Cmc03g0069381 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc03g0069381
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr03: 14392345 .. 14392818 (-)
RNA-Seq Expression	Cmc03g0069381
Synteny	Cmc03g0069381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGATCATCTTGGCAAGCGTAGTAGATACCAGAGGACCAGAAGTTTCCCTGTCCTCCAAACTAGTGGTAAGAGAGTACCCCGATGTTTTCTCCGACGAGCTTCAAGGACTTTCGCCTCCCAGGGAGATAGACTTCGCCATCGAGTTAGAGCCCGACACAGCTCCTATCTCGAGGGCCTCTTACAGAATGGCTCCAGCCGAGCTAAAGGAGCTGAAGGTACAGCTGCAAGAGTTGCTGGACAAGGGTTTCATCCGACCCAGTGTGTCACCTTGGGGAGCCCCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATTCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTTAAGAACCGCTACCCCTTGTCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATCGACCTGTGA

mRNA sequence

ATGAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGATCATCTTGGCAAGCGTAGTAGATACCAGAGGACCAGAAGTTTCCCTGTCCTCCAAACTAGTGGTAAGAGAGTACCCCGATGTTTTCTCCGACGAGCTTCAAGGACTTTCGCCTCCCAGGGAGATAGACTTCGCCATCGAGTTAGAGCCCGACACAGCTCCTATCTCGAGGGCCTCTTACAGAATGGCTCCAGCCGAGCTAAAGGAGCTGAAGGTACAGCTGCAAGAGTTGCTGGACAAGGGTTTCATCCGACCCAGTGTGTCACCTTGGGGAGCCCCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATTCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTTAAGAACCGCTACCCCTTGTCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATCGACCTGTGA

Coding sequence (CDS)

ATGAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGATCATCTTGGCAAGCGTAGTAGATACCAGAGGACCAGAAGTTTCCCTGTCCTCCAAACTAGTGGTAAGAGAGTACCCCGATGTTTTCTCCGACGAGCTTCAAGGACTTTCGCCTCCCAGGGAGATAGACTTCGCCATCGAGTTAGAGCCCGACACAGCTCCTATCTCGAGGGCCTCTTACAGAATGGCTCCAGCCGAGCTAAAGGAGCTGAAGGTACAGCTGCAAGAGTTGCTGGACAAGGGTTTCATCCGACCCAGTGTGTCACCTTGGGGAGCCCCAGTGTTGTTTGTGAAGAAGAAGGATGGGTCGATTCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTTAAGAACCGCTACCCCTTGTCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCTAAGATCGACCTGTGA

Protein sequence

MKASKLLSQGTWIILASVVDTRGPEVSLSSKLVVREYPDVFSDELQGLSPPREIDFAIELEPDTAPISRASYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDL

Homology

[Close]

BLAST of Cmc03g0069381 vs. NCBI nr
Match: KAA0040547.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.3 bits (734), Expect = 7.7e-74
Identity = 145/157 (92.36%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MKASKLLSQGTWIILASVVDTRGPEVSLSSKLVVREYPDVFSDELQGLSPPREIDFAIEL 60
           MKASKLLSQGTW ILASVVD R PEVSLSS+ VVREYPDVFSDEL GL PPRE+DFAIEL
Sbjct: 533 MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFSDELPGLPPPREVDFAIEL 592

Query: 61  EPDTAPISRASYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCI 120
           EP TAPISRA YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCI
Sbjct: 593 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 652

Query: 121 DYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDL 158
           DYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDL
Sbjct: 653 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL 689

[Close]

BLAST of Cmc03g0069381 vs. NCBI nr
Match: KAA0031437.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 144/157 (91.72%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MKASKLLSQGTWIILASVVDTRGPEVSLSSKLVVREYPDVFSDELQGLSPPREIDFAIEL 60
           MKASKLLSQGTW ILASVVD R PEVSLSS+ VVREYPDVF DEL GL PPRE+DFAIEL
Sbjct: 481 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 540

Query: 61  EPDTAPISRASYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCI 120
           EP TAPISRA YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCI
Sbjct: 541 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 600

Query: 121 DYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDL 158
           DYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDL
Sbjct: 601 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL 637

[Close]

BLAST of Cmc03g0069381 vs. NCBI nr
Match: KAA0033825.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 144/157 (91.72%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1    MKASKLLSQGTWIILASVVDTRGPEVSLSSKLVVREYPDVFSDELQGLSPPREIDFAIEL 60
            MKASKLLSQGTW ILASVVD R PEVSLSS+ VVREYPDVF DEL GL PPRE+DFAIEL
Sbjct: 1145 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 1204

Query: 61   EPDTAPISRASYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCI 120
            EP TAPISRA YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCI
Sbjct: 1205 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 1264

Query: 121  DYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDL 158
            DYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDL
Sbjct: 1265 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL 1301

[Close]

BLAST of Cmc03g0069381 vs. NCBI nr
Match: KAA0025848.1 (pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo var. makuwa] >KAA0036593.1 pol protein [Cucumis melo var. makuwa] >KAA0036739.1 pol protein [Cucumis melo var. makuwa] >KAA0037408.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 144/157 (91.72%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MKASKLLSQGTWIILASVVDTRGPEVSLSSKLVVREYPDVFSDELQGLSPPREIDFAIEL 60
           MKASKLLSQGTW ILASVVD R PEVSLSS+ VVREYPDVF DEL GL PPRE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPDTAPISRASYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCI 120
           EP TAPISRA YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDL 158
           DYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDL
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL 696

[Close]

BLAST of Cmc03g0069381 vs. NCBI nr
Match: TYK20443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 144/157 (91.72%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1    MKASKLLSQGTWIILASVVDTRGPEVSLSSKLVVREYPDVFSDELQGLSPPREIDFAIEL 60
            MKASKLLSQGTW ILASVVD R PEVSLSS+ VVREYPDVF DEL GL PPRE+DFAIEL
Sbjct: 862  MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 921

Query: 61   EPDTAPISRASYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCI 120
            EP TAPISRA YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCI
Sbjct: 922  EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 981

Query: 121  DYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDL 158
            DYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDL
Sbjct: 982  DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL 1018

[Close]

BLAST of Cmc03g0069381 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 92.0 bits (227), Expect = 6.2e-18
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 35  REYPDVFSDELQGLSPPREIDF-------AIELEPDTAPISRASYRMAPAELKELKVQLQ 94
           ++Y ++  ++L    PPR  D         IE++P         Y +     +E+   +Q
Sbjct: 562 QKYREIIRNDL----PPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 621

Query: 95  ELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQ 154
           +LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PL RID+L  ++ 
Sbjct: 622 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 681

Query: 155 GATVFSKIDL 158
            A +F+ +DL
Sbjct: 682 NAQIFTTLDL 687

[Close]

BLAST of Cmc03g0069381 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 6.2e-18
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 35  REYPDVFSDELQGLSPPREIDF-------AIELEPDTAPISRASYRMAPAELKELKVQLQ 94
           ++Y ++  ++L    PPR  D         IE++P         Y +     +E+   +Q
Sbjct: 588 QKYREIIRNDL----PPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 647

Query: 95  ELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQ 154
           +LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PL RID+L  ++ 
Sbjct: 648 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 707

Query: 155 GATVFSKIDL 158
            A +F+ +DL
Sbjct: 708 NAQIFTTLDL 713

[Close]

BLAST of Cmc03g0069381 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 47/143 (32.87%), Postives = 78/143 (54.55%), Query Frame = 0


Query: 35  REYPDVFSDELQGLSPPREIDFAIELEP--------------DTAPISRASYRMAPAELK 94
           + +P++F  +L+ +       FA+E EP              D  P+   +YR   ++++
Sbjct: 269 KNFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVE 328

Query: 95  ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG------SIRLCIDYRELNKVTVKNRY 154
           E++ Q+Q+L+    + PSVS + +P+L V KK          RL IDYR++NK  + +++
Sbjct: 329 EIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKF 388

Query: 155 PLSRIDDLFDQLQGATVFSKIDL 158
           PL RIDD+ DQL  A  FS +DL
Sbjct: 389 PLPRIDDILDQLGRAKYFSCLDL 411

[Close]

BLAST of Cmc03g0069381 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-15
Identity = 40/127 (31.50%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 33  VVREYPDVFSD-ELQGLSPP-REIDFAIELEPDTAPISRASYRMAPAELKELKVQLQELL 92
           + +E+ D+ ++   + L  P + ++F +EL  +   +   +Y + P +++ +  ++ + L
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436

Query: 93  DKGFIRPSVSPWGAPVLFVKKKDGSIRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGAT 152
             G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPL  I+ L  ++QG+T
Sbjct: 437 KSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGST 496

Query: 153 VFSKIDL 158
           +F+K+DL
Sbjct: 497 IFTKLDL 503

[Close]

BLAST of Cmc03g0069381 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-15
Identity = 40/127 (31.50%), Postives = 77/127 (60.63%), Query Frame = 0


Query: 33  VVREYPDVFSD-ELQGLSPP-REIDFAIELEPDTAPISRASYRMAPAELKELKVQLQELL 92
           + +E+ D+ ++   + L  P + ++F +EL  +   +   +Y + P +++ +  ++ + L
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436

Query: 93  DKGFIRPSVSPWGAPVLFVKKKDGSIRLCIDYRELNKVTVKNRYPLSRIDDLFDQLQGAT 152
             G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPL  I+ L  ++QG+T
Sbjct: 437 KSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGST 496

Query: 153 VFSKIDL 158
           +F+K+DL
Sbjct: 497 IFTKLDL 503

[Close]

BLAST of Cmc03g0069381 vs. ExPASy TrEMBL
Match: A0A5A7TG62 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001030 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.7e-74
Identity = 145/157 (92.36%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MKASKLLSQGTWIILASVVDTRGPEVSLSSKLVVREYPDVFSDELQGLSPPREIDFAIEL 60
           MKASKLLSQGTW ILASVVD R PEVSLSS+ VVREYPDVFSDEL GL PPRE+DFAIEL
Sbjct: 533 MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFSDELPGLPPPREVDFAIEL 592

Query: 61  EPDTAPISRASYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCI 120
           EP TAPISRA YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCI
Sbjct: 593 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 652

Query: 121 DYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDL 158
           DYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDL
Sbjct: 653 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL 689

[Close]

BLAST of Cmc03g0069381 vs. ExPASy TrEMBL
Match: A0A5D3CQB5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001420 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 144/157 (91.72%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MKASKLLSQGTWIILASVVDTRGPEVSLSSKLVVREYPDVFSDELQGLSPPREIDFAIEL 60
           MKASKLLSQGTW ILASVVD R PEVSLSS+ VVREYPDVF DEL GL PPRE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPDTAPISRASYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCI 120
           EP TAPISRA YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDL 158
           DYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDL
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL 696

[Close]

BLAST of Cmc03g0069381 vs. ExPASy TrEMBL
Match: A0A5A7UBS1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00110 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 144/157 (91.72%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MKASKLLSQGTWIILASVVDTRGPEVSLSSKLVVREYPDVFSDELQGLSPPREIDFAIEL 60
           MKASKLLSQGTW ILASVVD R PEVSLSS+ VVREYPDVF DEL GL PPRE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPDTAPISRASYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCI 120
           EP TAPISRA YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDL 158
           DYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDL
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL 696

[Close]

BLAST of Cmc03g0069381 vs. ExPASy TrEMBL
Match: A0A5A7TEQ2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00410 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 144/157 (91.72%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MKASKLLSQGTWIILASVVDTRGPEVSLSSKLVVREYPDVFSDELQGLSPPREIDFAIEL 60
           MKASKLLSQGTW ILASVVD R PEVSLSS+ VVREYPDVF DEL GL PPRE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPDTAPISRASYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCI 120
           EP TAPISRA YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDL 158
           DYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDL
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL 696

[Close]

BLAST of Cmc03g0069381 vs. ExPASy TrEMBL
Match: A0A5A7TSL0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001340 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 144/157 (91.72%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MKASKLLSQGTWIILASVVDTRGPEVSLSSKLVVREYPDVFSDELQGLSPPREIDFAIEL 60
           MKASKLLSQGTW ILASVVD R PEVSLSS+ VVREYPDVF DEL GL PPRE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPDTAPISRASYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSIRLCI 120
           EP TAPISRA YRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGS+RLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYRELNKVTVKNRYPLSRIDDLFDQLQGATVFSKIDL 158
           DYRELNKVTVKNRYPL RIDDLFDQLQGATVFSKIDL
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDL 696

[Close]

BLAST of Cmc03g0069381 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 9.0e-04
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 82  LKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG 115
           LK  L E+L+   I+PS+SP+ +PVL V+KKDG
Sbjct: 45  LKNWLGEMLEARIIQPSISPYSSPVLLVQKKDG 77

The following BLAST results are available for this feature:

BLAST of Cmc03g0069381 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040547.1	7.7e-74	92.36	pol protein [Cucumis melo var. makuwa]	[more]
KAA0031437.1	2.2e-73	91.72	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033825.1	2.2e-73	91.72	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025848.1	2.2e-73	91.72	pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo v...	[more]
TYK20443.1	2.2e-73	91.72	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc03g0069381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	6.2e-18	36.92	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	6.2e-18	36.92	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P10394	1.2e-16	32.87	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
Q9UR07	1.0e-15	31.50	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.0e-15	31.50	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc03g0069381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TG62	3.7e-74	92.36	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26...	[more]
A0A5D3CQB5	1.1e-73	91.72	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UBS1	1.1e-73	91.72	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7TEQ2	1.1e-73	91.72	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19...	[more]
A0A5A7TSL0	1.1e-73	91.72	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]

BLAST of Cmc03g0069381 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	9.0e-04	54.55	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 55..133 e-value: 2.8E-41 score: 143.1
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 25..147
None	No IPR available	PANTHER	PTHR24559:SF382	SUBFAMILY NOT NAMED	coord: 25..147
None	No IPR available	CDD	cd01647	RT_LTR	coord: 93..157 e-value: 1.09335E-33 score: 115.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 134..157 e-value: 2.8E-41 score: 143.1
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 34..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc03g0069381.1	Cmc03g0069381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:1901800	positive regulation of proteasomal protein catabolic process
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000502	proteasome complex
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0036402	proteasome-activating activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding