++SR+STS YL       VS
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVS 102

[Close]
BLAST of Cmc03g0069391 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-09
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 0 

Query: 8    SVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLKLTFG--- 67
            S++G LMY+++CTR D+   + ++S + S    + W+ +K ++RYL+G   +KL F    
Sbjct: 1183 SLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNL 1242

Query: 68   --DGKLI-LADSDMIGDLDSRKSTSSYL 90
              + K+I   DSD  G    RKST+ YL
Sbjct: 1243 AFENKIIGYVDSDWAGSEIDRKSTTGYL 1270

[Close]
BLAST of Cmc03g0069391 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 29/97 (29.90%), Postives = 49/97 (50.52%), Query Frame = 0 

Query: 6    YASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLKLTFGD 65
            Y  +VGSL Y+   TR D+++ +  +S +M  P   HW  +K ++RYL G     +    
Sbjct: 1228 YRGIVGSLQYLAF-TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   GKLI----LADSDMIGDLDSRKSTSSYLMTFASYAVS 99
            G  +     +D+D  GD D   ST+ Y++    + +S
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPIS 1323

[Close]
BLAST of Cmc03g0069391 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-06
Identity = 31/97 (31.96%), Postives = 52/97 (53.61%), Query Frame = 0 

Query: 6    YASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLKLTFGD 65
            Y  +VGSL Y+   TR DI++ +  +S FM  P ++H + +K I+RYL G  +  +    
Sbjct: 1245 YRGIVGSLQYLAF-TRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   GKLI----LADSDMIGDLDSRKSTSSYLMTFASYAVS 99
            G  +     +D+D  GD D   ST+ Y++    + +S
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPIS 1340

[Close]
BLAST of Cmc03g0069391 vs. ExPASy TrEMBL
Match: A0A5A7V9H2 (Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00290 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.6e-44
Identity = 94/98 (95.92%), Postives = 94/98 (95.92%), Query Frame = 0 

Query: 1   MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
           MNKISYASVVGSLMYVVVCTR DIAHVIGVVSHFMSN GKQHWE VKCIMRYLRGIFSLK
Sbjct: 344 MNKISYASVVGSLMYVVVCTRPDIAHVIGVVSHFMSNSGKQHWEAVKCIMRYLRGIFSLK 403

Query: 61  LTFGDGKLILADSDMIGDLDSRKSTSSYLMTFASYAVS 99
           LTFGDGK ILADSDMIGDLDSRKSTSSYLMTFASYAVS
Sbjct: 404 LTFGDGKSILADSDMIGDLDSRKSTSSYLMTFASYAVS 441

[Close]
BLAST of Cmc03g0069391 vs. ExPASy TrEMBL
Match: A5C3L0 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_007384 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 69/101 (68.32%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 1    MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
            M ++ YASVVGSL+YV+VC R DIA+ +GVVS F+SNPG+ HWE VK IMRYLRGI  LK
Sbjct: 1036 MRRVLYASVVGSLIYVMVCIRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGISKLK 1095

Query: 61   LTFGDGKLIL---ADSDMIGDLDSRKSTSSYLMTFASYAVS 99
            LTFG GK IL    DSDM GD+D+R+STSSYLMTF+  AVS
Sbjct: 1096 LTFGSGKPILVGYTDSDMAGDVDNRRSTSSYLMTFSGGAVS 1136

[Close]
BLAST of Cmc03g0069391 vs. ExPASy TrEMBL
Match: A0A438H4H9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_591 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.9e-28
Identity = 67/101 (66.34%), Postives = 79/101 (78.22%), Query Frame = 0 

Query: 1   MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
           M ++ YAS VGSLMY +VCTR DIA+ +GVVS F+SNPG+ HWE VK IMRYLRG   LK
Sbjct: 705 MRRVPYASAVGSLMYAMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLK 764

Query: 61  LTFGDGKLILA---DSDMIGDLDSRKSTSSYLMTFASYAVS 99
           LTFG GK IL    DSDM+GD+D+R+STS YLMTF+  AVS
Sbjct: 765 LTFGSGKPILVGYIDSDMVGDVDNRRSTSGYLMTFSGGAVS 805

[Close]
BLAST of Cmc03g0069391 vs. ExPASy TrEMBL
Match: A5C9D7 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_007304 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 67/101 (66.34%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 1    MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
            M ++ YAS +GSLMY +VCTR DIA+ +GVVS F+SNPG+ HWE VK IMRYLRG   LK
Sbjct: 1077 MRRVPYASAIGSLMYAMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLK 1136

Query: 61   LTFGDGKLIL---ADSDMIGDLDSRKSTSSYLMTFASYAVS 99
            LTFG GK IL    DSDM GD+D+RKSTS YLMTF+  AVS
Sbjct: 1137 LTFGSGKPILVGYTDSDMAGDVDNRKSTSGYLMTFSGGAVS 1177

[Close]
BLAST of Cmc03g0069391 vs. ExPASy TrEMBL
Match: A0A438G971 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_20 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 68/101 (67.33%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 1   MNKISYASVVGSLMYVVVCTRLDIAHVIGVVSHFMSNPGKQHWEVVKCIMRYLRGIFSLK 60
           M ++ YAS VGSLMYV+VCTR DIA+ +GVVS F+SNPG+ HWE VK IMRYLRG   LK
Sbjct: 747 MRRVPYASAVGSLMYVMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLK 806

Query: 61  LTFGDGKLIL---ADSDMIGDLDSRKSTSSYLMTFASYAVS 99
           LTFG GK IL    DSDM GD+D+R+STS YLMTF   AVS
Sbjct: 807 LTFGSGKPILVGYTDSDMAGDVDNRRSTSGYLMTFLGGAVS 847

The following BLAST results are available for this feature:
BLAST of Cmc03g0069391 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0063880.12.0e-4395.92putative retrotransposon [Cucumis melo var. makuwa] >TYK15923.1 putative retrotr... [more]
CAN66323.12.3e-2868.32hypothetical protein VITISV_007384 [Vitis vinifera][more]
RVW79299.14.0e-2866.34Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW68760.16.8e-2867.33Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
CAN75440.16.8e-2866.34hypothetical protein VITISV_007304 [Vitis vinifera][more]
BLAST of Cmc03g0069391 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109782.5e-2557.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P0CV723.4e-1441.18Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
P041461.9e-0936.36Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q9ZT942.0e-0629.90Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW22.6e-0631.96Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
BLAST of Cmc03g0069391 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V9H29.6e-4495.92Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A5C3L01.1e-2868.32Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... [more]
A0A438H4H91.9e-2866.34Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A5C9D73.3e-2866.34Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... [more]
A0A438G9713.3e-2867.33Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
BLAST of Cmc03g0069391 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc03g0069391.1Cmc03g0069391.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding